chac2 (chac2,LOC107749368,LOC107686371)


Basic Information

Item Value
gene id chac2
gene name chac2,LOC107749368,LOC107686371
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 10610648 ~ 10613502 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253136.1
CTCCTAGTAACAAAGACTAGCACTCTGTTCATAGATTCGACTAAATTAACGCAGCACGGTTTTTAACatagatatgtatataattttttagcGAAATCATATATAAACAGTACTGCGCTGTGTGTACGGCGGCTTGTAAATTAAAAGGCCACGGATGTGAGACATATTTTCGGCCAGATCTGTGTCTGACCTCGGCAAGTAACGTCCTGACTTTCTTTTGTACTCTTTAGCATATTAATTACCGCATTGTCCACACTTATGCCAACGGTGTCGACATACCTAACCACACTCGTGAGCGCCGCACGAGCCCTAAAAAATCCCGTCCATCGACATACGTGTGGAGTATGTGTTCAGACACACCGTGAGCTGTCAGCAGGAAGCATGTGGGTTTTTGGTTACGGCTCTTTGATTTGGAAAGTTGACTTTCCGTACGAGGAGAAACGAGTGGGTTTCGTCAAAGGTTTCAGTCGCAGGTTCTGGCAGGGAAGCACGGATCATCGCGGGGTGCCCGGGAAGCCTGGGCGAGTGGTGACATTAATAGAGGACCCCGAGGGCTGCGTATGGGGCGTTGCTTATAAATTGCCGTCAGGCCGAGAAAATGAAGTGAAAGAGTATCTGGACTACAGAGAGAAAGGCGGCTATGGGGTGATCACCGTTACCTTTTATCCCAAAGATGAAGAACATCAACCAATGCGGGACACATTGCTCTACATTGGCTCCTGTGACAACCCGAATTACCTTGGCCCGGCACCTTTGGAGACAATTGCTCAGCAGATTGTGAAGTCCGTCGGCCCCAGTGGCAAGAATACAGATTACCTGTTTGAGCTGGCCGAGGCCCTCAGGCAGCTAATACCTGAAGACTTAGACGATCACCTGTTCTCTTTAGAGCGCCTTGTGAAGGAGCTGCAGAAGCAGGAGGAGATGGAGTGATCTGCTACAGTCCGCTTTGTCCTTAATCTTCTGAAAAACTCAGGAATTTAGTCCATTTTTTTGGTCCTCATATACAGATTATGATATCCGATGCATGCTAAAAGGGATTACCTGATAAAGCGTGAGATAAGCAGTACTTAAACcactgttatgtttttaaataggaTTATTTAATATGTGGTAGTCTCTACTGAATCTGCACTTGATTTACGATGTGACGTTTCACATCATTTGTCTCGCTTTAAAACTTCAGATACGAACCAAGAACTTAAAAGGATTTCGGTATATTGCACATAACGTTGTTACGTCCATGAAAATGTAAACGAAAGGACAGTTTATTTTTCAGAGGCTGGTTCATTTAACTCAGGATACTTGAATATGTTACAAAGCcatttcctatttatttttgaagttcCATGCCATCCTGATCTTCAATTAAGCCATAAGGTGAATCTCATTAACAAACATGCTTAAGTCACCGTATTACCcccaaatgtacaaaataattagaataaacCAAATTAAACGTTATTGAACCCTAGTTATCTTTCGTTGTGTGACGTTTTAATTACATGAAACCGTTTCATTTCCAACCAAATTCAAACTAACACTAACGGTGTACTTAAAATATTAgattgttttactttaatgtgtttttttattataattctaGTTATAaattatctatccatccatccatcatttgtGAAATTCACCCAAGCAAAGCTTTAATTTATCTctttttatgcataatttatcagttattgtttaaaaaaaaaagtcagaatcaTTGCACCTCCACTGTAGCACAAGTCTATTGTATTAACGATGTTCTGCGGACAGGATCTTCGACTTCACCACTGTAACTAGCTCATAATGATGACTTAATGACGGTTGCATATTTCTTGTGAGACCCAGAtaagaataattttaaaataaagcattgtgggagcataaaaaaaaa

Function

symbol description
chac2 Predicted to enable gamma-glutamylcyclotransferase activity. Predicted to be involved in glutathione catabolic process. Predicted to be active in cytoplasm. Orthologous to human CHAC2 (ChaC glutathione specific gamma-glutamylcyclotransferase 2).

NR:

description
PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2

GO: NA

KEGG:

id description
K07232 CHAC, chaC; glutathione-specific gamma-glutamylcyclotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253136.1 True 1894 mRNA 0.40 3 10610648 10613502

Neighbor

gene id symbol gene type direction distance location
LOC122355804 nrg3b,LOC107566665,LOC107573948,LOC107678479,LOC107689960 coding downstream 465919 10138438 ~ 10144729 (-)
LOC122355287 fam20cb,fam20c,LOC107734234,LOC107699871,LOC107669229,LOC107731385,LOC108432010 coding downstream 805138 9788025 ~ 9805510 (-)
LOC122355272 cpped1,LOC107584109,LOC107669238,LOC107554009 coding downstream 854601 9743392 ~ 9756047 (-)
LOC122355289 ercc4,LOC107734247,LOC107669240,LOC107692079 coding downstream 870120 9734537 ~ 9740528 (-)
LOC122355243 LOC107734216,LOC107669223,LOC107584111,LOC107692080,LOC107554034 coding downstream 876308 9713064 ~ 9734340 (-)
foxn2b LOC107698833,LOC107749364,LOC107550040,LOC107582787,LOC107728721,LOC107673647 coding upstream 286751 10900253 ~ 10915884 (-)
fbxo11b fbxo11b,fbxo11,LOC107728720,LOC107582786,LOC107550041,LOC107673644,LOC107698831,LOC108430631 coding upstream 305277 10918779 ~ 10931157 (-)
msh2 msh2,LOC107698830,LOC107582784,LOC107749362,LOC107550043,LOC107728724,LOC107673650 coding upstream 318360 10931862 ~ 10938013 (-)
socs5a LOC107582782,LOC107728716,LOC107698827,LOC107673648,LOC107550046,LOC107749358,LOC107550045 coding upstream 371540 10985042 ~ 10996581 (-)
rhoq rhoq,LOC107550049,LOC107582780 coding upstream 398970 11012472 ~ 11027430 (-)
G87164 NA non-coding downstream 4629 10605232 ~ 10606019 (-)
G87125 svila,svil,LOC107584371 non-coding downstream 28112 10578754 ~ 10582536 (-)
LOC122355705 nrg3b,LOC107678479,LOC108426474,LOC107689960,LOC108273971,LOC107566665,LOC107387893 non-coding downstream 165870 10409339 ~ 10444778 (-)
G87104 NA non-coding downstream 249234 10360877 ~ 10361414 (-)
G87055 NA non-coding downstream 843410 9763102 ~ 9767238 (-)
G87388 NA non-coding upstream 179561 10793063 ~ 10804738 (-)
G87376 NA non-coding upstream 203059 10816561 ~ 10864596 (-)
LOC122355137 NA non-coding upstream 255346 10868848 ~ 10894717 (-)
G87406 fshr,LOC107728706,LOC107582855,LOC107673646 non-coding upstream 282339 10895841 ~ 10896147 (-)
G87429 mta3,LOC107749351,LOC105904126 non-coding upstream 457747 11071249 ~ 11071765 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other downstream 670799 9311653 ~ 9939849 (-)
ormdl3 ormdl3,LOC107723636,LOC107657273,LOC107556587,LOC108273759,LOC102217224,LOC106521946,LOC102783025,LOC105936292,LOC107092838 other downstream 1121336 9481559 ~ 9489312 (-)
LOC122355288 LOC107660874 other downstream 1732517 8875617 ~ 8878131 (-)
trnar-ccu_66 NA other downstream 1923078 8687498 ~ 8687570 (-)
plbd1b LOC107578697 other downstream 1923100 8682443 ~ 8687548 (-)
cript cript,LOC107582781,LOC107728714 other upstream 391504 11005006 ~ 11006954 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other upstream 429386 11042888 ~ 11045889 (-)
G87489 NA other upstream 707921 11321423 ~ 11322603 (-)
G87569 NA other upstream 1219377 11832879 ~ 11835612 (-)
G87608 NA other upstream 1335038 11948540 ~ 11951155 (-)

Expression


Co-expression Network