foxj1b (foxj1b,LOC107584215,LOC107734171,LOC107669185,LOC107692083,LOC107731389,LOC107554021)


Basic Information

Item Value
gene id foxj1b
gene name foxj1b,LOC107584215,LOC107734171,LOC107669185,LOC107692083,LOC107731389,LOC107554021
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8263110 ~ 8266628 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253226.1
CCTACATTTCATTTCTCTCGTGTTCTCTCGCCTGCGAAATAGTAAACGTGTTTCTACATGGCTTTCCCGAAGACGGGGTTGGAATGATACTTTCCCGCAGTAGATATCAGGACATGTTTGAGTTTGTGGATGCGCACGTTCATCTGCTGCACTTGTTGCACTGAGGCGCACCGGCTGCTCAATCTAACGGACCGACGGAAATTCACCGTTACCGACGAGGTCTTCGGCTTGTTTTCATTTCGCAGATCTGCATCTTCGAAAACACTAAATCGTGCCCACGATGCCAGTGTTAATGAGTCCAGAGATAGCGAATAAATTCAAAGAGAAATGGATGATGCTTCATCCGGAGGACCAGGACAATGTCAGCGGCTCTGTTCACTTTGACGACAGTCTCACCAGTCTGCACTGGCTACAGAACTTCTCCATCCTCAGTGCCAATCCGGAGCGGACTCCCAGCTCCGGCTGCCATCCGCAACACCTCTTCTACCACAAAAACCAGCTGGGGGGCACCGACTCGCCCTCCAGCCCACCTGCTGGAGATACCGCCGCCACAGGGATGCCACAAACACCTGGGAATCCCACAACGTCCTGCAGCAGCTTGGCGAATTCATACGGGCACCAGCAAGCGGGACACTACATAACGGCGCAAACAAATACGTCTGAGGAAATAGACTATAAAACAAACCGCCACGTGAAGCCACCCTATTCGTATGCCACCCTGATTTGCATGGCAATGCAAGCTAGCAACAAAACCAAAATCACTCTGTCGGCCATATACAGCTGGATCACGGAGAATTTCTGCTACTACAGATACGCGGAGCCAAGTTGGCAGAATTCAATCCGTCATAACTTGTCCCTGAACAAGTGCTTCATGAAAGTGCCCAGGCAGAAAGACGAGCCAGGAAAAGGAGGCTTTTGGCAGATCGACCCGCAGTACGCTGACATGTTTGTCAACGGCGTTTTCAAACGGCGGCGAATGCCTGCCACAAACTTCAATACCCAAAGACAGAGCAAAATGCTATCCTCTCCCAGCTCCTCGTACGGCTCTCAGTGCAACCAGGCCGTCCAACAAATGGGAACGGGCCACTTCCAAGGACCTGTCCCAGGAAACAAACGCAAGCAGGTTTTCCCCAAACGAGGCAGCAAGCTGGCCAGAGTCTCCAAGAGCCCTCTGTTAACCACCGACATCAAAACCTCAGACGTACTGAGGGGAGATTTCGACCTGGCGTCTGTTTTCGACGATGTGCTAAGCGGGAATGACAGCACGTTTGAGGATTTGGATATCAACACGGCGCTGAGCTCGCTGGGGTGCGAGATGGAGCTATCTTCACAGAACCAGCACGGGCCTGGATACAGCAATGAGGACGAACAGGCTTGCGCTTACCTAGAGGCGAACGGCATGATGGGATGCAACGTGGAGGACTTTCACCAACAGCATCACCAGCAAGTACAGGTCCATCCGCAATATTACGAGGGAATGTTCACAGATCAGGTTCACCAGCATCAGCACCCTTGGGAGATTAAAGAGGAAGCCCAAGCCATCCCACTCACCTTGGATCATGGCTATGGGCTTTGTGAGGGATTCTTCTCTGAGATGCAACTCTGGGAAAGAGCAGAGTCATATCTGTGAACGCGTCTCGATGCATATGCACCGTCTTTGCTCGTCTGAAGACCTACTGACTTTTGTTTTGCTACATTAGCATAATGAACTACCGAGGATGCGAGAGGTTATGTGTAATTATTCTTTGTActtcttttgcattttgtaaGAAGCTATACTGATTCATTTATAATCACTCTTGGTCTTTgaattcttgatttttttttttttttttgtctcgagATGGATAAATATTGTTGTGGGACAAGTGTAGTTATTTAGGGTTTTGTTCCTTATTGATTAATCAAtctaatatattcattttagtttacttGATATTTTAGGTAATGTCACGCTTTGTATaaatctaacaaaaataaaaagaaatacgaATCACATATTTGAGGGAAAAGGGATGCAACAAGCCAAAGTGCTTCACTAAATCATTTCCTGATTCAAAATAAGCCCGCACAAGCACTTTGAAGCTCAGTTTGTTGCCCAGTGATTTAGCCTCgtaatttattttctctcttttatgaTAATCCATGAGTGAGCAGCGTCCCACAAGTGCTCTCCTATACGtttcaaaatgtaatgcattagtCTTGGATTCACCATGAACTGTGGGTGGCAATCTTATGAGGCAATGACTGTTCTTGAAGTGTACTTGTATCGATTCTTTGAGAAATGGACTGAAACATgcaacatgaaacaaaatatattctgtacTTGAATAAAAAGATCAATCTGTACAACCTTT
>XM_043253227.1
GAGGGATTTCATTTGCCTATCCCTGTGGTGGATTACGCGCTTAGAAAATACACTTTTTGATGTTAAATTGTCATCAACCgttatttttgaaatttcaaGCAACGCCGTCTGCTTTACAGATCTGCATCTTCGAAAACACTAAATCGTGCCCACGATGCCAGTGTTAATGAGTCCAGAGATAGCGAATAAATTCAAAGAGAAATGGATGATGCTTCATCCGGAGGACCAGGACAATGTCAGCGGCTCTGTTCACTTTGACGACAGTCTCACCAGTCTGCACTGGCTACAGAACTTCTCCATCCTCAGTGCCAATCCGGAGCGGACTCCCAGCTCCGGCTGCCATCCGCAACACCTCTTCTACCACAAAAACCAGCTGGGGGGCACCGACTCGCCCTCCAGCCCACCTGCTGGAGATACCGCCGCCACAGGGATGCCACAAACACCTGGGAATCCCACAACGTCCTGCAGCAGCTTGGCGAATTCATACGGGCACCAGCAAGCGGGACACTACATAACGGCGCAAACAAATACGTCTGAGGAAATAGACTATAAAACAAACCGCCACGTGAAGCCACCCTATTCGTATGCCACCCTGATTTGCATGGCAATGCAAGCTAGCAACAAAACCAAAATCACTCTGTCGGCCATATACAGCTGGATCACGGAGAATTTCTGCTACTACAGATACGCGGAGCCAAGTTGGCAGAATTCAATCCGTCATAACTTGTCCCTGAACAAGTGCTTCATGAAAGTGCCCAGGCAGAAAGACGAGCCAGGAAAAGGAGGCTTTTGGCAGATCGACCCGCAGTACGCTGACATGTTTGTCAACGGCGTTTTCAAACGGCGGCGAATGCCTGCCACAAACTTCAATACCCAAAGACAGAGCAAAATGCTATCCTCTCCCAGCTCCTCGTACGGCTCTCAGTGCAACCAGGCCGTCCAACAAATGGGAACGGGCCACTTCCAAGGACCTGTCCCAGGAAACAAACGCAAGCAGGTTTTCCCCAAACGAGGCAGCAAGCTGGCCAGAGTCTCCAAGAGCCCTCTGTTAACCACCGACATCAAAACCTCAGACGTACTGAGGGGAGATTTCGACCTGGCGTCTGTTTTCGACGATGTGCTAAGCGGGAATGACAGCACGTTTGAGGATTTGGATATCAACACGGCGCTGAGCTCGCTGGGGTGCGAGATGGAGCTATCTTCACAGAACCAGCACGGGCCTGGATACAGCAATGAGGACGAACAGGCTTGCGCTTACCTAGAGGCGAACGGCATGATGGGATGCAACGTGGAGGACTTTCACCAACAGCATCACCAGCAAGTACAGGTCCATCCGCAATATTACGAGGGAATGTTCACAGATCAGGTTCACCAGCATCAGCACCCTTGGGAGATTAAAGAGGAAGCCCAAGCCATCCCACTCACCTTGGATCATGGCTATGGGCTTTGTGAGGGATTCTTCTCTGAGATGCAACTCTGGGAAAGAGCAGAGTCATATCTGTGAACGCGTCTCGATGCATATGCACCGTCTTTGCTCGTCTGAAGACCTACTGACTTTTGTTTTGCTACATTAGCATAATGAACTACCGAGGATGCGAGAGGTTATGTGTAATTATTCTTTGTActtcttttgcattttgtaaGAAGCTATACTGATTCATTTATAATCACTCTTGGTCTTTgaattcttgatttttttttttttttttgtctcgagATGGATAAATATTGTTGTGGGACAAGTGTAGTTATTTAGGGTTTTGTTCCTTATTGATTAATCAAtctaatatattcattttagtttacttGATATTTTAGGTAATGTCACGCTTTGTATaaatctaacaaaaataaaaagaaatacgaATCACATATTTGAGGGAAAAGGGATGCAACAAGCCAAAGTGCTTCACTAAATCATTTCCTGATTCAAAATAAGCCCGCACAAGCACTTTGAAGCTCAGTTTGTTGCCCAGTGATTTAGCCTCgtaatttattttctctcttttatgaTAATCCATGAGTGAGCAGCGTCCCACAAGTGCTCTCCTATACGtttcaaaatgtaatgcattagtCTTGGATTCACCATGAACTGTGGGTGGCAATCTTATGAGGCAATGACTGTTCTTGAAGTGTACTTGTATCGATTCTTTGAGAAATGGACTGAAACATgcaacatgaaacaaaatatattctgtacTTGAATAAAAAGATCAATCTGTACAACCTTT

Function

symbol description
foxj1b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within cilium assembly and embryonic organ morphogenesis. Predicted to be active in nucleus. Is expressed in several structures, including axis; germ ring; mesoderm; nervous system; and pronephros. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 43. Orthologous to human FOXJ1 (forkhead box J1).

NR:

description
PREDICTED: forkhead box protein J1.2-like

GO:

id name namespace
GO:0050869 negative regulation of B cell activation biological_process
GO:0060088 auditory receptor cell stereocilium organization biological_process
GO:0050900 leukocyte migration biological_process
GO:0042130 negative regulation of T cell proliferation biological_process
GO:0032088 negative regulation of NF-kappaB transcription factor activity biological_process
GO:0003146 heart jogging biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0060972 left/right pattern formation biological_process
GO:0002897 positive regulation of central B cell tolerance induction biological_process
GO:0035089 establishment of apical/basal cell polarity biological_process
GO:0002635 negative regulation of germinal center formation biological_process
GO:0002924 negative regulation of humoral immune response mediated by circulating immunoglobulin biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0030324 lung development biological_process
GO:0001947 heart looping biological_process
GO:0033085 negative regulation of T cell differentiation in thymus biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG:

id description
K24664 FKH; forkhead protein FKH

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253226.1 True 2360 mRNA 0.46 3 8263110 8266628
XM_043253227.1 False 2234 mRNA 0.46 2 8263110 8266368

Neighbor

gene id symbol gene type direction distance location
zgc:163057 zgc:163057,LOC107584216,LOC107734190,LOC107692104,LOC107669180,LOC107594186 coding downstream 57390 8203574 ~ 8205720 (-)
hbae5 LOC107734189,LOC107594227,LOC107692106,LOC107674601,LOC107596827 coding downstream 67894 8194223 ~ 8195216 (-)
arhgap17a arhgap17a,arhgap17,LOC107594184,LOC107731407,LOC107669196,LOC107584117,LOC107699879,LOC107734204 coding downstream 84003 8155233 ~ 8179107 (-)
zdhhc4 zdhhc4,LOC107734165,LOC107669203,LOC107584218,LOC107594224,LOC107699875,LOC107731390 coding downstream 134091 8126083 ~ 8129019 (-)
LOC122355067 pgp,LOC107584220,LOC107669208,LOC107734160,LOC107731387,LOC107594223,LOC107699876 coding downstream 141020 8120334 ~ 8122090 (-)
mgrn1a mgrn1a,LOC107734214,LOC107669220,LOC107584113,LOC107554032 coding upstream 1146 8267774 ~ 8278165 (-)
mrtfba LOC107734216,LOC107669223,LOC107584111,LOC107692080,LOC107554034 coding upstream 37139 8303767 ~ 8325041 (-)
ercc4 ercc4,LOC107734247,LOC107669240,LOC107692079 coding upstream 58615 8325243 ~ 8331539 (-)
snx29 snx29,LOC107584181,LOC107734208,LOC107690065 coding upstream 150604 8417232 ~ 8511214 (-)
LOC122355801 LOC107584107,LOC107734172,LOC107690070,LOC107731391,LOC107554041 coding upstream 248085 8514713 ~ 8515183 (-)
G86553 NA non-coding downstream 63986 8198918 ~ 8199124 (-)
G86505 LOC107692108,LOC107584217,LOC107734162,LOC107669195,LOC107731388 non-coding downstream 72825 8187641 ~ 8190285 (-)
G86513 NA non-coding downstream 108937 8148747 ~ 8154173 (-)
G86516 NA non-coding downstream 150397 8111193 ~ 8112713 (-)
G86458 NA non-coding downstream 208079 8054768 ~ 8055031 (-)
G86576 NA non-coding upstream 23452 8290080 ~ 8290410 (-)
G86606 NA non-coding upstream 72828 8339456 ~ 8339815 (-)
G86608 NA non-coding upstream 77708 8344336 ~ 8344609 (-)
G86775 NA non-coding upstream 269345 8535973 ~ 8538206 (-)
G86798 NA non-coding upstream 330766 8597394 ~ 8628972 (-)
G86203 NA other downstream 874200 7388236 ~ 7388910 (-)
G86108 NA other downstream 1158892 7103880 ~ 7104218 (-)
G86049 LOC101886504,LOC101886427 other downstream 1591863 6670319 ~ 6671247 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other downstream 2185042 6051168 ~ 6078068 (-)
G85930 LOC107711793,LOC107755027 other downstream 2250999 5990913 ~ 6012111 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other upstream 67776 8334404 ~ 8359992 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other upstream 244775 8511403 ~ 8513265 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other upstream 343924 8610552 ~ 8612445 (-)
plbd1b LOC107578697 other upstream 415815 8682443 ~ 8687548 (-)
trnar-ccu_66 NA other upstream 420870 8687498 ~ 8687570 (-)

Expression


Co-expression Network