slc4a1b (slc4a1b,LOC107569191,LOC107684772,LOC107753326,LOC108410807)


Basic Information

Item Value
gene id slc4a1b
gene name slc4a1b,LOC107569191,LOC107684772,LOC107753326,LOC108410807
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 2605131 ~ 2616287 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253149.1
TGTGTGTGCGTAGAGGTGTGTCTGATATCTGCAGGTGTACACAGACTTTATAAAGGTCTGCACACTTTTGTGAGGGGCTGTGACGGAGAATATTGCTTGAAAATTTGGGTCATTTATTGAAGATATAAGGCGTATGTAAATATGAATGAGTCGGGGAAGAACCCAAACCAGCAGAGCTATTGGCAGGAGATGGGCAGATGGGCGGGCTACGAGGAGACCTATGATGTCGAAGCGGGACGCTGGGGCCCGTCCCACATCTCCTACCTCACCTTCAAGAGCCTGGTGCAGATACGCAGGACAATGAACACGGgTTTAATAATGCTGGACCGAGAGGAGAAGACGCTTTCCGGTGTTATTGAGAAGGTTGTGGATGCCCTGGTTAGCAAAAAGGACATTCAACCAGGGGACAGAGATAAGGTTCTTCAAGCATTAATGCACAAACAGAGCCAGTCTGTGGAGACCCAGCCTCTGACTTCAGGCATGGAAATGGAAAAATTCTCTGTCACAGAGAAAAGCGACACAACTGGTACCGCAGAGGCCTCGATGGTGCTTGTAGGTGCTCTGGAGTTCCTCGAGAGGCCCACGATAGCATTCGTGCGTCTACGGGATGCTGTGGTGCTGGAGTCTGCGCTGGAAACTCCTGTACCTGTGCGATTCATCTTCATCCTGATTGGCCCAACCACAACTGACATGGACTATCATGAGTGTGGCCGAGCAATGGCAGCACTACTTGCTGACAAAGTATTTAACCAGGCAGCTTTCCAGGCTCAGAGTGACCGGGAGCTGACTGATGCTTTGGGAGACTTCATGGACTGCTGCATTGTGATTCCACCCACTGAGATTCAGGATGAGTCCATGCTAACGTCACTCATCCCCTTCCAGAAGAAACTACTGCAAGAGAGACTCCGTCCATCGGACCCCAAACTGCGCCTGGATGTCAAACCTCGCAAGCCTTCAAAATCCTCAGGACCACCTCCAGAAGATCCACTAGCACGTACTGGTGTTCCATTCGGTGGCATGATTAGAGACATGAAGAGACGCTATCAGTACTATGTCAGTGATATCACTGACGCTCTCAACGCTCAAGTTGTTGCTGCCATCATCTTCATCTACTTTGCTGCTCTCTCACCGGCCATCACCTTCGGAGGTCTCCTAGCTGATAAGGTGGACAACATGATGGGTGTTTCAGAGCTGATGATCTCCACTTCAGTGCTGGGCATTATCTTCTGCCTGATCGCTGCCCAACCTGTACTAGTTATCGGCTTTTCTGGGCCACTCCTGGTGTTTGAAGaggctttttttaatTTCTGTAAGTCTCAGGAGATTGAGTACATCGTAGGCCGAGTGTGGGTTGGCGCTTGGCTGGTGGTCATTGTTGTGGTCATTGTTGCTTTTGAAGGCAGCTTCCTGGTCCGCTTCATTTCCCGCTTCACTCAAGAGATCTTCTCCATCCTCATCTCCCTCATCTTTATCTATGAGACTTTTGCCAAACTTGGCAGGGTTTTCAAGGAACACCCTCTAATCCTGAATTATGAGCATTTGAACACTACAGCTGAGGACCCTTGGCACTCAGTCGTCAGCTATCAGAGATTACTGGACAATGCTACAGGCAATATGTCTGTCGTGAGGTCCATCACGCACCAGCCTTACCCCAACACAGCTCTTCTCTCCATGTGCCTCATGTTTGGCTGTTTCTCTATCGCATACTACCTACGCATGTTCAAGAACGGCAAATTCCTGCCAGGCAAGATTCGACGATTGCTTGGTGACTTTGGCGTTCCTATTGCAATTTTCCTTATGGTGGCTATCGATATCAATATTGAGGATACATACACTCAGAAACTGGTGGTGCCTAAGGGTCTCCAGGTGTCCAACCCTAAGATGCGGGGATGGTTAATCAACCCTATGGGTGAACACAAGCCCTTCCCCATATGGATGATGTTTGCCTCTGTTGTCCCAGCTATGTTGGtcttcatcctcatcttccTAGAGTCTCAGATTACCACGCTAATTGTGAGTAAACCAGAGAGAAAAATGGTCAAGGGTTCTGGCTTCCACATGGACCTTCTGATCCTGGTAAGCATGGGAGGTCTGAGTGCCATATTTGGCATTCCTTGGTTGAGTGCCGCAACTGTACGATCCGTATCTCACGCCAATGCCCTGACAGTCATGAGCAAGGGCCCAAAACCTGAGATCGAGAAGGTTCTGGAACAGAGAGTCAGTGGAGTAGTGGTGGCTTTGCTTGTTGgtctgtccaTTCTCATGGAGCCCATTCTAAAAATGATTCCGATTACAGCACTGTTTGGAATCTTCCTCTACATGGGAATCACATCCCTGAGTGGAATTCAGCTTTGGGACCGAATGCTGCTCCTCCTTATTCCCAAAAAGTATCACCCAAATGAACCTTATGCTACTAAGGTCAGCACCAACAGAATGCATGTTTTCACTGCTATCCAGATGGTGTGTCTGGCAGCCTTGTGGATGGTGAAATCAAGCCCTGTATCCCTGGCTCTACCGTTCATCCTGATACTCACCATCCCTCTGCGCATGTTTATGACTGGACGACTTTTCACTGAGCAAGAGATGAAATATCTTGACGGTGATGATGCAAAGGCGACATTTGAAGAGGAGCCAGGAGTGGATGTGTACTCTGAAACACAGATGccattataaatcatttttcacaATCAACGTTTTGGAGTGCAAAATTCTGACAAGATGATACCTAACTTCAGCCCCCCTCTAATGCAACTTTTGGTGTGTTTGGGGAAGGGGTTCTATGTTAATTGCTCTTTTAATGGTCCGTTACGGTTCTTCCAAGATGACATATCATGACATGCAAAATTTGGATGTACATTTAAGTGCCTTTTGTAACTTTTGCACTCGCATTCATTAGTTACTGTGTTATGAAAATGCACACAGAAGCAGCACAAAGATATGATATTGTTCTTGCatgataaagaaatatattttaataaattatttgactTGA
>XM_043253150.1
TGTGTGTGCGTAGAGGTGTGTCTGATATCTGCAGGTGTACACAGACTTTATAAAGGTCTGCACACTTTTGTGAGGGGCTGTGACGGAGAATATTGCTTGAAAATTTGGGTCATTTATTGAAGATATAAGGCGTATGTAAATATGAATGAGTCGGGGAAGAACCCAAACCAGCAGAGCTATTGGCAGGAGATGGGCAGATGGGCGGGCTACGAGGAGACCTATGATGTCGAAGCGGGACGCTGGGGCCCGTCCCACATCTCCTACCTCACCTTCAAGAGCCTGGTGCAGATACGCAGGACAATGAACACGGgTTTAATAATGCTGGACCGAGAGGAGAAGACGCTTTCCGGTGTTATTGAGAAGGTTGTGGATGCCCTGGTTAGCAAAAAGGACATTCAACCAGGGGACAGAGATAAGGTTCTTCAAGCATTAATGCACAAACAGAGCCAGTCTGTGGAGACCCAGCCTCTGACTTCAGGCATGGAAATGGAAAAATTCTCTGTCACAGAGAAAAGCGACACAACTGGTACCGCAGAGGCCTCGATGGTGCTTGTAGGTGCTCTGGAGTTCCTCGAGAGGCCCACGATAGCATTCGTGCGTCTACGGGATGCTGTGGTGCTGGAGTCTGCGCTGGAAACTCCTGTACCTGTGCGATTCATCTTCATCCTGATTGGCCCAACCACAACTGACATGGACTATCATGAGTGTGGCCGAGCAATGGCAGCACTACTTGCTGACAAAGTATTTAACCAGGCAGCTTTCCAGGCTCAGAGTGACCGGGAGCTGACTGATGCTTTGGGAGACTTCATGGACTGCTGCATTGTGATTCCACCCACTGAGATTCAGGATGAGTCCATGCTAACGTCACTCATCCCCTTCCAGAAGAAACTACTGCAAGAGAGACTCCGTCCATCGGACCCCAAACTGCGCCTGGATGTCAAACCTCGCAAGCCTTCAAAATCCTCAGGACCACCTCCAGAAGATCCACTAGCACGTACTGGTGTTCCATTCGGTGGCATGATTAGAGACATGAAGAGACGCTATCAGTACTATGTCAGTGATATCACTGACGCTCTCAACGCTCAAGTTGTTGCTGCCATCATCTTCATCTACTTTGCTGCTCTCTCACCGGCCATCACCTTCGGAGGTCTCCTAGCTGATAAGGTGGACAACATGATGGGTGTTTCAGAGCTGATGATCTCCACTTCAGTGCTGGGCATTATCTTCTGCCTGATCGCTGCCCAACCTGTACTAGTTATCGGCTTTTCTGGGCCACTCCTGGTGTTTGAAGaggctttttttaatGTTTTCAAGGAACACCCTCTAATCCTGAATTATGAGCATTTGAACACTACAGCTGAGGACCCTTGGCACTCAGTCGTCAGCTATCAGAGATTACTGGACAATGCTACAGGCAATATGTCTGTCGTGAGGTCCATCACGCACCAGCCTTACCCCAACACAGCTCTTCTCTCCATGTGCCTCATGTTTGGCTGTTTCTCTATCGCATACTACCTACGCATGTTCAAGAACGGCAAATTCCTGCCAGGCAAGATTCGACGATTGCTTGGTGACTTTGGCGTTCCTATTGCAATTTTCCTTATGGTGGCTATCGATATCAATATTGAGGATACATACACTCAGAAACTGGTGGTGCCTAAGGGTCTCCAGGTGTCCAACCCTAAGATGCGGGGATGGTTAATCAACCCTATGGGTGAACACAAGCCCTTCCCCATATGGATGATGTTTGCCTCTGTTGTCCCAGCTATGTTGGtcttcatcctcatcttccTAGAGTCTCAGATTACCACGCTAATTGTGAGTAAACCAGAGAGAAAAATGGTCAAGGGTTCTGGCTTCCACATGGACCTTCTGATCCTGGTAAGCATGGGAGGTCTGAGTGCCATATTTGGCATTCCTTGGTTGAGTGCCGCAACTGTACGATCCGTATCTCACGCCAATGCCCTGACAGTCATGAGCAAGGGCCCAAAACCTGAGATCGAGAAGGTTCTGGAACAGAGAGTCAGTGGAGTAGTGGTGGCTTTGCTTGTTGgtctgtccaTTCTCATGGAGCCCATTCTAAAAATGATTCCGATTACAGCACTGTTTGGAATCTTCCTCTACATGGGAATCACATCCCTGAGTGGAATTCAGCTTTGGGACCGAATGCTGCTCCTCCTTATTCCCAAAAAGTATCACCCAAATGAACCTTATGCTACTAAGGTCAGCACCAACAGAATGCATGTTTTCACTGCTATCCAGATGGTGTGTCTGGCAGCCTTGTGGATGGTGAAATCAAGCCCTGTATCCCTGGCTCTACCGTTCATCCTGATACTCACCATCCCTCTGCGCATGTTTATGACTGGACGACTTTTCACTGAGCAAGAGATGAAATATCTTGACGGTGATGATGCAAAGGCGACATTTGAAGAGGAGCCAGGAGTGGATGTGTACTCTGAAACACAGATGccattataaatcatttttcacaATCAACGTTTTGGAGTGCAAAATTCTGACAAGATGATACCTAACTTCAGCCCCCCTCTAATGCAACTTTTGGTGTGTTTGGGGAAGGGGTTCTATGTTAATTGCTCTTTTAATGGTCCGTTACGGTTCTTCCAAGATGACATATCATGACATGCAAAATTTGGATGTACATTTAAGTGCCTTTTGTAACTTTTGCACTCGCATTCATTAGTTACTGTGTTATGAAAATGCACACAGAAGCAGCACAAAGATATGATATTGTTCTTGCatgataaagaaatatattttaataaattatttgactTGA
>XM_043253151.1
AGATAAGGTTCTTCAAGCATTAATGCACAAACAGAGCCAGTCTGTGGAGACCCAGCCTCTGACTTCAGGCATGGAAATGGAAAAATTCTCTGTCACAGAGAAAGTAAACACAGAGCGACACAACTGGTACCGCAGAGGCCTCGATGGTGCTTGTAGGTGCTCTGGAGTTCCTCGAGAGGCCCACGATAGCATTCGTGCGTCTACGGGATGCTGTGGTGCTGGAGTCTGCGCTGGAAACTCCTGTACCTGTGCGATTCATCTTCATCCTGATTGGCCCAACCACAACTGACATGGACTATCATGAGTGTGGCCGAGCAATGGCAGCACTACTTGCTGACAAAGTATTTAACCAGGCAGCTTTCCAGGCTCAGAGTGACCGGGAGCTGACTGATGCTTTGGGAGACTTCATGGACTGCTGCATTGTGATTCCACCCACTGAGATTCAGGATGAGTCCATGCTAACGTCACTCATCCCCTTCCAGAAGAAACTACTGCAAGAGAGACTCCGTCCATCGGACCCCAAACTGCGCCTGGATGTCAAACCTCGCAAGCCTTCAAAATCCTCAGGACCACCTCCAGAAGATCCACTAGCACGTACTGGTGTTCCATTCGGTGGCATGATTAGAGACATGAAGAGACGCTATCAGTACTATGTCAGTGATATCACTGACGCTCTCAACGCTCAAGTTGTTGCTGCCATCATCTTCATCTACTTTGCTGCTCTCTCACCGGCCATCACCTTCGGAGGTCTCCTAGCTGATAAGGTGGACAACATGATGGGTGTTTCAGAGCTGATGATCTCCACTTCAGTGCTGGGCATTATCTTCTGCCTGATCGCTGCCCAACCTGTACTAGTTATCGGCTTTTCTGGGCCACTCCTGGTGTTTGAAGaggctttttttaatTTCTGTAAGTCTCAGGAGATTGAGTACATCGTAGGCCGAGTGTGGGTTGGCGCTTGGCTGGTGGTCATTGTTGTGGTCATTGTTGCTTTTGAAGGCAGCTTCCTGGTCCGCTTCATTTCCCGCTTCACTCAAGAGATCTTCTCCATCCTCATCTCCCTCATCTTTATCTATGAGACTTTTGCCAAACTTGGCAGGGTTTTCAAGGAACACCCTCTAATCCTGAATTATGAGCATTTGAACACTACAGCTGAGGACCCTTGGCACTCAGTCGTCAGCTATCAGAGATTACTGGACAATGCTACAGGCAATATGTCTGTCGTGAGGTCCATCACGCACCAGCCTTACCCCAACACAGCTCTTCTCTCCATGTGCCTCATGTTTGGCTGTTTCTCTATCGCATACTACCTACGCATGTTCAAGAACGGCAAATTCCTGCCAGGCAAGATTCGACGATTGCTTGGTGACTTTGGCGTTCCTATTGCAATTTTCCTTATGGTGGCTATCGATATCAATATTGAGGATACATACACTCAGAAACTGGTGGTGCCTAAGGGTCTCCAGGTGTCCAACCCTAAGATGCGGGGATGGTTAATCAACCCTATGGGTGAACACAAGCCCTTCCCCATATGGATGATGTTTGCCTCTGTTGTCCCAGCTATGTTGGtcttcatcctcatcttccTAGAGTCTCAGATTACCACGCTAATTGTGAGTAAACCAGAGAGAAAAATGGTCAAGGGTTCTGGCTTCCACATGGACCTTCTGATCCTGGTAAGCATGGGAGGTCTGAGTGCCATATTTGGCATTCCTTGGTTGAGTGCCGCAACTGTACGATCCGTATCTCACGCCAATGCCCTGACAGTCATGAGCAAGGGCCCAAAACCTGAGATCGAGAAGGTTCTGGAACAGAGAGTCAGTGGAGTAGTGGTGGCTTTGCTTGTTGgtctgtccaTTCTCATGGAGCCCATTCTAAAAATGATTCCGATTACAGCACTGTTTGGAATCTTCCTCTACATGGGAATCACATCCCTGAGTGGAATTCAGCTTTGGGACCGAATGCTGCTCCTCCTTATTCCCAAAAAGTATCACCCAAATGAACCTTATGCTACTAAGGTCAGCACCAACAGAATGCATGTTTTCACTGCTATCCAGATGGTGTGTCTGGCAGCCTTGTGGATGGTGAAATCAAGCCCTGTATCCCTGGCTCTACCGTTCATCCTGATACTCACCATCCCTCTGCGCATGTTTATGACTGGACGACTTTTCACTGAGCAAGAGATGAAATATCTTGACGGTGATGATGCAAAGGCGACATTTGAAGAGGAGCCAGGAGTGGATGTGTACTCTGAAACACAGATGccattataaatcatttttcacaATCAACGTTTTGGAGTGCAAAATTCTGACAAGATGATACCTAACTTCAGCCCCCCTCTAATGCAACTTTTGGTGTGTTTGGGGAAGGGGTTCTATGTTAATTGCTCTTTTAATGGTCCGTTACGGTTCTTCCAAGATGACATATCATGACATGCAAAATTTGGATGTACATTTAAGTGCCTTTTGTAACTTTTGCACTCGCATTCATTAGTTACTGTGTTATGAAAATGCACACAGAAGCAGCACAAAGATATGATATTGTTCTTGCatgataaagaaatatattttaataaattatttgactTGA

Function

symbol description
slc4a1b Enables anion:anion antiporter activity and bicarbonate transmembrane transporter activity. Acts upstream of or within calcium ion import. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in basolateral plasma membrane. Is expressed in ball; gill; ionocyte; and sensory system. Human ortholog(s) of this gene implicated in congenital hemolytic anemia; hereditary spherocytosis; hereditary spherocytosis type 4; malaria; and renal tubular acidosis. Orthologous to human SLC4A1 (solute carrier family 4 member 1 (Diego blood group)).

NR:

description
band 3 anion exchange protein-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0015698 inorganic anion transport biological_process
GO:0015701 bicarbonate transport biological_process
GO:0042891 obsolete antibiotic transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005452 inorganic anion exchanger activity molecular_function
GO:0042895 obsolete antibiotic transmembrane transporter activity molecular_function
GO:0015106 bicarbonate transmembrane transporter activity molecular_function

KEGG:

id description
K24194 BOR; boron transporter

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253149.1 True 2992 mRNA 0.47 17 2605131 2616287
XM_043253150.1 False 2797 mRNA 0.47 16 2605131 2616287
XM_043253151.1 False 2592 mRNA 0.47 15 2605131 2613753

Neighbor

gene id symbol gene type direction distance location
atxn7l3b si:dkeyp-118b1.2,LOC107694074,LOC107745658,LOC107684755,LOC105909120 coding downstream 1439 2597896 ~ 2603692 (-)
smarcd2 smarcd2,LOC107684754,LOC107569192,LOC107560559,LOC107694073,LOC107753305 coding downstream 8240 2587744 ~ 2596891 (-)
psmc5 psmc5,LOC107745657,LOC107753303,LOC107684752 coding downstream 19312 2581058 ~ 2585819 (-)
trnal-uag_3 NA coding downstream 111340 2493710 ~ 2493791 (-)
snu13b snu13b,nh2l1,snu13,LOC105898651,LOC105031476,LOC106589607,LOC105910236 coding downstream 128735 2474996 ~ 2476396 (-)
LOC122355185 bicc1,bicc1b,LOC107653928,LOC107596591,LOC107746462,LOC107727063,LOC107695510 coding upstream 88001 2704288 ~ 2708929 (-)
LOC122355585 arid5b,LOC107654064,LOC107593511,LOC107739058,LOC107695542 coding upstream 233689 2849976 ~ 2860000 (-)
LOC122355586 LOC107732308,LOC107581964,LOC107692781,LOC107707128,LOC107697371,LOC107587198 coding upstream 253834 2870121 ~ 2877710 (-)
LOC122355866 grid1,grid1a,LOC107716022,LOC107654854,LOC106577051 coding upstream 388142 3004429 ~ 3083353 (-)
LOC122355769 grid1,grid1b,LOC107598047,LOC106577051,LOC106607602 coding upstream 777368 3393655 ~ 3397535 (-)
G85165 LOC107745672,LOC106958681,LOC103481982 non-coding downstream 28225 2573311 ~ 2576906 (-)
G85177 NA non-coding downstream 97170 2506178 ~ 2507961 (-)
G85174 NA non-coding downstream 118927 2485194 ~ 2486204 (-)
G85173 NA non-coding downstream 121204 2482247 ~ 2483927 (-)
G85119 NA non-coding downstream 293660 2311243 ~ 2311471 (-)
G85214 NA non-coding upstream 62435 2678722 ~ 2679291 (-)
G85216 NA non-coding upstream 63757 2680044 ~ 2680317 (-)
G85235 NA non-coding upstream 175633 2791920 ~ 2792523 (-)
G85250 NA non-coding upstream 252853 2869140 ~ 2869689 (-)
G85257 NA non-coding upstream 302898 2919185 ~ 2947389 (-)
jmjd1cb jmjd1c,LOC107745648,LOC107654065,LOC107695544 other downstream 320079 2173988 ~ 2285052 (-)
ank3b ank3b,LOC107654059,LOC107695539 other downstream 657719 1814083 ~ 1947412 (-)
dlx4b dlx4b,LOC107739765,LOC107557342,LOC107708902 other downstream 1707614 889710 ~ 897517 (-)
ifnphi4 LOC107653919,LOC107732171,LOC107598640,LOC107664622,LOC107708945,LOC107557348 other downstream 2052688 543246 ~ 552443 (-)
zgc:163073 LOC107653918,LOC107732170,LOC107708955,LOC107557349,LOC107664608,LOC107598675 other downstream 2104912 496964 ~ 500219 (-)
G85232 LOC107663296,LOC107583514,LOC107733536 other upstream 151621 2767908 ~ 2781353 (-)
LOC122355711 rara,LOC107700643,LOC107717720,LOC107565243,LOC107563215,LOC107719850,LOC108434941,LOC108261354,LOC107554136,LOC107737746,LOC108276117 other upstream 473342 3089629 ~ 3103315 (-)
G85366 NA other upstream 642244 3258531 ~ 3299688 (-)
kcnh6b LOC107684759,LOC107753307,LOC107573422 other upstream 1601117 4217404 ~ 4230039 (-)
LOC122355775 NA other upstream 1681580 4297867 ~ 4305215 (-)

Expression


Co-expression Network