XLOC_006647 (vrk2)


Basic Information

Item Value
gene id XLOC_006647
gene name vrk2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 26780004 ~ 26799244 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012834
ATTTCGCGGGACTGTCAATCATATTCAGGAAGTTGCAGTCGAGTCAATTGCAGAACTGAAACTGTTGATGAACTGATTTTAAATAGAAATTCGGCTGCTGTATAATATTTTGATTTCTTATTGAGTACTAACATACTTGTATAAGAAAGCGCTATTGTaatttttggtgttttttgtgAAACAGAAGTTAAATAAGACTAACTTAATGATTTAACTTTAGTTAATCGTATTTAGTCGTTCGGTAACGTTTTACATGAAATTTTAACATAATGCCTCCAAAGAAATACACACTACCTCGTCCACTTCCAGATGGATGCATTTTAACGGATTCAGAAAAGAAGAACTGGCGCATCGGGAAAATGATTGGAAAAGGAGGATTTGGGCTGATTTATTTGGCTTCTCAGGATGTGAATGTCCCTGTTCGAGATGATGCTGATTTTGTGATCAAAGtgGAATATCATGAAAATGGACCTTTATTCTCAGAACTCAAATTTTACCAACGGGCAGCAAAGCCAGAAACTATGAGCAAATGGATGAAGTCAAAACAACTGGGTTTTTTGGGTATCCCAACTTACTGGGGTTCTGGACTGACTGAAAGTAACGGAACAAGGTACAGGTTTATGGTAATGGATCGGCTGGGTACAGATCTGCAGAAAGTGTTAATAGATAATGGTGGACAACTGAGGAAGACCAGCGTGCTACAATTGGGTGTACTAATGCTGGATGTGCTGGAATATATTCATGACAACGAATATGTCCATGCTGATATTAAGGCTGCCAATCTCTTATTGGGATACAGAGATCCAAACAAGGTGTACTTGGCTGACTATGGTCTCTCATACAGATACTGTCCTAATGGCGAGCATAAAGAGTACAAAGAGAACCCCAAGAAAGGACACAATGGCACTATTGAGTACACAAGCATTGACGCTCACAAAGGAGTAGCCGCATCCCGGCGAGGAGACTTGAAGGTGTTGGGCTACTGCTTGCTTCACTGGCAGTGTGGAACTCTGCCCTGGCTCCCTTCTCTTAAAAATCCAGCTGAGGTTCAGGAGGCCAAGGCCAAGTTGATGTCTAACCTGCCAGATTCTGTTCTGAAGATGTCTACCTCCAGCTCAAGCATGGAGATTGCCCAGTTCCTGTCCAGAGTGAAAGACCTTGGCTATAATGAAAAGCCAGACTACCAGGCTCTCAGAATGGTTCTGTCTGCGACCGGGCTGCAGGGCCCATTGGACCTCTCCAGGCAGAGAGCTTCAGAGACGGTCAGGCCAACTACACAAAGGGCCGCAAGCCAACCCAAGACTACTGAGAAAAAAATGGGGAGATCAAAGCCTGCGGTGACAGCGGAGGAAATTGATGAGGAACAGTTGGGTGTGTCATCACCAAACAAAGTCTGGAGGAAGACCAAACCACAGACACACAAGCAGAGGCCAGTCAGAACTGACACAGCTGCTAAAGGAAGCATCAGGCAAAACCCTATGCCCTGTGAAAGTGATGAGGACGTCAGTGATGAATATGAGCCCCTGCCTCCACGAGTTCATCCTAGAACAAGAGCAGGAACCCGGCAGAGACAGGAACTTAAACAAgaaaaaaagaatgaaGATGTTTATGAGGGCAAGACCTGGATGACCAACAGGAGACAAAACCACCAGTATGACAACCAACAAAACAGTACTCGATCAATTGATGACAACTATGCAGTAGCCAGCAGTAAAGCTGACTACTGGAGGAGTTGTACTAACAAACACACCTGGGAGAAAACACAATGGGACGAAACTGATGATGAGGATGAAGACCACTGGGGAAGTGATGTATGTGAACTGAAAGTTAAACGGAATCACAGAAGAGGAAGTGGATTCGGAAAATCGATAAATCAGAGTAAATGGTCATTCAAAAGACTATTGACTTTCCTGGTTGTTCTGATATTAGCAGCTGTTGGTTGTTGGTTTTATCCTCGCTGGAGCCGTAATGCCACACAACGCTACTCTGAATGAACAGACTGTTGTTAAGCATTTCCTGTGACCATTTTCACAGTGATGGgctgaaataaatacataaagtaattttaggatttttttggTACACTAGGAGTGGACTGTATGTTTTAACCAATTTAATTGAGCATTGGAATAAAATGAATTTCTTTA
>TCONS_00012835
CAGGGCCCATTGGACCTCTCCAGGCAGAGAGCTTCAGAGACGGTCAGGCCAACTACACAAAGGGCCGCAAGCCAACCCAAGACTACTGAGAAAAAAATGGGGAGATCAAAGCCTGCGGTGACAGCGGAGGAAATTGATGAGGAACAGTTGGGTGTGTCATCACCAAACAAAGTCTGGAGGAAGACCAAACCACAGACACACAAGCAGAGGCCAGTCAGAACTGACACAGCTGCTAAAGGAAGCATCAGGCAAAACCCTATGCCCTGTGAAAGTGATGAGGACGTCAGTGATGAATATGAGCCCCTGCCTCCACGAGTTCATCCTAGAACAAGAGCAGGAACCCGGCAGAGACAGGAACTTAAACAAGTAAAGCCAGCAACAGAACACAAGCCAAATGCCAAATAGGCCACAGTCCTTCACTGATTTATTCTAACTGATGGATGTTTTAAAAGAGTCACAGGAAATGCAAAATTAGTTTAATGaatacgttttatttatttagagctTTTTCTAtgctcaaagcactttacaatcaacataaaagatttaaaaatataacaaaaaatatagtaAACAATGCAGAAAATGATGGATTCTGGCTCAGATGTATGTAGTATGCAGTGTTTATCGTTTGAAACAATAGTGTATTAACACATTAAGCCCTCATACTGTGTGGGAAAAAACTAACTTACTTTAACAACa
>TCONS_00012836
ACTGATTTTAAATAGAAATTCGGCTGCTGTATAATATTTTGATTTCTTATTGAGTACTAACATACTTGTATAAGAAAGCGCTATTGTaatttttggtgttttttgtgAAACAGAAGTTAAATAAGACTAACTTAATGATTTAACTTTAGTTAATCGTATTTAGTCGTTCGGTAACGTTTTACATGAAATTTTAACATAATGCCTCCAAAGAAATACACACTACCTCGTCCACTTCCAGATGGATGCATTTTAACGGATTCAGAAAAGAAGAACTGGCGCATCGGGAAAATGATTGGAAAAGGAGGATTTGGGCTGATTTATTTGGCTTCTCAGGATGTGAATGTCCCTGTTCGAGATGATGCTGATTTTGTGATCAAAGtgGAATATCATGAAAATGGACCTTTATTCTCAGAACTCAAATTTTACCAACGGGCAGCAAAGCCAGAAACTAGTAAGATATTTTGatccttttttaatttaaattctgtcaatATTCTGTAATGGAATTTCTGTTGTTATGTAAGGGGAAAAATCCATAAACACTGATTTTATTATTGCCAAAGGAGGTAGAAGCAGATGCAGCCTTTGGAGTAGTGTTGAATGGAAATCCTGAAGACCCCTCATCTTCATCTGAGAGTTCTCAAACATGGagtgcatgtcactgatgaagtGGCTATAGATGTAAATTAGCCTGGCTAGGC

Function

symbol description
vrk2 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and nucleus. Orthologous to human VRK2 (VRK serine/threonine kinase 2).

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1046 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and nucleus. Orthologous to human VRK2 (VRK serine/threonine kinase 2).

Ensembl:

ensembl_id ENSDARG00000021547

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012834 False 2147 mRNA 0.43 13 26780004 26799244
TCONS_00012835 False 702 lncRNA 0.42 3 26780568 26786084
TCONS_00012836 True 701 lncRNA 0.35 3 26797396 26799173

Neighbor

gene id symbol gene type direction distance location
XLOC_006644 NA coding downstream 76200 26009497 ~ 26703804 (-)
XLOC_006646 AL627132.1 coding downstream 212820 26567066 ~ 26567184 (-)
XLOC_006645 NA coding downstream 235188 26533354 ~ 26544816 (-)
XLOC_006643 NA coding downstream 926693 25846532 ~ 25853311 (-)
XLOC_006642 papolg coding downstream 937930 25824345 ~ 25842074 (-)
XLOC_006648 ccdc85a coding upstream 201150 27000394 ~ 27038407 (-)
XLOC_006649 NA coding upstream 428117 27227361 ~ 27227750 (-)
XLOC_006650 NA coding upstream 472094 27271338 ~ 27277709 (-)
XLOC_006651 ddx43 coding upstream 533412 27332656 ~ 27354033 (-)
XLOC_006652 kcnq5a coding upstream 579613 27378857 ~ 27621246 (-)
XLOC_006471 BX537274.2 misc downstream 16515099 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 25953779 825904 ~ 826225 (-)
XLOC_006640 NA non-coding downstream 1001189 25776389 ~ 25778815 (-)
XLOC_006654 CR356236.2 non-coding upstream 890916 27690160 ~ 27690276 (-)
XLOC_006655 NA non-coding upstream 1002171 27801415 ~ 27816641 (-)
XLOC_006658 CR392046.1 non-coding upstream 1380190 28179434 ~ 28179550 (-)

Expression


Co-expression Network