egr2b (egr2b,LOC107739063,LOC107653961,LOC107745678,LOC107596614,LOC107593522,LOC107596611)


Basic Information

Item Value
gene id egr2b
gene name egr2b,LOC107739063,LOC107653961,LOC107745678,LOC107596614,LOC107593522,LOC107596611
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 2141370 ~ 2143777 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253099.1
GCTCCACAAGGATCTGTCATTCAACAACACAGAGCCGTCAGATGGCATCATAGTGAACGCTAAACTCACTGACAGCTTTCCACATGAAACGTTTCGAGCGAGCGTTAGCACTGgcacaaaacattttgtgaacaTCTGAACGAGTGCTCCTTCGGACTTCGCGATGACAGCTAAAACTTTGGAGAAAGCCCCTGTAACTCTCGGTGGCTTCGTGCACCCTCTTTCCGAAAGCATCTACTCGGTGGACGAGATCGCCACATCGCTGCCAGCCTCTGTGACTATATTTCCAAACGGTGATTTAGGAGGGCATTACGAGCAGATAAACCCGGGAGATGGCTTGATTGGCGGGGATATGAGCACGGAGAAGCGCTCTCTCGACTTGACCTATTCCAGCAGCTTCGCGCAACCGGCTGGCCCTCGCAACCAAACTTTCACCTACATGGGAAAGTTTTCCATCGACTCCCAGTACCCAGGAAACTGGAACCCAGAGGGCGTGATCAACATCGTGAGCGCGGGGATCCTGGGCATGACCCAGCCATCCTCAGCATCCTCGTCACCTGCCTCCTCAGTCTCCCCCAGCCACTTCTCCAGCACTCTCAGCTGCACCATGGCGCAGAACCAGGCGGACATGGAGCACATCTACTCGCCCCCACCGCCCTACTCTGGATGCGGGGAGGTGTATCAAGACCCGTCCGCGTTCCTCTCCACCTCCACCTGTCCGATCTCCTACCCTCCGCCATCCTACTCCTCCCCAAAGCCAAGCGCGGACTCCGGGCTGTTCCCCATCATCCCGGACTACGCCGGCTTTTTCCAGCCGCCGTGCCAGAGGGACATGCAGTCGATGCCCGACCGCAAACCGTTCTCGTGCCCGCTGGACTCGTTCAGGGTCCCGCCTCCGTTGACCCCCCTGAACACTATCAGGAACTTCACGCTGGGGGGACCGGTGTCTGACGGGCCCCGGCTACCCACAGCCTACAGCCCGCAGAACTTACCCCTCAGGCCCATCCTGCGCCCGAGGAAATACCCCAACAGACCCAGCAAGACCCCCGTGCACGAGCGGCCCTACCCGTGCCCCGCGGAGGGCTGCGACAGGCGCTTCTCCCGGTCCGACGAGCTCACCAGACACATCCGCATCCACACCGGCCACAAACCCTTCCAGTGTCGGATATGCATGAGGAACTTTAGCCGCAGCGACCACCTGACGACCCACATCCGCACGCACACCGGCGAGAAGCCCTTCGCCTGCGACTTCTGCGGGAGAAAGTTCGCGCGGAGCGACGAAAGAAAGAGACACACCAAAATCCACCTGCGACAGAAGGAGAGGAAGTCATCCTCGTCGTCCTCCGGGGTGTCCAGCTCGGAGCGCGGCGTCGCCACGGGCATCTGCTCGTCCAGTTCAAGCCAGTAAAACTTTCAGCTGGACCGTGCAATATCCAACACTATGTAGGCAATACGACGACAATAATAACGCACCATTCGCGATATATTAAAACCGGGTGGACCGATGAAAGTGAAATCAAACCACGGTGCCAAATGGTACCATGGACGCATTCGTGGCGCGCACTTTTGAAGCCGGAGCGATTTGttcgttttcttttttgccTCAGTCGCATGCTGACTGACCAAACGCACTTTGTTTGAATATGTTAGGCcgattaatttaataattaaaaaaaaaaaaataaccatagCACGTGGGAGACTTGTGTCCAAGGCAAAGGCGGAACGCTGATCGGTGGCGTTTAACAAAGTTAACTTAAACAGACTAAACTTTTCAAACGTGTCACTATTTTCTCCCATCGTCGTGCCTTTCGTCCGTTCATCTTGTACATACACCCGGAGGCTTGAATTAAATTGTACATTATCCTTTAATATGAAATTTTTGGAagatatatttttgtacaaacCGTTTCGTGTCGAAAGTGTTGCATTTGTGCTTAAAACATGGATTGTGTATAGGCCTGCATAGCTGAAACTCATAGCGACTTGACGTTTGTTCTGTGGTTTGTTctgatataaatgtatttgttatgaAGTGACTAACGCGGGTCAATAATGTCCTACTTTGTcaacatgaaaacaataaacGGCACATGAATTGTGAACTCA

Function

symbol description
egr2b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within embryonic organ development and nervous system development. Predicted to be located in nucleus. Is expressed in several structures, including nervous system; neural crest; neural keel; neural plate; and neural rod. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 1D; Charcot-Marie-Tooth disease type 3; Charcot-Marie-Tooth disease type 4E; and motor peripheral neuropathy. Orthologous to human EGR2 (early growth response 2).

NR:

description
PREDICTED: E3 SUMO-protein ligase EGR2

GO:

id name namespace
GO:0048168 regulation of neuronal synaptic plasticity biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0071320 cellular response to cAMP biological_process
GO:0021575 hindbrain morphogenesis biological_process
GO:0071371 cellular response to gonadotropin stimulus biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0021654 rhombomere boundary formation biological_process
GO:0035914 skeletal muscle cell differentiation biological_process
GO:0048932 myelination of posterior lateral line nerve axons biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K12496 EGR2; early growth response protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253099.1 True 2109 mRNA 0.53 2 2141370 2143777

Neighbor

gene id symbol gene type direction distance location
tmem26b tmem26,tmem26b,LOC107695511,LOC107745662 coding downstream 163655 1974770 ~ 1977715 (-)
ccdc6b ccdc6b,ccdc6,LOC107695538,LOC107654058,LOC107746455,LOC107727062 coding downstream 328198 1798058 ~ 1813172 (-)
slc16a9b slc16a9b,slc16a9,LOC107654057,LOC107596608,LOC107727058,LOC107695515,LOC107746460 coding downstream 344376 1790009 ~ 1796994 (-)
fam13c fam13c,LOC107654055,LOC107727053,LOC107596592,LOC107695537,LOC107746461 coding downstream 367005 1761798 ~ 1774365 (-)
zgc:171971 zgc:171971,LOC107695535,LOC107596590 coding downstream 482623 1652449 ~ 1658747 (-)
LOC122355364 cyp26a1,LOC107653962,LOC107593523,LOC107745679,LOC107596578,LOC107695519,LOC107739064 coding upstream 187516 2331293 ~ 2335604 (-)
exoc6 exoc6,LOC107654070,LOC107695547 coding upstream 194899 2338676 ~ 2380409 (-)
adam8b LOC107654071,LOC107745666,LOC107739052,LOC107695548,LOC107596597,LOC107593516 coding upstream 238157 2381934 ~ 2392900 (-)
LOC122355817 LOC107695513,LOC107739060,LOC107653963,LOC107745680,LOC107593524,LOC101884976,LOC107579057 coding upstream 254754 2398531 ~ 2402685 (-)
crym crym,LOC107745653,LOC107569187,LOC107753321,LOC107684776 coding upstream 326246 2470023 ~ 2473570 (-)
G84956 NA non-coding downstream 139734 2001334 ~ 2001636 (-)
G84928 rhobtb1,LOC107654062,LOC107727061,LOC107745661,LOC107695540 non-coding downstream 172320 1964986 ~ 1969050 (-)
G84919 NA non-coding downstream 386799 1751402 ~ 1754571 (-)
LOC122355537 NA non-coding downstream 404101 1710498 ~ 1737269 (-)
G84909 NA non-coding downstream 411948 1727106 ~ 1729422 (-)
G85116 NA non-coding upstream 163115 2306892 ~ 2309033 (-)
G85119 NA non-coding upstream 167466 2311243 ~ 2311471 (-)
G85173 NA non-coding upstream 338470 2482247 ~ 2483927 (-)
G85174 NA non-coding upstream 341417 2485194 ~ 2486204 (-)
G85177 NA non-coding upstream 362401 2506178 ~ 2507961 (-)
ank3b ank3b,LOC107654059,LOC107695539 other downstream 193958 1814083 ~ 1947412 (-)
dlx4b dlx4b,LOC107739765,LOC107557342,LOC107708902 other downstream 1243853 889710 ~ 897517 (-)
ifnphi4 LOC107653919,LOC107732171,LOC107598640,LOC107664622,LOC107708945,LOC107557348 other downstream 1588927 543246 ~ 552443 (-)
zgc:163073 LOC107653918,LOC107732170,LOC107708955,LOC107557349,LOC107664608,LOC107598675 other downstream 1641151 496964 ~ 500219 (-)
LOC122355759 NA other downstream 1650991 484438 ~ 490379 (-)
jmjd1cb jmjd1c,LOC107745648,LOC107654065,LOC107695544 other upstream 30211 2173988 ~ 2285052 (-)
G85232 LOC107663296,LOC107583514,LOC107733536 other upstream 624131 2767908 ~ 2781353 (-)
LOC122355711 rara,LOC107700643,LOC107717720,LOC107565243,LOC107563215,LOC107719850,LOC108434941,LOC108261354,LOC107554136,LOC107737746,LOC108276117 other upstream 945852 3089629 ~ 3103315 (-)
G85366 NA other upstream 1114754 3258531 ~ 3299688 (-)
kcnh6b LOC107684759,LOC107753307,LOC107573422 other upstream 2073627 4217404 ~ 4230039 (-)

Expression


Co-expression Network