itga3b (itga3,itga3b,LOC107708875,LOC107664597,LOC107557321)


Basic Information

Item Value
gene id itga3b
gene name itga3,itga3b,LOC107708875,LOC107664597,LOC107557321
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 837814 ~ 867877 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253100.1
TATTTGGGGAAGCAGGGCTGGTGAAGTGTGGCGGACAGCGGCAGGTTGGAATTCGCTGCGGGTGCGTGGAGGCGGGGAACCGAGAACAGTAAAGAAACACCTTACAGCTCGGTGCCAGACAGCGAAAGAAGACGCTTTCATATGGCGTGTGATTGATCAATTCAATCTCATTGGCTTTGGTTGTGCaagcgggagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagcgagagagggaaTATCAAATATGGCTGGAAAGTCTCTGCACTTGTGCGTATTCGTGATTTGCGCGATTCAAACGAACACCGGATTTAACATTGACGTGCAGTTCCCGGTCATCAAAGAAGGAAAAACCAAGGGCAGCCTGTTTGGATTTTCCGTTGCATTGCACAAACAGACCGAAAAGACAAAGAAGAACTTGCTCTTAGTTGGAGCGCCTCAAGAAAAAGCCCAGCCCCAACTCAGCAAATTCATTAATGAAACCGGAGCTGTGTATTACTGTCCCATCACCATCGACCAGCATGACTGCGGGAGGATGGACCTCATCAGTAAACCGCAGTCAACAGAGATGGTGGAGGGCATGTGGCTGGGAGTGACCGTGGCCAGTCAGAGGAATGGAGGACGTGTGCTGGCATGCGGCCATCGCTACGTAAAGAAGCTGCTGGGCGCCGAGGAGCAGCAGCGCATGGTGGGCAAATGTTACGTGCGGGGAAACGACCTGACCTACGACCCCTCCGATTACTGGCAGTCGGACACTTACGAGCTCTGCGACTTCAACTACGACCAGAACCTGGAGGGCATGTGCAACATGGGCATCTCGGGGGGCATGACGGAGAACGACGTGTACTTTGGGACGCCCGGCAGCTTTGTGTGGCAGGGAACCGTCCACATGAAAGAGAGAGATCCCGACTCCGATTTTGCCGGAGATGCCAATGAGTTGACCTTCAGAAAGCTAGGCGAGGACAGACTCAACATCTATATAGGTTACTCCGTGCTGGAGGACATAAAGTTGCTGGATCGCTCCAAGTACACCGTGGTGACGGGGGCTCCCAGAGACGATTTCAAAGGTTCGGTGATCATCGCAGAGAAACAGGATTTGCTTCTTGATCCGGTGATGACGATCCCGGGGGAACAAATAGGGTCGTATTTTGGCAGCTGCTTGGCGGTGACGGACCTTAACAACGACGACTGGAACGACCTGATTGTTGGAGCGCCGTTCTACTTCGACCGTTACAAGGAGGAGGGAGGAGCGGTTTACGTCTTCATGAACGAGAACGGGTCCTTCCAGGAAAAAGCTAGCTTGGTTCTGAAGGGGAAAAAGGGCTCAGGGTTTGGATTTGCTATTGCTGCGGTGGGGGACGTCAATCAGGATGGATTTCAAGATTTTGCTGTTGGTGCTCCTTTCCACGACTCTGGGAAGGTCTATATATGGATGGGGAgtaaaaatggaataaaaaaagaacccAGCCAGGTGATCGAGGGGAAATCATTAGGTCCCAGTGGCTTTCAGACGTTCGGCTACTCTCTCAGCGGAGGAATGGATATGGATGGAAATGATTATCCTGACATTTTGGTGGGATCCATGGATGACCGCATCGCTCTCTTGAGGGCTCGTCCAGTCATCCACCTCTCCAAAAACTTCACAGTAGAGCCAAAGATCGTGATTCCTAGCCAGTGTGTTAATTCCTGCATAAAGGTGAAGGTGTGTTTCAGTTACACTCTCAGCAATGGAAACAAAGCCTTCAGGAAGACCATCACTGTGAAGTACACAGTAGATGCCGACCAGAACCGCCGTGGCGCTCGAGTACGCTTTCTTGACAACAAGCAAAGCACATTTACAGGCCTGCTTTCTTTCTCCGCTCCCGCGTGTCAAGAGCTGGAACTGACTGTTATTACTCCCGTGAGAGACAAACTTCAGCCCATAGCGTTCACCCTGAACGTGTCTCTAAACGAGCAGAAAGCAGCAGCGCAGCAAGCGCTCCAGAGTCTGGACGACTTCCCCGTGCTGAGCGGCCAGCAGGTCCTGACCGACAAAAACGAGATTAACTTTCATAAGGAGTGTGGAGATGACAACAGATGCAGCAGTAACCTGCAGCTCAAGGCCACGTTTGCTGATGAGAATTACATTCCCTTTCCCACTCAGACTATGGAGTTCAACAGCAACATTAAGAAGCTGGTGATGATGGTGGAAGTTACTAACACGCCGGACGGAGGCGGGCAGGCCGAGGACGCCCATCAGGCCATGCTGAACATCACCATCCCTCCCTCACTCAAATACTCAGGAGTGCGCCCTCAGCCTGGTTTCGATATCGAGTGCAGCGCAAACGAGACCGTGATATGCGATCTGGGAAACCCGTTTAAAAGCAACCAGAAGACCTCATTCATAATCATCTTTGAGACTTCTGGTATAACGCTTTACACCGAGCAGATCGAGTCTCAGCTTCAGCTCTCCACTATCAGCGAGCAGAAGGATCTGTATCCCGTTCCTGTCACCCTCAACGTGAAGAACACGGTCCTCACTACATTTTCTTTAGAAAAACAAGTGATTGACACGTCGTTCAGCGGCAGTGTGATCGGGGAATCGGCTATGAACAGCACCAGTGATGTGGGCAGTCTGCTGGAGTTTGTGTTTCGTGTGCACGTGCTGGGAGAACCTCTGGGAAACTTGGGAACTCTGATGATTGACTTCGAATGGCCGTTTGAGGTGACCAATGGGAAGTGGCTGCTGTACCTCACAGAGATAGTGATCAAAGGAGCGTCAGAGTCGCGTTGTGTCCCACCGGGGAAGGTTGTCAACCCTCTCAACCTCACACTCTCAGACGGAGTTACCAAACGGTCTAAAAGAGACGTAGGCTCCGGGTATCCCCACGCGGAAGCTTCCGTCACCGTCCTGGCACCTCGTAAAGTGTCCCATTTGCTGGAGTGTTCGAAGCCGACGGCTCGCTGCATGACCTTCTCCTGCCCGCTGCTCAACATGTCGACTCAGGCAGAGATCAGAGTCAGGTCTCGTGTGTGGAACAGCACCTTGCTGGAGGATTACGCCAATGCCCTGCGAGTGGAAGTGAAGGGCCAGGCCACGCTGAGACTGCTGACGGATAAACCGGCCATCAAAATGGACAACCAGATCAGAGAGTTTTCAGTAAACATCGATCCGGTGCTGGGAGAGGAGACGCCGTATGAAGTTCCTCTCTGGATCATCATTGTTGCCGCGGTTGCTGGGATACTGTTGTTAGGCATCATCAGTCTCATTCTATGGAagTGCGGTTTCTTCAAAAGGACCGTTTACTACAGGATAATGCCAAAGTACCATGGAGTGAAAGTACGCAAAGAGGAACGCTGTAACTTGGCCTTTCAGCCCGAGCAAGAACTGAGCAAGAAACTCTGGGTCACCAACTGGACAGAAATGCAGGAATATTACTACTGACCTCTTCACCTCTCCAGTGGAGAGTGACGATTGTCTTTTATTAACCCCGTCTCGACTCAACAGACACTGGACGCTCGCGCGGCGACAAcgtttttgagaaatgtttattgGTCTGTGTGCAATATCATGGACTTGTAGACCATTAAACCGCTTTCAACAAAGCCAGAGTATTGTCTGGGACACCTTTCGCTGGCTTATTTTCATAGTTTTAAATCTTCGCGAACATGTAAATATGcttcattgcattttaaatttgattccattgtaatacttttttttgttatgtcgCTATAATAGTTCCCTTAACCAGAGCCTTGAGTCATTTTACTCATTGAGATAAGGAGATTTTTTCCAACACGCTATAACTGATCTGAAACCAGTGCTGTTCAAATAGCACTGAGGAAATAGACTTGATTTTCAATTCCAGATGCTTCGCCTTTGGATGCTTTTTGTGTAACACTGTGTAAAAACTGCTCAGTTTTTTTCAGCTACTTTCTCCCATGGAGAAAGACTACAGCGTGTAAGTGTGTAAAATGTTTTCCCAAACCATCATGTTCCTGTCAGGATTAGTTGGTTGAATCTCTTGAAGTTAGGTCAAtcaaaaaagtgtgtgtatatatgtatata
>XM_043253101.1
ATTTGGGGAAGCAGGGCTGGTGAAGTGTGGCGGACAGCGGCAGGTTGGAATTCGCTGCGGGTGCGTGGAGGCGGGGAACCGAGAACAGTAAAGAAACACCTTACAGCTCGGTGCCAGACAGCGAAAGAAGACGCTTTCATATGGCGTGTGATTGATCAATTCAATCTCATTGGCTTTGGTTGTGCaagcgggagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagcgagagagggaaTATCAAATATGGCTGGAAAGTCTCTGCACTTGTGCGTATTCGTGATTTGCGCGATTCAAACGAACACCGGATTTAACATTGACGTGCAGTTCCCGGTCATCAAAGAAGGAAAAACCAAGGGCAGCCTGTTTGGATTTTCCGTTGCATTGCACAAACAGACCGAAAAGACAAAGAAGAACTTGCTCTTAGTTGGAGCGCCTCAAGAAAAAGCCCAGCCCCAACTCAGCAAATTCATTAATGAAACCGGAGCTGTGTATTACTGTCCCATCACCATCGACCAGCATGACTGCGGGAGGATGGACCTCATCAGTAAACCGCAGTCAACAGAGATGGTGGAGGGCATGTGGCTGGGAGTGACCGTGGCCAGTCAGAGGAATGGAGGACGTGTGCTGGCATGCGGCCATCGCTACGTAAAGAAGCTGCTGGGCGCCGAGGAGCAGCAGCGCATGGTGGGCAAATGTTACGTGCGGGGAAACGACCTGACCTACGACCCCTCCGATTACTGGCAGTCGGACACTTACGAGCTCTGCGACTTCAACTACGACCAGAACCTGGAGGGCATGTGCAACATGGGCATCTCGGGGGGCATGACGGAGAACGACGTGTACTTTGGGACGCCCGGCAGCTTTGTGTGGCAGGGAACCGTCCACATGAAAGAGAGAGATCCCGACTCCGATTTTGCCGGAGATGCCAATGAGTTGACCTTCAGAAAGCTAGGCGAGGACAGACTCAACATCTATATAGGTTACTCCGTGCTGGAGGACATAAAGTTGCTGGATCGCTCCAAGTACACCGTGGTGACGGGGGCTCCCAGAGACGATTTCAAAGGTTCGGTGATCATCGCAGAGAAACAGGATTTGCTTCTTGATCCGGTGATGACGATCCCGGGGGAACAAATAGGGTCGTATTTTGGCAGCTGCTTGGCGGTGACGGACCTTAACAACGACGACTGGAACGACCTGATTGTTGGAGCGCCGTTCTACTTCGACCGTTACAAGGAGGAGGGAGGAGCGGTTTACGTCTTCATGAACGAGAACGGGTCCTTCCAGGAAAAAGCTAGCTTGGTTCTGAAGGGGAAAAAGGGCTCAGGGTTTGGATTTGCTATTGCTGCGGTGGGGGACGTCAATCAGGATGGATTTCAAGATTTTGCTGTTGGTGCTCCTTTCCACGACTCTGGGAAGGTCTATATATGGATGGGGAgtaaaaatggaataaaaaaagaacccAGCCAGGTGATCGAGGGGAAATCATTAGGTCCCAGTGGCTTTCAGACGTTCGGCTACTCTCTCAGCGGAGGAATGGATATGGATGGAAATGATTATCCTGACATTTTGGTGGGATCCATGGATGACCGCATCGCTCTCTTGAGGGCTCGTCCAGTCATCCACCTCTCCAAAAACTTCACAGTAGAGCCAAAGATCGTGATTCCTAGCCAGTGTGTTAATTCCTGCATAAAGGTGAAGGTGTGTTTCAGTTACACTCTCAGCAATGGAAACAAAGCCTTCAGGAAGACCATCACTGTGAAGTACACAGTAGATGCCGACCAGAACCGCCGTGGCGCTCGAGTACGCTTTCTTGACAACAAGCAAAGCACATTTACAGGCCTGCTTTCTTTCTCCGCTCCCGCGTGTCAAGAGCTGGAACTGACTGTTATTACTCCCGTGAGAGACAAACTTCAGCCCATAGCGTTCACCCTGAACGTGTCTCTAAACGAGCAGAAAGCAGCAGCGCAGCAAGCGCTCCAGAGTCTGGACGACTTCCCCGTGCTGAGCGGCCAGCAGGTCCTGACCGACAAAAACGAGATTAACTTTCATAAGGAGTGTGGAGATGACAACAGATGCAGCAGTAACCTGCAGCTCAAGGCCACGTTTGCTGATGAGAATTACATTCCCTTTCCCACTCAGACTATGGAGTTCAACAGCAACATTAAGAAGCTGGTGATGATGGTGGAAGTTACTAACACGCCGGACGGAGGCGGGCAGGCCGAGGACGCCCATCAGGCCATGCTGAACATCACCATCCCTCCCTCACTCAAATACTCAGGAGTGCGCCCTCAGCCTGGTTTCGATATCGAGTGCAGCGCAAACGAGACCGTGATATGCGATCTGGGAAACCCGTTTAAAAGCAACCAGAAGACCTCATTCATAATCATCTTTGAGACTTCTGGTATAACGCTTTACACCGAGCAGATCGAGTCTCAGCTTCAGCTCTCCACTATCAGCGAGCAGAAGGATCTGTATCCCGTTCCTGTCACCCTCAACGTGAAGAACACGGTCCTCACTACATTTTCTTTAGAAAAACAAGTGATTGACACGTCGTTCAGCGGCAGTGTGATCGGGGAATCGGCTATGAACAGCACCAGTGATGTGGGCAGTCTGCTGGAGTTTGTGTTTCGTGTGCACGTGCTGGGAGAACCTCTGGGAAACTTGGGAACTCTGATGATTGACTTCGAATGGCCGTTTGAGGTGACCAATGGGAAGTGGCTGCTGTACCTCACAGAGATAGTGATCAAAGGAGCGTCAGAGTCGCGTTGTGTCCCACCGGGGAAGGTTGTCAACCCTCTCAACCTCACACTCTCAGACGGAGTTACCAAACGGTCTAAAAGAGACGTAGGCTCCGGGTATCCCCACGCGGAAGCTTCCGTCACCGTCCTGGCACCTCGTAAAGTGTCCCATTTGCTGGAGTGTTCGAAGCCGACGGCTCGCTGCATGACCTTCTCCTGCCCGCTGCTCAACATGTCGACTCAGGCAGAGATCAGAGTCAGGTCTCGTGTGTGGAACAGCACCTTGCTGGAGGATTACGCCAATGCCCTGCGAGTGGAAGTGAAGGGCCAGGCCACGCTGAGACTGCTGACGGATAAACCGGCCATCAAAATGGACAACCAGATCAGAGAGTTTTCAGTAAACATCGATCCGGTGCTGGGAGAGGAGACGCCGTATGAAGTTCCTCTCTGGATCATCATTGTTGCCGCGGTTGCTGGGATACTGTTGTTAGGCATCATCAGTCTCATTCTATGGAagTGCGGTTTCTTCCGACGGGCCAGCAGGAGGGAGATGTATGAGGCCAAATCCCAGAAAGCAGAAATAAAGATCCAGCCCTCTGAGACAGAGAGGCTGACGGAGGAATACTGAGCCTGCGGGGGCCCTCGGGCCGCTATGGCAGCACTGTTAGGGCCCTTCGTGCGGTTTCTTCAAAAGGACCGTTTACTACAGGATAATGCCAAAGTACCATGGAGTGAAAGTACGCAAAGAGGAACGCTGTAACTTGGCCTTTCAGCCCGAGCAAGAACTGAGCAAGAAACTCTGGGTCACCAACT

Function

symbol description
itga3b Acts upstream of or within fin morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Is expressed in several structures, including cardiovascular system; nervous system; periderm; pharyngeal arch; and pronephros. Orthologous to human ITGA3 (integrin subunit alpha 3).
itga3 Enables protease binding activity and protein heterodimerization activity. Involved in several processes, including animal organ development; positive regulation of protein localization to plasma membrane; and regulation of transmembrane receptor protein serine/threonine kinase signaling pathway. Located in cell surface and filopodium membrane. Part of integrin alpha3-beta1 complex.

NR:

description
integrin alpha-3

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0033334 fin morphogenesis biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component

KEGG:

id description
K06482 ITGA3, CD49c; integrin alpha 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253100.1 True 4077 mRNA 0.50 25 837814 867877
XM_043253101.1 False 3580 mRNA 0.52 26 838470 867876

Neighbor

gene id symbol gene type direction distance location
abi3b abi3b,LOC107654042,LOC107598650,LOC107743966,LOC107664617,LOC107708878 coding downstream 35012 798821 ~ 802802 (-)
LOC122355750 LOC107654041 coding downstream 40090 778501 ~ 797724 (-)
tbc1d12b LOC107743959,LOC107654040,LOC107708937,LOC107664632 coding downstream 75210 746267 ~ 762604 (-)
noc3l noc3l,LOC107664623,LOC107654039,LOC107743960 coding downstream 92711 736648 ~ 745103 (-)
fra10ac1 fra10ac1,LOC107664625,LOC107654038,LOC107708941,LOC107557362,LOC107743956 coding downstream 187626 640871 ~ 650188 (-)
kat7b kat7b,kat7,LOC107598609,LOC107739754,LOC107708935,LOC107654043,LOC108443263 coding upstream 115123 983000 ~ 990248 (-)
g6pc1a.1 LOC107654044,LOC107598610,LOC107739755,LOC107708934,LOC107695523 coding upstream 131310 999187 ~ 1005075 (-)
aarsd1 aarsd1,LOC107739756,LOC107695514,LOC107708900,LOC107598654 coding upstream 142110 1009987 ~ 1017230 (-)
a1cf a1cf,LOC107654048,LOC107739758,LOC107695528,LOC107708930 coding upstream 177539 1045416 ~ 1056434 (-)
pcdh15b pcdh15b,pcdh15,LOC107654051,LOC107695531,LOC106578947,LOC106589399 coding upstream 349550 1217427 ~ 1374084 (-)
G84700 NA non-coding downstream 48811 759925 ~ 789003 (-)
LOC122355303 NA non-coding downstream 67916 766654 ~ 769898 (-)
G84666 slc35g1,si:ch211-197g18.2,LOC107598601,LOC107654036,LOC107664634,LOC107664593,LOC107557359,LOC107708939 non-coding downstream 174068 660089 ~ 663746 (-)
G84654 NA non-coding downstream 225967 610067 ~ 611847 (-)
G84547 NA non-coding downstream 359383 478023 ~ 478431 (-)
LOC122355070 NA non-coding upstream 79150 947027 ~ 979785 (-)
G84793 prkg1,prkg1b,LOC107695529,LOC107654050 non-coding upstream 197056 1064933 ~ 1065345 (-)
LOC122355531 NA non-coding upstream 281062 1148939 ~ 1172741 (-)
G84795 NA non-coding upstream 293221 1161098 ~ 1182132 (-)
G84804 NA non-coding upstream 310658 1178535 ~ 1179376 (-)
ifnphi4 LOC107653919,LOC107732171,LOC107598640,LOC107664622,LOC107708945,LOC107557348 other downstream 285371 543246 ~ 552443 (-)
zgc:163073 LOC107653918,LOC107732170,LOC107708955,LOC107557349,LOC107664608,LOC107598675 other downstream 337595 496964 ~ 500219 (-)
LOC122355759 NA other downstream 347435 484438 ~ 490379 (-)
prr12a prr12a,LOC107708947,LOC107664611,LOC107598586,LOC107654018,LOC107732166 other downstream 477332 340273 ~ 360482 (-)
G84521 NA other downstream 516554 319330 ~ 321260 (-)
dlx4b dlx4b,LOC107739765,LOC107557342,LOC107708902 other upstream 21833 889710 ~ 897517 (-)
ank3b ank3b,LOC107654059,LOC107695539 other upstream 946206 1814083 ~ 1947412 (-)
jmjd1cb jmjd1c,LOC107745648,LOC107654065,LOC107695544 other upstream 1306111 2173988 ~ 2285052 (-)
G85232 LOC107663296,LOC107583514,LOC107733536 other upstream 1900031 2767908 ~ 2781353 (-)
LOC122355711 rara,LOC107700643,LOC107717720,LOC107565243,LOC107563215,LOC107719850,LOC108434941,LOC108261354,LOC107554136,LOC107737746,LOC108276117 other upstream 2221752 3089629 ~ 3103315 (-)

Expression


Co-expression Network