LOC122355175


Basic Information

Item Value
gene id LOC122355175
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 439870 ~ 444825 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253220.1
acccagggcaccacttcttccgaagctactactattggcacctctactgtggaaagtacaaccttgggcaccacttcttccgacgCTATTACAGCTTTAGGTGAAACCACAAGGGCTCAAACTGACATTAGGCACCATTACTGTAGAGACTACAACACTTGGCAccatttctgcaaaacaaatcaaCGACGCTGGTTCCACTTTTGTAGAAAGTACTTCCCTGGTTACCACTTGTGCAGTACCCTTAGTAGTACATCTGTAGAAGCTAACAACTTGGACAATACTTCTCCAGAAACTACACTTGGAACCACTTCTGCACCATCAATTAGTTCAGGAGGAACTACAGCTTTAGGTGAAAGCACAATGGCTCAAACTGACATTAGGCACCATTACTGTAGAGACTACAACACTTGGCACCACttctgcaaaacaaatcaacaaCGCTGGTTCCACTTTTGTAGAAAGTACTTCCCTGGTTACCAATTGTGCAGTACCCTTAGTAGTACATCTGTAGAAGCTAACAACTTGGACAATACTTCTCCAGAAACTACACTTGGAACCACTTCTGCACCATCAATTAGTTCAGGAGGAACTACAGCTTTAGGTGAAAGCACAATGGCTCAAACTGACATTAGGCACCATTACTGTAGAGACTACAACACTTGGCACCACttctgcaaaacaaatcaacaaCGCTGGTCCCACTTTTGTAGAAAGTACTTCCCTGGTTACCACTTGTGCAGTACCCGTAGTAGTACATCTGTAGATGCTAACAACTTGGACAATACTTCTCCAGAAACTACACTTGGAACCACTTCTGCACCATTAGTTAGTTCAGGAGGAACTACAGCTTTAGGTGAAACCACAATGGCTCAAACTGACATTAGGCACCATTACTGTAGAGACTACAACACTTGGCACCACttctgcaaaacaaatcaaCGACGCTGGTCCCACTTTTGTAGAAGGTACTTCCCTGGTTACCACTTGTGCAGTACCCTTAGTAGTACATCTGTAGAAGCTAACAACTTGGACAATACCTCTCCAGAAACTACACTTGAAACCACTTCTGCACCATCAGTTAGTTTAGGAGGAACTACAGCTTTAGGTGAAACCACAATGGCTCAAACTGACATTAGGCACCATTACTGTAGAGACTACAACACTTGGCACCACttctgcaaaacaaatcaaCGACGCTGGTCCCAGTTTTGTAGAAAGTACTTCCCTGGTTACCACTTGTGCAGTACCCTTAGTAGTACATCTGTAGAAGCTAACAACTTGGACAATACTTCTCCAGAAACTACACTTGGAACCACTTCTGCACCATCAGTTAGTTTAGGAGGAACTACAGCTTTAGGTGAAACCACAATGGCTCAAACTGATATTAGGCACCATTACTGTAGAGACTACAACACTTGGCACCacttctgcaaaaaaaatcaacaacgCTGGTCCCACTTTTGTAGAAAGTACTTCCCTGGTTACCAATTGTGCAGTACCCTTAGTAGTACATCTGTAGAAGCTAACAACTTGGACAATACTTCTCCAGAAACTACACTTGGAACCACTTCTGCACCATCAGTTAGTTTAGGAGGAACTACAGCTTTAGGTGAAACCACAATGGCTCAAACTGATATTAGGCACCATTACTGTAGAGACTACAACACTTGGCACCACttctgcaaaacaaatcaacaaCGCTGGTCCCACTTTTGTAGAAAGTACTTCCCTGGTTACCACTTGTGCAGTACCCTTGGTACTATGTCTGTAGAAGCTACTAACTTGGATACTACTCAAGAAACTACACTTGGAACTACTTCTGCAATAACTGCAATGCTTGGCAGCACTTTTACTGAAACAATACCCTCAGTTAGTTCAAGAGGAGCTAAAGCTATAAGTACACCTCTCTTGCTGTTGTAACCCCAATGGCTCAAACTGCCATTAGGCACAATTACTGCAAAAACTACAATACTTGGTACCACttctgcaaaacaaatcaacaaCGCTGGTCCCACTTTTGTAGAAAGTACTTCCCTGGATACCACATGTGCAGTACCCTTAGTAGTACATCTGTAGAAGGTAGTAACGTGGATACTGCTCAAGAAACTACACTTGGAACCACTTCTGCAGTGATAATGCTTGATGGTACTTTTACTGAAGCACTCTCAGTTCTGTAGGTATACCTGTCTTAACGACTGCAGTTGAAACCAGAAGCTCAAACTTCCAGCAGGCACCCCTACGGTTGAAACTACTATTTGGGaccacttcttttaaaaaaaacacctccaCTTGTGCTCTATTTGTGCTCACTAGTACCTTCTTGAAACAACACCTACGTTCAACAGGAATAGTATTGGGATCATCAACTACACACATAACGGCAACCTTTGGAACAATTTGCTGTAGAAACCACAATGGCTTAGACTACCACTGCAGATGGAAAATTCTACCCTTGGTACCACTCCTGCAGAAATGGCACCCTTTTTTACTTCAGTAGCAATAGTAATGGAAACATTCACACCTGTAATAACTGCTAGAATGGTAATCTCAGCTATATTCCTGACTTCAATGTTTGCTGTGAAAATCAGTGTCTCAAACTACTATTTCTGCAGAAACTACAACCTGGAAATACTCTtggtttaaaatgttgaaaCCAAGATGGCTCTGAAAACTCTATGGAAACTTTCCCTGGGCATGACCTGGCCAGAAACTACTGCAATCTTGACATTCTCTTTGAAAAATGCACTTCTACATGAATCAGCTTTGCGGTTTGTGGTCGCAGTGGCCAATATGGAGGCTGCAGATTTAAAGAGATGCTGTGTGGTGTATGAACAGAACTGTTATTCAGTTGTGCATGTTTATCCAAAGAACAAGGATACCATTAATTGTGCTCTTAACAAGATGAGAAGCAGATGATGGACAAAGAGATAAGGACAAGGTCTTTATTCCCTAAAGACTGCAACTCTGCTACAGATACTATGCTCATGCTTCttaatgtgaatataaatgtaaaaatataaatgatgtaaGCATCTGAAGAGgcttttgacaaaatattttattagctgCAACTGGAAATGTTTTATAGTCTGTGTAATGTAAGTcactatattaaattaataaaagtttttcactATGGTTAA
>XM_043253221.1
acccagggcaccacttcttccgaagctactactattggcacctctactgtggaaagtacaaccttgggcaccacttcttccgacgCTATTACAGCTTTAGGTGAAACCACAAGGGCTCAAACTGACATTAGGCACCATTACTGTAGAGACTACAACACTTGGCAccatttctgcaaaacaaatcaaCGACGCTGGTTCCACTTTTGTAGAAAGTACTTCCCTGGTTACCACTTGTGCAGTACCCTTAGTAGTACATCTGTAGAAGCTAACAACTTGGACAATACTTCTCCAGAAACTACACTTGGAACCACTTCTGCACCATCAATTAGTTCAGGAGGAACTACAGCTTTAGGTGAAAGCACAATGGCTCAAACTGACATTAGGCACCATTACTGTAGAGACTACAACACTTGGCACCACttctgcaaaacaaatcaacaaCGCTGGTTCCACTTTTGTAGAAAGTACTTCCCTGGTTACCAATTGTGCAGTACCCTTAGTAGTACATCTGTAGAAGCTAACAACTTGGACAATACTTCTCCAGAAACTACACTTGGAACCACTTCTGCACCATCAATTAGTTCAGGAGGAACTACAGCTTTAGGTGAAAGCACAATGGCTCAAACTGACATTAGGCACCATTACTGTAGAGACTACAACACTTGGCACCACttctgcaaaacaaatcaacaaCGCTGGTCCCACTTTTGTAGAAAGTACTTCCCTGGTTACCACTTGTGCAGTACCCGTAGTAGTACATCTGTAGATGCTAACAACTTGGACAATACTTCTCCAGAAACTACACTTGGAACCACTTCTGCACCATTAGTTAGTTCAGGAGGAACTACAGCTTTAGGTGAAACCACAATGGCTCAAACTGACATTAGGCACCATTACTGTAGAGACTACAACACTTGGCACCACttctgcaaaacaaatcaaCGACGCTGGTCCCACTTTTGTAGAAGGTACTTCCCTGGTTACCACTTGTGCAGTACCCTTAGTAGTACATCTGTAGAAGCTAACAACTTGGACAATACCTCTCCAGAAACTACACTTGAAACCACTTCTGCACCATCAGTTAGTTTAGGAGGAACTACAGCTTTAGGTGAAACCACAATGGCTCAAACTGACATTAGGCACCATTACTGTAGAGACTACAACACTTGGCACCACttctgcaaaacaaatcaaCGACGCTGGTCCCAGTTTTGTAGAAAGTACTTCCCTGGTTACCACTTGTGCAGTACCCTTAGTAGTACATCTGTAGAAGCTAACAACTTGGACAATACTTCTCCAGAAACTACACTTGGAACCACTTCTGCACCATCAGTTAGTTTAGGAGGAACTACAGCTTTAGGTGAAACCACAATGGCTCAAACTGATATTAGGCACCATTACTGTAGAGACTACAACACTTGGCACCacttctgcaaaaaaaatcaacaacgCTGGTCCCACTTTTGTAGAAAGTACTTCCCTGGTTACCAATTGTGCAGTACCCTTAGTAGTACATCTGTAGAAGCTAACAACTTGGACAATACTTCTCCAGAAACTACACTTGGAACCACTTCTGCACCATCAGTTAGTTTAGGAGGAACTACAGCTTTAGGTGAAACCACAATGGCTCAAACTGATATTAGGCACCATTACTGTAGAGACTACAACACTTGGCACCACttctgcaaaacaaatcaacaaCGCTGGTCCCACTTTTGTAGAAAGTACTTCCCTGGTTACCACTTGTGCAGTACCCTTGGTACTATGTCTGTAGAAGCTACTAACTTGGATACTACTCAAGAAACTACACTTGGAACTACTTCTGCAATAACTGCAATGCTTGGCAGCACTTTTACTGAAACAATACCCTCAGTTAGTTCAAGAGGAGCTAAAGCTATAAGTACACCTCTCTTGCTGTTGTAACCCCAATGGCTCAAACTGCCATTAGGCACAATTACTGCAAAAACTACAATACTTGGTACCACttctgcaaaacaaatcaacaaCGCTGGTCCCACTTTTGTAGAAAGTACTTCCCTGGATACCACATGTGCAGTACCCTTAGTAGTACATCTGTAGAAGGTAGTAACGTGGATACTGCTCAAGAAACTACACTTGGAACCACTTCTGCAGTGATAATGCTTGATGGTACTTTTACTGAAGCACTCTCAGTTCTGTAGGTATACCTGTCTTAACGACTGCAGTTGAAACCAGAAGCTCAAACTTCCAGCAGGCACCCCTACGGTTGAAACTACTATTTGGGaccacttcttttaaaaaaaacacctccaCTTGTGCTCTATTTGTGCTCACTAGTACCTTCTTGAAACAACACCTACGTTCAACAGGAATAGTATTGGGATCATCAACTACACACATAACGGCAACCTTTGGAACAATTTGCTGTAGAAACCACAATGGCTTAGACTACCACTGCAGATGGAAAATTCTACCCTTGGTACCACTCCTGCAGAAATGGCACCCTTTTTTACTTCAGTAGCAATAGTAATGGAAACATTCACACCTGTAATAACTGCTAGAATGAAACTACAACCTGGAAATACTCTtggtttaaaatgttgaaaCCAAGATGGCTCTGAAAACTCTATGGAAACTTTCCCTGGGCATGACCTGGCCAGAAACTACTGCAATCTTGACATTCTCTTTGAAAAATGCACTTCTACATGAATCAGCTTTGCGGTTTGTGGTCGCAGTGGCCAATATGGAGGCTGCAGATTTAAAGAGATGCTGTGTGGTGTATGAACAGAACTGTTATTCAGTTGTGCATGTTTATCCAAAGAACAAGGATACCATTAATTGTGCTCTTAACAAGATGAGAAGCAGATGATGGACAAAGAGATAAGGACAAGGTCTTTATTCCCTAAAGACTGCAACTCTGCTACAGATACTATGCTCATGCTTCttaatgtgaatataaatgtaaaaatataaatgatgtaaGCATCTGAAGAGgcttttgacaaaatattttattagctgCAACTGGAAATGTTTTATAGTCTGTGTAATGTAAGTcactatattaaattaataaaagtttttcactATGGTTAA
>XM_043253222.1
acccagggcaccacttcttccgaagctactactattggcacctctactgtggaaagtacaaccttgggcaccacttcttccgacgCTATTACAGCTTTAGGTGAAACCACAAGGGCTCAAACTGACATTAGGCACCATTACTGTAGAGACTACAACACTTGGCAccatttctgcaaaacaaatcaaCGACGCTGGTTCCACTTTTGTAGAAAGTACTTCCCTGGTTACCACTTGTGCAGTACCCTTAGTAGTACATCTGTAGAAGCTAACAACTTGGACAATACTTCTCCAGAAACTACACTTGGAACCACTTCTGCACCATCAATTAGTTCAGGAGGAACTACAGCTTTAGGTGAAAGCACAATGGCTCAAACTGACATTAGGCACCATTACTGTAGAGACTACAACACTTGGCACCACttctgcaaaacaaatcaacaaCGCTGGTTCCACTTTTGTAGAAAGTACTTCCCTGGTTACCAATTGTGCAGTACCCTTAGTAGTACATCTGTAGAAGCTAACAACTTGGACAATACTTCTCCAGAAACTACACTTGGAACCACTTCTGCACCATCAATTAGTTCAGGAGGAACTACAGCTTTAGGTGAAAGCACAATGGCTCAAACTGACATTAGGCACCATTACTGTAGAGACTACAACACTTGGCACCACttctgcaaaacaaatcaacaaCGCTGGTCCCACTTTTGTAGAAAGTACTTCCCTGGTTACCACTTGTGCAGTACCCGTAGTAGTACATCTGTAGATGCTAACAACTTGGACAATACTTCTCCAGAAACTACACTTGGAACCACTTCTGCACCATTAGTTAGTTCAGGAGGAACTACAGCTTTAGGTGAAACCACAATGGCTCAAACTGACATTAGGCACCATTACTGTAGAGACTACAACACTTGGCACCACttctgcaaaacaaatcaaCGACGCTGGTCCCACTTTTGTAGAAGGTACTTCCCTGGTTACCACTTGTGCAGTACCCTTAGTAGTACATCTGTAGAAGCTAACAACTTGGACAATACCTCTCCAGAAACTACACTTGAAACCACTTCTGCACCATCAGTTAGTTTAGGAGGAACTACAGCTTTAGGTGAAACCACAATGGCTCAAACTGACATTAGGCACCATTACTGTAGAGACTACAACACTTGGCACCACttctgcaaaacaaatcaaCGACGCTGGTCCCAGTTTTGTAGAAAGTACTTCCCTGGTTACCACTTGTGCAGTACCCTTAGTAGTACATCTGTAGAAGCTAACAACTTGGACAATACTTCTCCAGAAACTACACTTGGAACCACTTCTGCACCATCAGTTAGTTTAGGAGGAACTACAGCTTTAGGTGAAACCACAATGGCTCAAACTGATATTAGGCACCATTACTGTAGAGACTACAACACTTGGCACCacttctgcaaaaaaaatcaacaacgCTGGTCCCACTTTTGTAGAAAGTACTTCCCTGGTTACCAATTGTGCAGTACCCTTAGTAGTACATCTGTAGAAGCTAACAACTTGGACAATACTTCTCCAGAAACTACACTTGGAACCACTTCTGCACCATCAGTTAGTTTAGGAGGAACTACAGCTTTAGGTGAAACCACAATGGCTCAAACTGATATTAGGCACCATTACTGTAGAGACTACAACACTTGGCACCACttctgcaaaacaaatcaacaaCGCTGGTCCCACTTTTGTAGAAAGTACTTCCCTGGTTACCACTTGTGCAGTACCCTTGGTACTATGTCTGTAGAAGCTACTAACTTGGATACTACTCAAGAAACTACACTTGGAACTACTTCTGCAATAACTGCAATGCTTGGCAGCACTTTTACTGAAACAATACCCTCAGTTAGTTCAAGAGGAGCTAAAGCTATAAGTACACCTCTCTTGCTGTTGTAACCCCAATGGCTCAAACTGCCATTAGGCACAATTACTGCAAAAACTACAATACTTGGTACCACttctgcaaaacaaatcaacaaCGCTGGTCCCACTTTTGTAGAAAGTACTTCCCTGGATACCACATGTGCAGTACCCTTAGTAGTACATCTGTAGAAGGTAGTAACGTGGATACTGCTCAAGAAACTACACTTGGAACCACTTCTGCAGTGATAATGCTTGATGGTACTTTTACTGAAGCACTCTCAGTTCTGTAGGTATACCTGTCTTAACGACTGCAGTTGAAACCAGAAGCTCAAACTTCCAGCAGGCACCCCTACGGTTGAAACTACTATTTGGGaccacttcttttaaaaaaaacacctccaCTTGTGCTCTATTTGTGCTCACTAGTACCTTCTTGAAACAACACCTACGTTCAACAGGAATAGTATTGGGATCATCAACTACACACATAACGGCAACCTTTGGAACAATTTGCTGTAGAAACCACAATGGCTTAGACTACCACTGCAGATGGAAAATTCTACCCTTGGTACCACTCCTGCAGAAATGGCACCCTTTTTTACTTCAGTAGCAATAGTAATGGAAACATTCACACCTGTAATAACTGCTAGAATGGTAATCTCAGCTATATTCCTGACTTCAATGTTTGCTGTGAAAATCAGTGTCTCAAACTACTATTTCTGCAGAAACTACAACCTGGAAATACTCTtggtttaaaatgttgaaaCCAAGATGGCTCTGAAAACTCTATGGAAACTTTCCCTGGGCATGACCTGGCCAGAAACTACTGCAATCTTGACATTCTCTTTGAAAAATGCACTTCTACAGTAGTGAATCAGCTTTGCGGTTTGTGGTCGCAGTGGCCAATATGGAGGCTGCAGATTTAAAGAGATGCTGTGTGGTGTATGAACAGAACTGTTATTCAGTTGTGCATGTTTATCCAAAGAACAAGGATACCATTAATTGTGCTCTTAACAAGATGAGAAGCAGATGATGGACAAAGAGATAAGGACAAGGTCTTTATTCCCTAAAGACTGCAACTCTGCTACAGATACTATGCTCATGCTTCttaatgtgaatataaatgtaaaaatataaatgatgtaaGCATCTGAAGAGgcttttgacaaaatattttattagctgCAACTGGAAATGTTTTATAGTCTGTGTAATGTAAGTcactatattaaattaataaaagtttttcactATGGTTAA

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0051225 spindle assembly biological_process
GO:0007049 cell cycle biological_process
GO:0007051 spindle organization biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0006259 DNA metabolic process biological_process
GO:0044427 obsolete chromosomal part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005694 chromosome cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component

KEGG:

id description
ko03030 DNA replication
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis
ko04914 Progesterone-mediated oocyte maturation

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253220.1 False 3146 mRNA 0.41 3 439870 444825
XM_043253221.1 False 3075 mRNA 0.41 4 439870 444825
XM_043253222.1 True 3150 mRNA 0.41 3 439870 444825

Neighbor

gene id symbol gene type direction distance location
mapta LOC107598589,LOC107732173,LOC107654024,LOC107664605 coding downstream 5594 407356 ~ 434276 (-)
brsk1a si:ch211-255p10.4,LOC107598587,LOC107732176,LOC108441159,LOC108273514,LOC107654020,LOC107557374,LOC103033508,LOC108427376,LOC107658484,LOC107548343 coding downstream 58703 363606 ~ 381167 (-)
irf3 NA coding downstream 100877 333577 ~ 338993 (-)
LOC122355359 LOC107654014,LOC107664598,LOC107557378,LOC107708888 coding downstream 121341 298608 ~ 318529 (-)
LOC122355360 LOC107598582,LOC107654016,LOC107732180,LOC107708889,LOC107664586 coding downstream 141756 292041 ~ 298114 (-)
LOC122355758 NA coding upstream 25018 469843 ~ 477539 (-)
rbp4 rbp4,LOC107743953,LOC107664626,LOC107598599,LOC107557363,LOC107653948 coding upstream 179086 623911 ~ 626522 (-)
fra10ac1 fra10ac1,LOC107664625,LOC107654038,LOC107708941,LOC107557362,LOC107743956 coding upstream 196046 640871 ~ 650188 (-)
noc3l noc3l,LOC107664623,LOC107654039,LOC107743960 coding upstream 291823 736648 ~ 745103 (-)
tbc1d12b LOC107743959,LOC107654040,LOC107708937,LOC107664632 coding upstream 301442 746267 ~ 762604 (-)
LOC122355423 NA non-coding downstream 53413 385889 ~ 386457 (-)
LOC122355197 NA non-coding downstream 54848 382572 ~ 385022 (-)
LOC122355220 LOC107561990,LOC107660458 non-coding downstream 241003 197400 ~ 198867 (-)
LOC122355221 LOC107561990,LOC107660458 non-coding downstream 242477 196901 ~ 197393 (-)
G84487 NA non-coding downstream 298789 140100 ~ 141081 (-)
G84547 NA non-coding upstream 33198 478023 ~ 478431 (-)
G84654 NA non-coding upstream 165242 610067 ~ 611847 (-)
G84666 slc35g1,si:ch211-197g18.2,LOC107598601,LOC107654036,LOC107664634,LOC107664593,LOC107557359,LOC107708939 non-coding upstream 215264 660089 ~ 663746 (-)
G84700 NA non-coding upstream 315100 759925 ~ 789003 (-)
LOC122355303 NA non-coding upstream 321829 766654 ~ 769898 (-)
prr12a prr12a,LOC107708947,LOC107664611,LOC107598586,LOC107654018,LOC107732166 other downstream 79388 340273 ~ 360482 (-)
G84521 NA other downstream 118610 319330 ~ 321260 (-)
LOC122355191 dusp3b,LOC107753093,LOC107590411,LOC107688089,LOC107709997 other downstream 268575 168048 ~ 171295 (-)
G84486 emsy,LOC107671635,LOC107690840,LOC107722098,LOC107565537,LOC107747365 other downstream 309885 78617 ~ 129985 (-)
LOC122355759 NA other upstream 39613 484438 ~ 490379 (-)
zgc:163073 LOC107653918,LOC107732170,LOC107708955,LOC107557349,LOC107664608,LOC107598675 other upstream 52139 496964 ~ 500219 (-)
ifnphi4 LOC107653919,LOC107732171,LOC107598640,LOC107664622,LOC107708945,LOC107557348 other upstream 98421 543246 ~ 552443 (-)
dlx4b dlx4b,LOC107739765,LOC107557342,LOC107708902 other upstream 444885 889710 ~ 897517 (-)
ank3b ank3b,LOC107654059,LOC107695539 other upstream 1369258 1814083 ~ 1947412 (-)

Expression


Co-expression Network