hoxb5b (hoxb5b,LOC107706869,LOC107727298,LOC107666910,LOC107582850,LOC107669477)


Basic Information

Item Value
gene id hoxb5b
gene name hoxb5b,LOC107706869,LOC107727298,LOC107666910,LOC107582850,LOC107669477
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11885009 ~ 11887121 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253075.1
CATGGCAAAAACGAAGTACAGTGCATTGCtataattcattattacatCATAAATTGTGCGGCGCTGGATTTTAACGACCAAGATCTACaaatcaagacattttaaaacatccaAATGAGCTCTTATTTTCTAAACTCGTTCTCAGGGCGCTATCCAAATGGGTCTGACTATCAGTTACTAAATTATGGTACTAACGGCGCTATGAACGCTTCTTACAGAGACTCCAACAGCATGCATTCCGGGTCTTTCGGTTACAACTACAATGGAATAGACCTTAGTGTAAATCGTCCCAACAATGGCCATTTCGGAGCGGTCGCAGACGATTCTCGCGCTTTCCAAAATCCGGGTCAGGAGACCCGGTACAGACAGTCGAGCTGCTCGCTCTCGTCTCCAGATCCCTTGTCTTGCGCCACCAGCGAGTCTCTGGAATTGAAGGGTTCCTCTCCTCCATCCGATCAGAGCACGCCGACCGGCAACAGCAGGCTCGCCAACAGCAACAACCTCACCAGCAGCAACAGCACACATTTTGCGGACACAGACGAGACCAACGTCTCGTCCGAGACCGAGGAAGGAGCGCAGACCGCCGCCAACACCACGCGCACGCAGAAGCAGGAATCTGTGGCGAGCTCGACTACGGCGCCTAACGACGGTCAAACCCCGCAGATATTCCCGTGGATGAGGAAGCTGCACATTAGCCATGATATGACTGGACCTGACGGGAAACGGGCTCGAACAGCTTACACTCGCTACCAGACGCTCGAGCTGGAGAAAGAGTTCCATTTCAATAGATATCTCACGCGCAGGAGGAGAATAGAGATAGCGCACGCTCTCTGCCTCTCGGAAAGGCAAATTAAAATCTGGTTCCAAAATCGCAGGATGAAATGGAAGAAGGACAATAAACTGAAAAGCATGAGTCTCGCTACGGCGGGGAGCGCGTTTCAAAATTGATCAAAACAAGTCACAATAATCGGAAAATTCGACTACTGTTCCAGCGCTGCACCTTCCAGCTCGTTGATGCCAGCAGACGACGTGCGATTTCTCCCCCCCCCCATGCAACTCACAACTGTCAGCTTTTGAATATTGTTATCACATATGCTAAACTAGTTACAATTGCCATACAATGAGTGTGAATGTCAAGTGTGTCGAGTTTATACATTCGTGGAGGAAAGCATGTTCCATGTGAGCTATTCGTGCAACGTATACTAGACTTGTTACAAGAAATATGTACAGTACGACTCGCACTACCTAACTATCCCAAGcgatagtgtaaaaaaaaaaaaaaaaaaaagaaaaacttttgtTGTATCCTTGAACTTGTATCGAAACGTCATGTATTATTCACGCAACGTGCTATATTCTTGTTACGTGCcgggctttttttaaatttgatttctcGTAGATGGTACCTGCGAGAAAAAGAATCTTTTCGCACTTACATTTGTGTACTTAGGCTGCAGCACAAGATTAATTTGGGCTCGTGAGATGGCCCACGAAGAATGTCTTTATAACAGTAGTGACCGATATGTTATTTGTAGTGCACAACGTGAGTTATGGACGTTCTGTGTTTAAAAAgttggagaaaaaaatgttttgtcattgaCATGTTGACGGCATCTCtgccatttttttgtatttgtgtctAAACCGAAAACGAGTTgatccaaaaagaaaaataaagttttctcTCAGTCATA

Function

symbol description
hoxb5b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within brain development; cardioblast differentiation; and cell fate specification. Predicted to be active in nucleus. Is expressed in several structures, including mesoderm; nervous system; otic vesicle; pharyngeal arch; and pronephric duct. Orthologous to human HOXB5 (homeobox B5).

NR:

description
PREDICTED: homeobox protein Hox-B5b

GO:

id name namespace
GO:0001708 cell fate specification biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0010002 cardioblast differentiation biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09305 HOX_5; homeobox protein HoxA/B/C5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253075.1 True 1694 mRNA 0.45 2 11885009 11887121

Neighbor

gene id symbol gene type direction distance location
hoxb8b hoxb8b,LOC107669483,LOC107706868,LOC107552737,LOC107727302,LOC107666913 coding upstream 9330 11873649 ~ 11875679 (+)
ttll6 ttll6,LOC107582749,LOC107666932,LOC107727303,LOC107669465,LOC107706894,LOC107552736 coding upstream 13235 11863622 ~ 11871774 (+)
LOC122355327 LOC107669484,LOC107666914,LOC107727294,LOC107552729,LOC107706895 coding upstream 23437 11835273 ~ 11861572 (+)
fbrs LOC107552766,LOC107706892,LOC107666918 coding upstream 49878 11823839 ~ 11835131 (+)
msl1b msl1b,LOC107706890,LOC107552764,LOC107669485,LOC107582751,LOC107666930,LOC107727293 coding upstream 64583 11814665 ~ 11820426 (+)
skap1 skap1,LOC107666922,LOC107727295,LOC107669469 coding downstream 17961 11905082 ~ 11932134 (+)
tmem106a LOC107706900,LOC107552767,LOC107669487,LOC107666933,LOC107727317 coding downstream 58950 11946071 ~ 11949632 (+)
arl4d arl4d,LOC107552768,LOC107706901,LOC107582746,LOC107727318 coding downstream 64730 11951851 ~ 11953983 (+)
dusp3a dusp3a,dusp3,LOC107669488,LOC107552769,LOC107666929,LOC107582744 coding downstream 84574 11971695 ~ 11981994 (+)
sost LOC107552770,LOC107706903,LOC107582741,LOC107743777 coding downstream 102160 11989281 ~ 11993628 (+)
G87337 chmp2a,LOC106589279 non-coding upstream 61687 11822063 ~ 11823322 (+)
G87343 NA non-coding upstream 81382 11803287 ~ 11803627 (+)
G87341 NA non-coding upstream 84382 11800356 ~ 11800627 (+)
G87331 NA non-coding upstream 140604 11741981 ~ 11744405 (+)
G87285 NA non-coding upstream 388017 11484193 ~ 11496992 (+)
G87617 NA non-coding downstream 110169 11997290 ~ 11997512 (+)
G87621 NA non-coding downstream 180282 12067403 ~ 12067629 (+)
G87644 NA non-coding downstream 262302 12149423 ~ 12149637 (+)
LOC122355133 NA non-coding downstream 264031 12151152 ~ 12156922 (+)
G87664 NA non-coding downstream 270465 12157586 ~ 12157815 (+)
hoxb6b hoxb6b,LOC107669478,LOC107706870,LOC107582852,LOC107552740,LOC107666911,LOC107727299 other upstream 912 11882151 ~ 11884097 (+)
G87315 zeb1b,LOC107666916,LOC107706887,LOC107727309,LOC107582755,LOC107552760,LOC107669492 other upstream 183354 11694844 ~ 11701655 (+)
svila LOC107686370,LOC107657481,LOC107584371,LOC107749370,LOC107549408 other upstream 1302464 10523143 ~ 10582545 (+)
LOC122355633 rhoq other upstream 1385311 10497425 ~ 10499698 (+)
LOC122355192 opn4b,LOC107552747,LOC107739286,LOC107568552,LOC107582762,LOC107700131 other upstream 1388732 10481492 ~ 10496277 (+)
nbr1a nbr1,LOC107669491,LOC107706899,LOC107582742,LOC107727312,LOC107666919 other downstream 49720 11936841 ~ 11945635 (+)
G87817 NA other downstream 845643 12732764 ~ 12737649 (+)
gall si:rp71-1c10.8,LOC107677873,LOC107743798,LOC107675007,LOC107566084,LOC107754084,LOC107563807 other downstream 873253 12760374 ~ 12762731 (+)
G88016 NA other downstream 1554822 13441943 ~ 13444915 (+)
G88082 NA other downstream 1708673 13595794 ~ 13596348 (+)

Expression


Co-expression Network