mylpfb (mylpfb,LOC107571443,LOC107674915,LOC108443170,LOC102793118,LOC101482131,LOC108274226,LOC102196412)


Basic Information

Item Value
gene id mylpfb
gene name mylpfb,LOC107571443,LOC107674915,LOC108443170,LOC102793118,LOC101482131,LOC108274226,LOC102196412
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5875085 ~ 5878221 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253168.1
TGTTCAGGCTAAAGTTAGTACACCCAGACTGGTATATAAGAACCCAGAGGGGAACTGAGAAGATGTCAGTCACATCAGCGTGCTGTATACTTCCCCTCTTTTGACCAACTGCAAAAACTTTGAGATgGCACCCAAGAAGGCCAAGAGGAGGCAGCAGGCAGAGGGCGGCAGCTCTAATGTCTTCTCCATGTTTGAGCAGAGCCAGATTCAGGAGTACAAGGAGGCTTTCACAATCATTGACCAGAACAGGGATGGTATTATCAGCAAGGACGATCTGAGAGATGTGCTGGCCTCCATGGGTcagttaaatgtgaaaaatgaggAGCTGGAAGCTATGGTCAAAGAGGCCAGTGGCCCCATCAACTTCACTGTGTTCCTCACCATGTTTGGTGAGAAGCTGAAGGGCGCTGATCCTGAGGATGTTATCGTAAGTGCTTTCAAAGTTCTGGACCCTGAAGCTACAGGCACCATCAAGAAAGAATTcattgagGAACTCCTGACCACCCAGTGCGACAGGTTTACCGCTGAGGAGATGAAAAATCTTTGGGCTGCCTTCCCTCCAGATGTGGCTGGCAACGTAGACTACAAGAACATCTGCTACGTCATTACACACggagaagagaaagaggaagaataAGTCCATCAACCATCTCTCTACCTCCTATCATTACCACAACATCCTGTTACATGTTCAGTCTTCCCATGGTCTATCTGTCCTTTCAAAGAAAGATGTTTCTAAATTGGAGGTCTGTTAGAATTTGGGCTGTCTGAATGTGAGTCACATGGAGCTAATgtgattattttcaataaaataatccaaaatCACAATCTCTCCATTCTCTCTGCTATTGTTTCCCTTCATAATTGTATAAGCAGAGGAGATATTTAAAGAGATGGCGCATCTCTGTAACAGAGTGCCACCTTCTCTATCAATGTCTCCCATTTGTTTTCTTGGAGAgacagaaatattaagaaagaaagacatttagCAGTAAAAGAAGACACAGAGGATAACAAGGTGAGGATgaggaaaagaaacaaaagaaaacatctttGTTTTTACTTCCCCTCCCCTGTTTACTCCTCCATTCCAAAGTCctattttcttgcatttttctttcctttctcttaATTCATCTCTTTGTCATCAAAATCACCTGTAACTCAAAgataacacaaataaaagcatctAAATCTTT

Function

symbol description
mylpfb Predicted to enable calcium ion binding activity. Is expressed in mesoderm; musculature system; myotome; and somite. Human ortholog(s) of this gene implicated in distal arthrogryposis type 1c. Orthologous to human MYLPF (myosin light chain, phosphorylatable, fast skeletal muscle).

NR:

description
sesquipedalian-1 isoform X1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K12758 MYLPF; fast skeletal myosin light chain 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253168.1 True 1199 mRNA 0.43 6 5875085 5878221

Neighbor

gene id symbol gene type direction distance location
pkmyt1 pkmyt1 coding downstream 112474 5748277 ~ 5762611 (-)
sult1st6 sult1st6,LOC107674799,LOC107708285,LOC107574469 coding downstream 128555 5736592 ~ 5746530 (-)
avl9 avl9 coding downstream 141797 5703313 ~ 5733288 (-)
buc2l NA coding downstream 184696 5685526 ~ 5690389 (-)
aclyb LOC107727950,LOC107556756,LOC107674696,LOC108431393 coding downstream 216140 5628746 ~ 5658945 (-)
neurod2 LOC107571318,LOC107676581,LOC107732719,LOC107701796,LOC107568320 coding upstream 139770 6017991 ~ 6022156 (-)
LOC122355417 adprh,LOC108411014,LOC108274007,LOC105894051,LOC107726130,LOC106579059,LOC107571852 coding upstream 319261 6197482 ~ 6280348 (-)
hexim1 hexim1,LOC107733802,LOC107661096,LOC107662567,LOC107561639,LOC107751667,LOC107576140 coding upstream 1293175 7171396 ~ 7173368 (-)
acbd4 LOC107661095,LOC107733800,LOC107662569 coding upstream 1296397 7174618 ~ 7182834 (-)
kcnj19b si:dkey-100n10.2,LOC107584158,LOC107758432,LOC107661094,LOC108424892,LOC107727700,LOC108273498 coding upstream 1481162 7359383 ~ 7365015 (-)
G85893 NA non-coding downstream 36128 5838559 ~ 5838957 (-)
G85892 NA non-coding downstream 37411 5837372 ~ 5837674 (-)
G85891 NA non-coding downstream 53907 5820349 ~ 5821178 (-)
G85889 tgfb1i1 non-coding downstream 60639 5810657 ~ 5814446 (-)
G85868 NA non-coding downstream 143995 5727304 ~ 5731090 (-)
G85922 NA non-coding upstream 79357 5957578 ~ 5957779 (-)
G85923 NA non-coding upstream 80074 5958295 ~ 5958527 (-)
LOC122355182 NA non-coding upstream 94252 5972473 ~ 5981072 (-)
G85929 NA non-coding upstream 109640 5987861 ~ 5988339 (-)
G85934 NA non-coding upstream 151512 6029733 ~ 6030024 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other downstream 448574 5423084 ~ 5426511 (-)
G85779 atp2a1l,LOC107551849,LOC107716472,LOC107653256,LOC108274121,LOC107094295 other downstream 478173 5322478 ~ 5396912 (-)
LOC122355055 LOC107668612,LOC107583503,LOC107750859,LOC107717092,LOC107671135,LOC107559032,LOC107552862 other downstream 1458188 4412573 ~ 4416897 (-)
trnal-uag_71 NA other downstream 1478592 4396412 ~ 4396493 (-)
trnal-aag_72 NA other downstream 1481930 4393074 ~ 4393155 (-)
G85925 NA other upstream 106768 5984989 ~ 5987780 (-)
G85930 LOC107711793,LOC107755027 other upstream 112692 5990913 ~ 6012111 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other upstream 172947 6051168 ~ 6078068 (-)
G86049 LOC101886504,LOC101886427 other upstream 792098 6670319 ~ 6671247 (-)
G86108 NA other upstream 1225659 7103880 ~ 7104218 (-)

Expression


Co-expression Network