ccdc189 (LOC107566122,LOC107754089,LOC107675027,LOC107743779,LOC107563782,LOC107677867)


Basic Information

Item Value
gene id ccdc189
gene name LOC107566122,LOC107754089,LOC107675027,LOC107743779,LOC107563782,LOC107677867
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 12714251 ~ 12717184 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253216.1
CGCAAACgttagctttaaaataaatacattattgatTCGCAGACAATGTATATAATTATGGCAATTATTTGTCCCCTCTTTATTAatctaacataaaaaaaattgcttgcaCCCTCATTTAAAATTTCGCGGCGCTGTGGTTcgtgaatttcttttttaacagaagaaaaaaaaaatcaagttgcTAGGATACCATGCAACATACATACAGGTGGATCAGagcaacattttataaagcaGTTTTCAGACTGCCAGGGAAGACATGAAGCCTTTAGAGAACATCAGGgttGCCCAGCCTCCAAAAGCACGGGTGCTGTTATGGACTGATCTGAAACATAGTGACATGGAAGAGATTGAGAAGAGCAATTCCATATCAGAGATCGAAAGGATTTTGCTCCGTGCATTATTGGCCTCTGATGTGATGCAgccaaaacagaaaatactaCTTGAGCTGTACACAAATCTTGTGCTGTTCTCcaaagaacaacattttaatagaGAGCAAACTTCTGTACTCATCTCCATTATCAAAAACGTACATCAGTTTAACACAGAAACACCCCTCAACAACACAGATCTCTGTTTGACCTACTGCAGTGAACTTCTGCTATGCCATTCAGTCAGGAGGCCCCCTTTCAGCATTGACCTTTTCAGCTCGGAACAAGTGACAGACATTTTGTACTATTTCATCAACACGTATATgagacattattttttatacaaatacatttttacccCAGAGGTACAGCTGGACATATCTTTATCATATACTGGAATACCCGAGGACACGGATATAGAGGAAACTGCCCAGTCTGGGAGTGTTTCAGATGGCAGAAAAGAAACTGAGAGGGAGACAGAAATGAATGAAGAGGTTCCACAAAGTGCTGTAATGACGGCTACGGAGACGGCCAGTCTCGGACATGGTTCTTCTCCAGACTCTGAGCTAAGGACTTTTGTTCAAAAGGAAGTGAGGGATGAAGTGATGCGTTTGACTGCTCAGCTACAGCAACGGCTCCAGGACAGTGCCGATCAGCTAAATAATGCCATTAGTAAACTGGAGACCAACATTCAAGTGAAGAAGTAAGAAAATATGTCCCGCTTCTTTAGTTTTGGAAACcacttttttcaaaagaaaaacacacacaaaatacagtaattatatatatattttcatacatgTTTACCTGCTTAGAATTAGTACAGTACCTTGATGATTAATGGATAATGTCTAATCGACTGTGATAAAAAGAAACGAGTGGTAAAACATATTTAGAGGATAAAATGAAAGAAGCTTGTACACATGGTTttgtaatgatttaaataaaaacacactctcAGTAGGGTTACATAACTATAATGCTGTGTTTCAAGTATCTTATCCTTTGTATTGAAAGTCTTAAAGTCCACTCCACATTGTTAAATGTTCTCTGTCCCTCTATGGTTTAGTCTTTACCAACCTGGAATTGTTTTTGAAGCGTAAGAATGATAATACAATATGCTTTGTGTCAAAAACAGTGTAGACTAGAGAGCTCGATATTGAATGTTGAATTAAACAGAACTAAATTGTGAA

Function

NR:

description
coiled-coil domain-containing protein 189

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253216.1 True 1570 mRNA 0.38 9 12714251 12717184

Neighbor

gene id symbol gene type direction distance location
cbx1b cbx1b,cbx1,LOC107677876,LOC107743766,LOC107566057,LOC107563783 coding downstream 6077 12701248 ~ 12708174 (-)
si:ch211-194k22.8 si:ch211-194k22.8,LOC107565757,LOC107754091,LOC107743792,LOC107675005 coding downstream 25003 12685112 ~ 12689248 (-)
mrpl10 mrpl10,LOC107566794,LOC107754119 coding downstream 46272 12666115 ~ 12667979 (-)
osbpl7 osbpl7,LOC107565688,LOC107677882,LOC107743767,LOC107754093 coding downstream 49214 12654000 ~ 12665037 (-)
pdk2a LOC107754097,LOC107565668,LOC107568951,LOC107677886,LOC107743772,LOC103046317,LOC108426453 coding downstream 150212 12556682 ~ 12564039 (-)
znf646 znf646,LOC107754085,LOC107675018,LOC107743758,LOC107677879,LOC107563786,LOC107565918 coding upstream 20635 12737819 ~ 12746643 (-)
cd37 NA coding upstream 35535 12752719 ~ 12758921 (-)
si:ch211-214e3.5 LOC107754079,LOC107565766,LOC107675030,LOC107722448,LOC107689947,LOC107563792 coding upstream 129330 12846514 ~ 12855295 (-)
sh2d4bb LOC107754115,LOC107565991,LOC107675008,LOC107689965,LOC108273974,LOC107722446 coding upstream 162416 12879600 ~ 12886164 (-)
nrg3b nrg3b,LOC107678479,LOC107566665,LOC107689960,LOC107563798,LOC107754077 coding upstream 183751 12900935 ~ 13019703 (-)
LOC122355629 NA non-coding downstream 75515 12613150 ~ 12638736 (-)
G87746 NA non-coding downstream 226856 12438750 ~ 12487395 (-)
G87695 LOC107669482,LOC107552775 non-coding downstream 367185 12344898 ~ 12347066 (-)
G87660 NA non-coding downstream 561514 12152240 ~ 12152737 (-)
G87659 NA non-coding downstream 562616 12151299 ~ 12151635 (-)
G87860 gabrz,LOC108273489,LOC107675029,LOC107754081,LOC107565977 non-coding upstream 87512 12804696 ~ 12807646 (-)
G88003 NA non-coding upstream 648769 13365953 ~ 13368320 (-)
G88019 NA non-coding upstream 716710 13433894 ~ 13434125 (-)
G88034 nrap,LOC107755535,LOC107702452 non-coding upstream 741272 13458456 ~ 13459865 (-)
G88035 nrap,LOC107702452,LOC107755535 non-coding upstream 742961 13460145 ~ 13461245 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other downstream 38779 12649383 ~ 12675472 (-)
G87608 NA other downstream 763096 11948540 ~ 11951155 (-)
G87569 NA other downstream 878639 11832879 ~ 11835612 (-)
G87489 NA other downstream 1391648 11321423 ~ 11322603 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other downstream 1668362 11042888 ~ 11045889 (-)
G87845 LOC107675011 other upstream 34720 12751904 ~ 12752678 (-)
LOC122355808 LOC107684141,LOC107702421,LOC107581556,LOC107684142,LOC107708119,LOC107708127 other upstream 707124 13424308 ~ 13432195 (-)
entpd1 LOC107707825,LOC107755533,LOC107581561,LOC107702455,LOC107684037,LOC107566185 other upstream 806484 13523668 ~ 13540301 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107702422,LOC107750316,LOC107566231,LOC106949585,LOC106589326 other upstream 892236 13609420 ~ 13691340 (-)
srsf2a srsf2,LOC107702465,LOC107566380,LOC107684046 other upstream 1255698 13972882 ~ 13976511 (-)

Expression


Co-expression Network