rpp30 (rpp30,LOC107669172,LOC107584236,LOC107753460,LOC107758421,LOC107683719,LOC107594207)


Basic Information

Item Value
gene id rpp30
gene name rpp30,LOC107669172,LOC107584236,LOC107753460,LOC107758421,LOC107683719,LOC107594207
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7552132 ~ 7554852 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253178.1
ATTCATGCTTCTGGTACACGCTTTAATGTGGAATGTGTTTGCGCATGTGGGTCTCAGTACATTCGTTGAACTGGTTTAGATCTATGTAATAAAAAGTAAGCTCGATATAGATTTGCGTTTGTGAAAATAGTGAAAAAATGTCTATGTTTATGGATCTAAACATCATCAGCAGTAATGATAAAAACAGACTCAAAAGCATCATAGAGACAGCAGCTCACCttggcTACTCAACAGTCGCAATCAACTACGTGGTTCAACCACAACAGAAGAAACAGGAAATCCCTAAGCCACAGAGTGTGTCAGACATATTTGATAAATTTCCTATAGTACAGgGCAAATCTTCTCCCATCAAAGTACTGAATCGATTGACCATCATAGTCTCTGATGCATCCCATTTTagacCAACTATTGAATACAAAAGCTTCGACCTCTTGGCAGTGTACCCAAAGACAGAGAAACTCTTTCATGCAGCCTGCATGATGTTTGATGTGGACATTATCTGCATTGCGGTAGCTGAAAAACAGCCTTTCCATTTTAAAAGGGCTCCAATTAATGGGGCTGTTGAAAGGGGCGTTTTCTTTGAGACATGTTATGCGGCAGCCATCAGAGACTCCACTATGAGGAGATACACCATTGCCAATGCCATCAGCCTAATGGAAGCCTGTAATGGAAAAAATGTCATCGTGTCCAGTGGAGCAGAAAAGCCGCTTGAGTTGAGGGGCCCCTATGACATTGCCAATTtAGGGCTTGTGTTTAGCCTGTCAGAGGGAGATGCCAAAGCTGCTGTTTCTACTAACTGTCGATCTGTCTTGCTTCATGGAGAGACGAGAGCCACTGCATCTGGTGTTGTTTACACCATGAAGAAACCAAAAACTCCCCAGAAGCAAGAAGAAGAGTCTCCGATATCTAAAAAGGCCAAAATTGAATTGGCATAGCCAGTATTGatgtgtattctttttttttttctttttttttttaaaatagaattattatttcttttctatttctttttcctCAAAATCTGGCAAAAGATGAtgcagatattttaaaaatgacatttatatcaAGCTTTATAATTGCAAACTAAATTTACAGATAACTTAAACGAGTACAAAATAGTTCTTCACATTATgcattctgtcataatttaccatttagaatatcaaaatcgtcTATCATTCATGCTTAGACTtagaatctgaatctgaattttTTCAGGCAATGCATTTCCATGTGAAGAGGAAGCTTTATGTTCTATTAAgtttctctttcctttctgcCTTATCTGagctttaataaaaagttaaagtaC

Function

symbol description
rpp30 Predicted to enable RNA binding activity. Predicted to be involved in RNA phosphodiester bond hydrolysis, endonucleolytic and tRNA processing. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of nucleolar ribonuclease P complex. Orthologous to human RPP30 (ribonuclease P/MRP subunit p30).

NR:

description
ribonuclease P protein subunit p30-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0008033 tRNA processing biological_process
GO:0005840 ribosome cellular_component
GO:0004540 ribonuclease activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K03539 RPP1, RPP30; ribonuclease P/MRP protein subunit RPP1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253178.1 True 1312 mRNA 0.38 11 7552132 7554852

Neighbor

gene id symbol gene type direction distance location
pcgf5b pcgf5b,LOC107584148,LOC107594155,LOC107669177,LOC107753439,LOC107758437,LOC107704022,LOC108410714 coding downstream 13567 7527076 ~ 7538565 (-)
hectd2 hectd2,LOC107584154,LOC107758436,LOC107594154,LOC107753452 coding downstream 30726 7504716 ~ 7521406 (-)
kcnj19b si:dkey-100n10.2,LOC107584158,LOC107758432,LOC107661094,LOC108424892,LOC107727700,LOC108273498 coding downstream 187117 7359383 ~ 7365015 (-)
acbd4 LOC107661095,LOC107733800,LOC107662569 coding downstream 369298 7174618 ~ 7182834 (-)
hexim1 hexim1,LOC107733802,LOC107661096,LOC107662567,LOC107561639,LOC107751667,LOC107576140 coding downstream 378764 7171396 ~ 7173368 (-)
LOC122355224 LOC107758424,LOC107594208,LOC107669182,LOC107584235,LOC107753458,LOC100536080,LOC107683721 coding upstream 18319 7573171 ~ 7578201 (-)
LOC122355798 LOC107753456,LOC107669160,LOC107584195,LOC107594195 coding upstream 50001 7604853 ~ 7608716 (-)
ifit10 LOC107584141,LOC107753434,LOC107669232,LOC107758418,LOC107594210,LOC107683722 coding upstream 54542 7609394 ~ 7611992 (-)
ifit9 LOC107669232,LOC107753434,LOC107584193 coding upstream 57283 7612135 ~ 7614367 (-)
stambpl1 stambpl1,LOC107594159,LOC107758441,LOC107669191,LOC107683716,LOC107584140 coding upstream 81991 7636843 ~ 7646791 (-)
G86232 NA non-coding downstream 29131 7522664 ~ 7523001 (-)
G86230 NA non-coding downstream 47671 7502577 ~ 7504461 (-)
G86210 LOC107758434,LOC107584156,LOC107669230,LOC107594152 non-coding downstream 65057 7480055 ~ 7487075 (-)
G86216 NA non-coding downstream 76002 7469027 ~ 7476130 (-)
G86201 NA non-coding downstream 166149 7380107 ~ 7385983 (-)
G86324 LOC107683711,LOC107669213,LOC107594157 non-coding upstream 33459 7588311 ~ 7590983 (-)
G86325 NA non-coding upstream 37949 7592801 ~ 7596998 (-)
G86330 ch25h,LOC107753436,LOC107584143,LOC107669234,LOC107683723,LOC107758440,LOC107594211 non-coding upstream 61016 7615868 ~ 7617213 (-)
G86334 NA non-coding upstream 76544 7631396 ~ 7634556 (-)
G86333 acta2,zgc:86709,actc1a,actc1,ACTC1,LOC107594158,LOC103374497,LOC108414322,LOC106531354,LOC107683715 non-coding upstream 79786 7634638 ~ 7636144 (-)
G86203 NA other downstream 163222 7388236 ~ 7388910 (-)
G86108 NA other downstream 447914 7103880 ~ 7104218 (-)
G86049 LOC101886504,LOC101886427 other downstream 880885 6670319 ~ 6671247 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other downstream 1474064 6051168 ~ 6078068 (-)
G85930 LOC107711793,LOC107755027 other downstream 1540021 5990913 ~ 6012111 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other upstream 779552 8334404 ~ 8359992 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other upstream 956551 8511403 ~ 8513265 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other upstream 1055700 8610552 ~ 8612445 (-)
plbd1b LOC107578697 other upstream 1127591 8682443 ~ 8687548 (-)
trnar-ccu_66 NA other upstream 1132646 8687498 ~ 8687570 (-)

Expression


Co-expression Network