LOC122355129 (LOC107560557,LOC107753319,LOC107735415,LOC107694068)


Basic Information

Item Value
gene id LOC122355129
gene name LOC107560557,LOC107753319,LOC107735415,LOC107694068
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 4232549 ~ 4237229 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253162.1
GACGCTTGTAGTGTTGCTGCTTCTTGGGCTCGTGTCGTGTGTGATAAAATAGCTCTGGATTATAGAAGAACTGTGGTATAAATGCCCTTTTTTTCATTTCGCAAGTAACAGTCACAGAACACATTAAATAACGGTCGTAAAAACGTTTTTGAAACAATCCGATTGAACCTGCACGTTAATAATTCAAGTCTTCTAAGTTAGGTCAAAgacattatgacattttaaaatttgaccAAAGTCGTTTGCTTTGGTTACGCGTTTGGCCGCGCGTCTGTTTAAAGAAGGAAATGCAATGTTAGGAGACATGATCCTGAGGGCTTTCAGACTGTCAGTGAGAGTGTCTGCAGTGTTTCAGAGCGGCTGTCAGTGTCCAGCCCTCTATTCCTGCAGAACACTGCACTCCAGCCCTGCGCTCTGGGCAGGACACAACAAATGGTCCAAAGTAAAGGACATTAAAATCCCCAAAGATGCTGCTCGAGCCCGGATGATTACCAAGTACACCATGATGATCAGGATTGCAGTAAGAGAGGGAGGACCTAATCCAGAATTTAATATTGCTTTGGCACAACTTCTAGAGCAGTGTCGGAACAGGAATCTACCCAAAGCCACCATAGAAGGAGCTATAAAAGGAAAGCCAGGAGTACAGCATGTCTACGAGGCCACGGGACCGGGCGGGTGCAAGCTGCTCGTTGAGGTTTTTACTGACAACAACACACGGTCCCATCAAGAAATCAAACGTATCTTGAACAAACATGGTGGGGCGCTGTGTGAAGGAGCGCGCAAGAACTTTGACAGGAAAGGTGTTGTGGTGGCATCCAGGGACGGGATCTTCTCTGAGAAAGCTCTGGAGCTGGCCATTGAGGCAGGAGCTGAAGATGTGCAGGAGacggaggacgaggaggagcaACCTGTACTGCAGTTTATCTGTGCCGCTGCGTCTATGAAGACTGTGAAAGACACTCTAGAAAGTCTGGGGGTACACACGCTTTCATCCAGTCTGGAGTTTGTCTCTCACACCCCGTCTCTCCTGACTCAGACTCAGCTAGAGAACGCGTCCACCCTGGTGGAGGCTCTCAGTGACTGCCCTTACGTGGTCCGGGTGTGGGATAACATCCATGCACAGACCTAGAGATCACGATAAGTCAACCGACACATGGAAGAACTCACAGATGGATGATCTAAGAGCAACTGAATGAAATGGACCCGTTTGGCCAAAATTTATTGGACTTCACttggatttttttgtgtgatggtaaataaataaatatatatcttttatcatggcaataaagaaaataatcatA

Function

NR:

description
PREDICTED: translational activator of cytochrome c oxidase 1-like

GO: NA

KEGG:

id description
K18189 TACO1; translational activator of cytochrome c oxidase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253162.1 True 1304 mRNA 0.46 5 4232549 4237229

Neighbor

gene id symbol gene type direction distance location
dnajc9 dnajc9,LOC107694081,LOC107684784,LOC107751706,LOC107753312 coding downstream 61627 4167639 ~ 4170922 (-)
p4ha1a p4ha1a,LOC107684765,LOC107753313,LOC107751705,LOC107560551 coding downstream 78674 4139060 ~ 4153875 (-)
ppp1r9bb ppp1r9bb,LOC107741705,LOC107684769,LOC107675672,LOC107713069,LOC107598037,LOC107576248 coding downstream 125305 4088710 ~ 4107244 (-)
trnal-uag_48 NA coding downstream 152367 4080101 ~ 4080182 (-)
trnal-aag_57 NA coding downstream 153354 4079113 ~ 4079195 (-)
LOC122355389 grid1b,grid1,LOC106578986,LOC106589364 coding upstream 692584 4929813 ~ 5055115 (-)
ccser2b LOC107716476,LOC107653247,LOC107727960,LOC107569472,LOC107674460 coding upstream 1043152 5280381 ~ 5330233 (-)
pelo pelo,LOC107653258,LOC107674509 coding upstream 1123135 5360364 ~ 5367143 (-)
emc9 emc9,LOC107716469,LOC107551848,LOC107674563,LOC107727956,LOC107653261 coding upstream 1178670 5415899 ~ 5419866 (-)
ghdc ghdc,LOC107556765,LOC107727961,LOC107716443,LOC107577004 coding upstream 1240293 5477522 ~ 5486280 (-)
G85515 NA non-coding downstream 44212 4183582 ~ 4188337 (-)
G85511 NA non-coding downstream 56283 4175990 ~ 4176266 (-)
G85487 NA non-coding downstream 57326 4117805 ~ 4175223 (-)
G85435 NA non-coding downstream 271196 3960763 ~ 3961353 (-)
G85389 NA non-coding downstream 511526 3615842 ~ 3721023 (-)
G85541 NA non-coding upstream 30774 4268003 ~ 4269616 (-)
G85545 NA non-coding upstream 38108 4275337 ~ 4284935 (-)
G85551 NA non-coding upstream 74224 4311453 ~ 4311904 (-)
G85553 NA non-coding upstream 75350 4312579 ~ 4313048 (-)
G85569 NA non-coding upstream 174111 4411340 ~ 4412200 (-)
kcnh6b LOC107684759,LOC107753307,LOC107573422 other downstream 2510 4217404 ~ 4230039 (-)
G85366 NA other downstream 932861 3258531 ~ 3299688 (-)
LOC122355711 rara,LOC107700643,LOC107717720,LOC107565243,LOC107563215,LOC107719850,LOC108434941,LOC108261354,LOC107554136,LOC107737746,LOC108276117 other downstream 1129234 3089629 ~ 3103315 (-)
G85232 LOC107663296,LOC107583514,LOC107733536 other downstream 1451196 2767908 ~ 2781353 (-)
jmjd1cb jmjd1c,LOC107745648,LOC107654065,LOC107695544 other downstream 1947497 2173988 ~ 2285052 (-)
LOC122355775 NA other upstream 60638 4297867 ~ 4305215 (-)
trnal-uag_49 NA other upstream 108156 4345385 ~ 4345467 (-)
trnal-uag_50 NA other upstream 110469 4347698 ~ 4347779 (-)
trnal-aag_58 NA other upstream 110633 4347862 ~ 4347942 (-)
trnal-uag_51 NA other upstream 111636 4348865 ~ 4348946 (-)

Expression


Co-expression Network