si:ch211-194k22.8 (si:ch211-194k22.8,LOC107565757,LOC107754091,LOC107743792,LOC107675005)


Basic Information

Item Value
gene id si:ch211-194k22.8
gene name si:ch211-194k22.8,LOC107565757,LOC107754091,LOC107743792,LOC107675005
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 12685112 ~ 12689248 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253089.1
TTTCCTGTTGTTGTGAGGATCTGCCGTTAGATTGAATCTAGACGGGACTCAAGCTCGTGCCACGTTACGCTACGGTGCGTTAGCCTCAAATGTGTTCCCTGTCATTTCTCGGTAAAGTGCTGTCCTTCCATGGATTCACTCAAGTATTTGAGCTGAAGTAGAATAATCGCAAAGGAACATAGTTGTCGGTATCTGTAGTAGATCTGCAGTGTCTAAATCTCAGAAAGAGAGGAATAGTGTTATTTTGGTCCAATACAGCGTAACTGCATTATGCAGAGTGGAGCCCTTTTTCTCGCTcgcaaataaaataatgggaGAGAAAtgagaaggaaaacaaaagcGCAGCGAATTCTTGACTACGAAAatgaagaggatgaggaagaggaacaAAAACCGGACTGCTTCAGTAACGGTGCACAGAAACgaagaaaaatgtattcatccAAAGAGAAAGCAGAAGAAAATAGCTCATCCGACGCCGGTCTTCAGAAGTTAGATATCAAGGTTAATGAGCTGGATTGTTCTTCCGCAGACCTCTACACTGATAGTCCTCCTGCTTCTGAGACTGAGGAGGCTCATTATTTACAGTCCTATTCGAAGAAGGAGCTTATTGCCATGGTCTTATGCATGCAGAGGGAAATGGAGGACTTGAAGGAACAACTTAGGTGCCTTACAGCATGTGGAAAGCTAGCAAGAAACCTGGAAATGCTGATCGAGAAGACCCAGATGTGGTCAAATGGGAACAACGGGACCTCTCTCGGGAACCCAGATTCTCAAGGCACGGCACAGGCACCTGCCGAGGCAGATGCTGTGATACCAGATGTACGTTCTCCTCCAGCCATTGTGAATGGGCAATGGCTGAATCAGGGTCCAGGACCACAGAAACCTCACGAGGCCACTCAGAATGCTCAGAGGGACGGGCTCTTCACAGAGtTTATCACTCCTGAACTTTTGGAGAGGTGTAACACAGGCACCACTGCCCAAAAACTGACCAATGACCTGCTCCGTGGCCTCTACGAGAGGGAATGCCTGGCCTCCCACTCTATATCTGGAGTCGTGTACAACAAGAGAGGCCAACCAAAGCCTGCTCTTCCCACTGAAGAGGTCCAGGCAATCCTGAGAActgttcagtatttttttcctggCAAGACTGATGCAGAGATCAAGGGCTACATCCGACAGAAGCTGCAAAACGAAGCCAAGAGGCTGAGGAAGAAACCAACAGTCTCAGGCCAATATGAGTCTAGAGGTTTCAATGTACCGTTAGATATGATCGACCAGAATTGAAACGTACGGTTAGTGGATATTAATTGCGTGTTCTCCATTAAAATAGCCTTATTCGGTGTTACTTACAATTAAAGTCCTGGACTCAAGTGAAATTGATGTGCATTGATAATAGTCTTCAAAGAAAGTCACAATGACGTGTTGCAGCTGCCATTCGGCGGTTGAcggttgtaatttttttttttctgatgtgaaaatgcaaatgagcaatTCCAGATAAGTCCAAATGTTGCATTCACGAAAGCCTCTGGCTGCATCGAGCACAGTCGACGCTTAGATATCAAGATGTTTAGATATTAATGATGTGTCTCTGTGAacgtctgtttttttttaatactttgtatTTAACAGATGTAGGATTTCAGGACATACCATTGTGCGCAGAGCGTAATAGGGCGTGACCattatttacattgtattttCAATGTATTTCTTATTTGATGATGTTATTTGGTCTACATGACAACAGCTTTATGTATGtagttttttgttattaaatgctgaAACGCA

Function

symbol description
si:ch211-194k22.8 Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of Notch signaling pathway and positive regulation of neuron differentiation. Predicted to be active in nucleus. Orthologous to human BEND6 (BEN domain containing 6).

NR:

description
uncharacterized protein LOC110491503 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253089.1 True 1794 mRNA 0.44 7 12685112 12689248

Neighbor

gene id symbol gene type direction distance location
mrpl10 mrpl10,LOC107566794,LOC107754119 coding downstream 17133 12666115 ~ 12667979 (-)
osbpl7 osbpl7,LOC107565688,LOC107677882,LOC107743767,LOC107754093 coding downstream 20075 12654000 ~ 12665037 (-)
pdk2a LOC107754097,LOC107565668,LOC107568951,LOC107677886,LOC107743772,LOC103046317,LOC108426453 coding downstream 121073 12556682 ~ 12564039 (-)
LOC122355678 LOC107675002,LOC107754109,LOC107566636 coding downstream 132397 12549656 ~ 12552715 (-)
myo1d myo1d,si:ch211-94l19.4,LOC107743773,LOC107677861,LOC107675020 coding downstream 136183 12488769 ~ 12548929 (-)
cbx1b cbx1b,cbx1,LOC107677876,LOC107743766,LOC107566057,LOC107563783 coding upstream 12000 12701248 ~ 12708174 (-)
ccdc189 LOC107566122,LOC107754089,LOC107675027,LOC107743779,LOC107563782,LOC107677867 coding upstream 25003 12714251 ~ 12717184 (-)
znf646 znf646,LOC107754085,LOC107675018,LOC107743758,LOC107677879,LOC107563786,LOC107565918 coding upstream 48571 12737819 ~ 12746643 (-)
cd37 NA coding upstream 63471 12752719 ~ 12758921 (-)
si:ch211-214e3.5 LOC107754079,LOC107565766,LOC107675030,LOC107722448,LOC107689947,LOC107563792 coding upstream 157266 12846514 ~ 12855295 (-)
LOC122355629 NA non-coding downstream 46376 12613150 ~ 12638736 (-)
G87746 NA non-coding downstream 197717 12438750 ~ 12487395 (-)
G87695 LOC107669482,LOC107552775 non-coding downstream 338046 12344898 ~ 12347066 (-)
G87660 NA non-coding downstream 532375 12152240 ~ 12152737 (-)
G87659 NA non-coding downstream 533477 12151299 ~ 12151635 (-)
G87860 gabrz,LOC108273489,LOC107675029,LOC107754081,LOC107565977 non-coding upstream 115448 12804696 ~ 12807646 (-)
G88003 NA non-coding upstream 676705 13365953 ~ 13368320 (-)
G88019 NA non-coding upstream 744646 13433894 ~ 13434125 (-)
G88034 nrap,LOC107755535,LOC107702452 non-coding upstream 769208 13458456 ~ 13459865 (-)
G88035 nrap,LOC107702452,LOC107755535 non-coding upstream 770897 13460145 ~ 13461245 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other downstream 9640 12649383 ~ 12675472 (-)
G87608 NA other downstream 733957 11948540 ~ 11951155 (-)
G87569 NA other downstream 849500 11832879 ~ 11835612 (-)
G87489 NA other downstream 1362509 11321423 ~ 11322603 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other downstream 1639223 11042888 ~ 11045889 (-)
G87845 LOC107675011 other upstream 62656 12751904 ~ 12752678 (-)
LOC122355808 LOC107684141,LOC107702421,LOC107581556,LOC107684142,LOC107708119,LOC107708127 other upstream 735060 13424308 ~ 13432195 (-)
entpd1 LOC107707825,LOC107755533,LOC107581561,LOC107702455,LOC107684037,LOC107566185 other upstream 834420 13523668 ~ 13540301 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107702422,LOC107750316,LOC107566231,LOC106949585,LOC106589326 other upstream 920172 13609420 ~ 13691340 (-)
srsf2a srsf2,LOC107702465,LOC107566380,LOC107684046 other upstream 1283634 13972882 ~ 13976511 (-)

Expression


Co-expression Network