tnrc6ba (LOC107584179,LOC107690060,LOC107692068,LOC107734183,LOC107731400,LOC107554046)


Basic Information

Item Value
gene id tnrc6ba
gene name LOC107584179,LOC107690060,LOC107692068,LOC107734183,LOC107731400,LOC107554046
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8556275 ~ 8570074 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253204.1
cgAGCAGTAAAATGGCCGACCGTCAACCAACTGACTTTACAGCGCTTTAAACATAGATTCCGCCTCTTTCGTTTACATTGtcgtatttcatatttaaaaactatagaAGGAGTGTTTTCGTGACTAGCTATTAGATTTTGATGGAGTGTTGCATTTCACGTTGCCTCAAAACCCAGAAATTCGCACTTAAGCACTTTAGCTGTAGCTAGAAGACTAGCTGCGGTGCATGTAATTCCTGAGgaaGGAGCATCAGGAAAGGGAACAGCAGTTCATGGAAgacaagaaaaggaaaaaggaagaTAAAAGGAAACGGGAAACCTCGCAGAAGGTTgcagagcaaaaaaataaagTGCCAGAATTGACCAAGCCTCCATCTGCACAGTCTCCTGCCACCCCCAACTCAGCTTCCCCCAGCCCTGGCCCCGTCCCCTCTTCAACCCCATCCGCTGCCACCCCGGCTGCTGGCGCCCTCCCTCAGGGTGGGAACAATGCTAAGCGGCCGGCGGTGGCCAACGGACAGCCCTCCCCCGGCACACAGAATTCTCAGCGCTACATGCCCCGTGAAGTGCCCCCTCGATTCCGTTGCCAGCAGGACCATAAAGTGCTACTGAAGAGGGGCCAGCCACCACTGTCCTCCATGCTGCTGGGGGGAGGCAACAGCGGGGGAGACAGCCCCAATGAAACAGTGGCTTCTGCCTCAGaagtcatgcaggtttggaatggcattGatcCAAGCCAGGGCCCCGTGGGTCCAGCTGCTCCCTCACTGCCCCATACGTCATCCTCCTCATCAATcgctgcttcttcttcttcttcaaattATGCAAATTCCATGTGGGGGACCAGCTCTGGCAGCCAACCCCTCTCTCAGGGCAGGGAAAAGGTGATAGTGGACCGATCGGACCTGGAGGAATGGCCCAGTATTGCTGCTGGGGATGGGTCAAAGGCGGGGGATACAGCAGGTACTGGAGGTGCGGACAGTAGTGGAATTCTGAACTGCAGCACCTCGTGGGGTGAGAGGCATCTCCAGCAGCAAGCGAAAATTGTGGGAGGAGGAAACGGGAGGAAAGGAGTGAATTCCGGCAGCCCCTCCCCACCCACATCCTCCGGTTCACCCAATGAATGTATGCAGCCTGGTAGTGTTTGGGCTTCATCCTCCCATGAACTCATAGGGGGGAATGCAGTAGCAGCAGGCTCATTGCCCCCCATATCCAAAGCTGCCCCTCTACCAGGGAGCTCCGATAGCTCCCTTGGTGTCAGCTGTGGGATTCCAGGTGCCAATTTTTCCCCTAATGCCAATCCCTCTGCTTGGCCAGCCCTGGTACAGGAAGGGGCTGGGACAGTTGCAACAGAGGGTGGCTCCTCTTCCCTCCAAAGCTCATCTTTGTCTGCCAGCAACCCTCTTTCTGTGAATCAAGCCTCTCATCAGCACCAACTTCACCAAATGCAATCCAGAGACAGAGAGCCACCCTGTGGAGAGTGGGGTGGTGCAGCACTGGAACCAGGAGCAGGACCAAAAAACACAGGAGTGGCAGAGGGGGCTGATATGGACTCTGGAAGCACAGGTGGAGGGGATGGCtccgcttcctcttcctcctccaccaGCTCATCATTGTGGAGAGCTCAGCCTTTCCCTGCAAACTCCAAAACGGGTGCCTCAAGGACTGAATCTTGGGAGGATGGAGCAGGAGGGAGCTCCGTGTCTGCTGAAGGTGGGAAAGCATGGGGTTTTGCCAGTCAGGAGGATCGAGGAGATTTGACGGGGGCAAGTGCGTGGGGAACAGGAAGTGGGGGTCAGACCTCCGGGGTATCTCAGGGAGCGTGGGGTGGGGACCATGTTTTGGTTGGGGAGTGGGGGGTGTCCAGTGGTGTCGGGGGTGTCAGCAATCCAAGTGGGAAAGACGGTTCGAGCAgtaacagcagcagcagcggcggcaGTGTCGGTAACCCGACGACTTCCTCCTCCACACCTTCAACTATGACAAGAGCTTGGGACAATCAGAAAGGAGTTGGGGATGTAGGAGCAGGAGACTTGAGTGAGTGGGGAGGCCAGGGTAGCAGAGGTGGGGGAGGTACCTCATCCTCCAGTGGTGGAGGAAACTCCAGAAGTGGCAATCAGCACCATGGCCACCACCGATCTCATCAACCTCCCAACCCTGAAGTGGCCTTACAGAATCTGCTTAGCCGGTCTGACCTGGACCCTAGAGTGCTGTCCAACTCTGGTTGGGGTCAGACGCAAATCCGTCAGAATGTGGCGTGGGATTTGGAGACAAGTGGTGGAGCGGCGGCACCAGGTGGATCAGACTCCTCCTCATCTACAATGACTGCACCTGCCCATGCTCAACCATACTCTGGTTTGTCTGGCACTACAACTACTGATCCATCTTCCTCCTCTCTGCTCCAAGGTCCAGCTCTGAATGCCAACTTGAACTCCAACTCCATCCTCGGGCCACCCGCTGTTTCACCTGGTGAAGGTTGGGATAACAGTAGTAGCAACAGCAGTTCTTCTTTGCATGCTCGAGGCCCTCCACCCTCGGGTGTCAATATCCAAAACCCTGGCGTCTCACAATCTGTAGGTGGTGTAGGTAGTTCAGCTGGTGGACAAGGCAAGCCATCCGGGGGTTGGGGAGGGACTGCTTCATCAGAAGGCCAAGGAAAAGGTTGGGAAAGCGAGGCACATGAATGGCGAGACCCTAGAGCAGGAAGCTCGTCAGGCAGGTGGGGAGATTTCCAAACAAAGGGTACTCCATCAACTGGAGGAAGTGGCTGGGGAGACAGACAGGAGGAGAAAGGAACAGGAGGTTGGAAAGAAATGGGACGGGGGGATGCGAGCAATTGGGGAACCAGAGGTAGCAGCGACTGGGGAGAGAATGATCCCAAATCATGCAGTGGGGGCTGGGGGGAAGGGAAGAGTGGTGGAGGTACTAGTGGCGACTCAGAAGTGGGTACATGGGGTAATTGGGATGAGGGAGCTCCTAGAGCGGCATGGGGAACTGGTGGTACAGGAGCGGGTGGAGACATGGGTGGCAAATCTCACCAAGGCTGGGGTGGGAAGATGCACCCGTCACAGATGCCAAACAGCCAATCGGCCTCACAGAAAGGCCCGGCacaacagcagcaacaacaatcACAGCCTCAGCAGTGTCAGCCGGTGGACACAGGGGCCATGCAAGGGGGCTGGGGGAGACCAACAGGTCCTTCAGCCCAGAGCCAAAGTTCAGGGTGGACTTCAGGGCCCATACCCCAACTTCCCAGTGGCTCTGGAGACACTTCAGAGCCCAGTGGTTGGGAGGAGCCTTCTCCACAGTCCATCAGCAGAAAAATGGAGATTGATGATGGAACAGCTGCTTGGGGTGACCCCACCAACTACAACAAAAGTGTCAACTTGTGGGATAAGAACAATGCCCCGTCTGGCCAGGCACAATCAGTGTCCCCTCAGCAAGGACCCCCAACCCTACAGCAACAGCCTCCTGGTAGAATGCCAACAGGCCTTGGGAATAGGGACATGAACCTTGCACATTCAACAAACAAGGGGCCAATAGCTTCTTCTGTATGGGGAGGTAGTGGCTCTCCTTCCAGTCCATGTGTGGACAATGGTACTGCAGCCTGGGGTAAACCTACTGAAGCACCCACTAGTTGGGGTGACACTGATGACAATAGCAAGGCACCAGGTTGGGGGGATCCCTCTACTAATCCAGTCAAGTCTGgtTCAAAGTCTATGCAAGAAGGTTGGGGTGAAGGAGAGGGATCAGTCAGTGCATCGCGTCACTCCAGctgggaggaggaggatgagagTGGTGGTGTATGGAACAGCACTGGTTCTCAAGGCAGCAGCTCCTCTTACAATTCTGGAAGCTGGGGAGCCAAGAAGGGCAACAAGGGTACCTTGAAGGGTGCAGGTGACTCTTGGATGAACCCAATGGCAAGACAGTTTTCAAACATGGGGATTCTGGGAGAGGACCCCAGTGGTCGTTCTTTGGATCTTGCCCCTGGTCCTCCACAGGACAAAAAGCTGGAAGGAGAGAAGCGTGGCATGGGCTTAAATGAGTACAATGGAGAGATGCGTAAAGGAGGACGTGGAGGGGGAGCAGGAGTAGTCTTCCGTTCACCTGGTTCCAAAGAAGTGGGGGCATGTGAACCTGGGCCTTATTATGACAAGGCGAGTGGTCAGTTGTTTAGTAGCGGAGGTGGGATGGCACCGACAAGGCATCAACCAGGGGTGCCTCCCATCAACCCATCAGTACGAGCGCAAGTGCCTCATCAGTTCCTGTCACCGCAGGTGCCAGGCTCTGTGCTGAAGCAGATGCCTCCTCCCAGTGGAGGTGTTGGAGGTGTTGGGGGAGGCATCTTTCCTCCACAGCTTTCCCCACAGCACATTGCCATGCTCAGCAGCATATACCCCCATCATATTCAGTTACAACTGGCCTGTCAGCTGCTACTTCAACAGCAAccacagcaacaacaacagcagcaactGCTGCAGAACCAGCGCAAGTTCCCCCCAAACATACGTCAACAAGCAGACCAACAACAGctcGCCAGAATAATGGCTGTTCTTCAGCAGCAgagacaacagcagcagcatgtAGGAGGCCCAGGAGGTGGCTCCAAACTATCTCCTTCTCACCTTGGTGGTAGTGGTCCAAAGATGCCAATGTCGGACCCCCTCTCACACCCTGGCTTGGCAGGATCTGTTGCAGACCTGCATCAAAAATCACAAGGAGCTTATTCTGGGTTTGGACCTGGAGTAAGCCTCTCTGGTCTGGAGTTGGGTCCCATGGTTGGAGGCCCAGCTGGACTTAAAGACAGTGGGGGGCAGCAGTCTCGTTTTAAGTGGATGATGGAAGGGCATTCCCCAGCCCCCTCACCTCCTGATAGCGCTCTCCATAAAAATGGTCCCATTGCTGCTCCTCTCAAAATGAGAGGCGGTTCCCCATATTCCCATATTGAGATGCTGGGAGGTGAGGGTCTGGGTGTGCCTCCACAGGGGCCGTCGGATCACTGGCACAGAAGTCCTGGAAACAAGATGGGCGCCAAGACTGGCACATCCAGCTGGCCTCCAGAGTTTCAACCAGGAGTGCCTTGGAAAGGAATTCAGAGTGTAGACCCTGAATCTGACCCTTATATGACCCCTGGAAGTATGCTGGGCTCATCAATGTCAAGCCTCAACGACACTGAGCACCAGTTGCTAAGAGACAACACAGAATCAAATCCCTCCCTCAACACCTTGCTGCCTTCACCTGGTGCCTGGCCTTACAGTGCCTCAGAGAGCCCCCTCAACAATGCACACAACCCAGCTAAGTACACAGACTACAAGCCCAGCTGGCCACTTGAGCCTATAGGGCACAACAAGCCTTGGAAGACCAATCGCAACAGCTCTCATCTGCCACGCCCACCTCCTGGACTGACCCATCAGAAACAGCCCTCTGTTTCTCCCTGGACGGGAGGAGGCCCACGATTGGGTAGAGGCTGGGGTGGCACTGGAGGCGGTCAAGAAAACAGATTTGGGCCTGGTTCTGCATGGAGTGATGGAGGAGCCTCTAAGGGGAGCTGCTGGCTGGTGTTGAGTAATCTTACCCCTCAGaTTGATGGCTCCACTTTGAGGACTATCTGTATGCAGCATGGTCCGCTTTTGACCTTTCACCTCGGTTTGACTCAAGGTAGTGCTCTGATTCGCTACAGTACTCGCCAAGAAGCAGCCAAAGCCCAGAGCGCACTTCACATGTGTGTTTTAGGTAACACCACAATCCTGGCTGAGTTTGTGAGCGAGGAAGAGGTTGCTCGCTATTTTGCACATACTCAGGCTGGAGCTGGTGGAAGCGGCAGTGGAGGGACTGGAGCTAGTGGCGTGGCTGTCTCTGGGCCGGCAGGTGTGACAGGGTCACCGGGGGCCGGGGCCGTGGGTACCATCAGTGCTGGGAGTGGTGAGCGAGAACGACCCGGAGTGGGGAGTTTGTCAACAGGTGGAAGCAACAACGCCGGCGGAACCGGGCCCTCTGGCTCAACCTGGCAGAGTTTAGAAGGTACAGGCAGCTCTCCTGACCCTGCCTCTGCCCAGGGAGCGGGCCTAAGTATTTTTGCCCAGTGGAGCAGCAACAGTGCGGGCGGAAGTGTGGGTGGCAACACTGGGGGCGTTGATCCTGGCAGGGCAGGGTTGTGGGGCGGCATGACTCCAGGGTACACAAGCAGCAGTCTGTGGGCGTCTCCAGCCATGGAAGATCGGCACCAGATGAGCAGCCCTGCAGCACTGTTGCCTGGAGACCTTCTGGGAGGAGGTGCAGACTCTATCTGACTGATGCAGACAAATACACATGCAGCagcaacatacacacacacacacacacacacacacacatataacagatatataaatataacagctATTCTCCTATATTATCACAGGTGCAGGAATATAGGATACATTAATCAGAATACAGGCGACTTGTGTACATGCCATCTGTCACTCAGAAGGGcgcataatgcataaatatacatcCAAGTATTTAGTATACATTATAACACCTATGTAGAAGAGATATAAAGGTAAGCACTCAAACATCAGATGCCAATAAACACTTACTAAGTGCTGAGAAGCAGACCGATTGCATTATGAATCCtagcaaaatgcattaatacaaaattatatagaCGACACTGGTTccaaatgtacacacactgtCATTTTTACCCATAGCAGTGTTTTCGAGCTCCCCATAACCCGATCTTCACAACACGGAAGCGTGGAGGAGCAGTGTGTGGAAGTCAGTCAGTACTTATACACGcgtacgcacacacaaacacatcccaTTTCTTCTTACTCTTAAATGAAGACTTCAGCAAGACTTGAACAGGACATGCAAACAGTTGGACTTAAATACTGACTCAACTGGATGAATCCTAAATCCTTGAGGTCATAAAGATCACACTCGCATACTGAGACGCTCTCACTCAGGCGTGCACTGTAAAGGAgaaaccagacaaaaaaaaaaaaaaaaaaaaaaaggacaaaatatgCATCATTCAATGTTCGTTGAACGCTCACGTTGTTACAGCTCCATTTTCATGCAGACTTAAATTACTCAAACACTGTTCTGATGTCTGACAAACTGTATCttgttgtctttatttttttttggtttgtttaaatggtgaaatccagatttttttttttcccaaacgctgacctcgtttttttttttttttttccttaattgAGTATGTTGTCATAATGACGATCACTTGGATGTTACTTAGCTGTACAAGGTGCCCTTTCTACCTGTGCGTGCATGAGTGAAGTCCCAGGTAATGGAGGCGACGTTCAGAGTGTTTGTGAGGCATCGATGAATGTGTGGCAGCCAGAGATTAACAAGCGTGGTGTATTTTCAAAGATCAGTGCTGGATTAGGGCGGTGAGTAAATGTATGAGTGACAGCTTATTTCAGGTGTTTGACGTCTACGTGTGCATGATACGTATGCAGGTGTGgctgtgtgtatgagtgtgacAGCAAGTTCAAGAACATTGGcactaattaatatttcttaagTTGTGGTTTTAGcagcctttttttgttttatatattgtcTGAAttgcaataattataataaagaaaaaagatttttttagaaGATGCAACCAACTGAAGGCATTCATACTGAAACATGAAACATGCCAAACCTTATTGTACCAAGCTGAGCTGGATGGGTGTTTTAGGAACACTTAAAAAGTTAccagttgtttatttttgttgttgtgtacCATTATAAATTAAGGCGGGCTTTATCACTCGTGTTCAGGTTTTTTGTTTCtgattttacaaaagaaattaatttaaaaaaaaaaaaagaacaagacaaTTAATAAAGgttgaatttaa

Function

NR:

description
PREDICTED: trinucleotide repeat-containing gene 6B protein-like

GO: NA

KEGG:

id description
K18412 TNRC6, GW182; trinucleotide repeat-containing gene 6 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253204.1 True 7873 mRNA 0.52 22 8556275 8570074

Neighbor

gene id symbol gene type direction distance location
csnk1e csnk1e,LOC107584103,LOC103024972,LOC107731422,LOC107690058,LOC107734231,LOC108431980 coding downstream 624 8550384 ~ 8555651 (-)
tmem184ba tmem184ba,LOC107690057,LOC107584104,LOC107554044,LOC107731404,LOC107692069 coding downstream 6442 8541219 ~ 8549833 (-)
tomm22 tomm22,LOC107690071,LOC107554024,LOC107734246,LOC107584213,LOC107692102,LOC107731386 coding downstream 21634 8531984 ~ 8534641 (-)
dmc1 dmc1,LOC107690066 coding downstream 25022 8528745 ~ 8531253 (-)
gspt1 gspt1,LOC107692072,LOC107690055,LOC107734224,LOC107554042 coding downstream 27801 8520500 ~ 8528474 (-)
sh3bp1 sh3bp1,LOC107692101,LOC107731399,LOC107690072,LOC107554025,LOC107734168,LOC107584210 coding upstream 21667 8591741 ~ 8600914 (-)
pdap1a pdap1a,LOC107734239,LOC107584100,LOC107690063,LOC107554049,LOC107731397 coding upstream 32136 8602210 ~ 8606138 (-)
slc16a8 slc16a8,LOC107734169,LOC107690073,LOC107584209 coding upstream 36563 8606637 ~ 8611224 (-)
cby1 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 coding upstream 41175 8611249 ~ 8612461 (-)
LOC122355698 phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 coding upstream 64818 8634892 ~ 8636912 (-)
G86775 NA non-coding downstream 18069 8535973 ~ 8538206 (-)
G86608 NA non-coding downstream 211666 8344336 ~ 8344609 (-)
G86606 NA non-coding downstream 216460 8339456 ~ 8339815 (-)
G86576 NA non-coding downstream 265865 8290080 ~ 8290410 (-)
G86553 NA non-coding downstream 357151 8198918 ~ 8199124 (-)
G86798 NA non-coding upstream 27320 8597394 ~ 8628972 (-)
G86807 NA non-coding upstream 53223 8623297 ~ 8626329 (-)
G86809 LOC107731413,LOC107584098,LOC107734194,LOC107663181 non-coding upstream 57020 8627094 ~ 8630207 (-)
G86825 NA non-coding upstream 105572 8675646 ~ 8747077 (-)
G86826 NA non-coding upstream 110031 8680105 ~ 8744645 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other downstream 43010 8511403 ~ 8513265 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other downstream 196283 8334404 ~ 8359992 (-)
G86203 NA other downstream 1167365 7388236 ~ 7388910 (-)
G86108 NA other downstream 1452057 7103880 ~ 7104218 (-)
G86049 LOC101886504,LOC101886427 other downstream 1885028 6670319 ~ 6671247 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other upstream 40478 8610552 ~ 8612445 (-)
plbd1b LOC107578697 other upstream 112369 8682443 ~ 8687548 (-)
trnar-ccu_66 NA other upstream 117424 8687498 ~ 8687570 (-)
LOC122355288 LOC107660874 other upstream 305543 8875617 ~ 8878131 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other upstream 741579 9311653 ~ 9939849 (-)

Expression


Co-expression Network