trub1 (trub1,LOC107755443,LOC107689966,LOC107702428,LOC107708440)


Basic Information

Item Value
gene id trub1
gene name trub1,LOC107755443,LOC107689966,LOC107702428,LOC107708440
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 13199764 ~ 13202870 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253229.1
TGAATGACGTCATCATCGCGCGCCGACAGCAACAAGCATGGCTGTACAGAGCAGTTCGCTATCCAAATTGCAGTCTTTAAATGGCATATTTGCCATTTATAAGAAGCAGGGTCCCACCTCCGCGGACGTGTTAAACTCACTGAAGAAGGTGCTTTTAAAAGAGGCAGGTGTCGCAAATCCCAATCCTCGCAAAAGGAAGAATCAACCTTTAAAAATTGGCCATGGTGGCACCCTGGACAGCAATGCTTCTGGTGTACTTGTGGTTGGAATTGGTGAAGGAACAAAGATGCTTACCACGATGCTTGCAGGATCAAAGAAATACAGAGCCGTTGGAGAGTTAGGCAAAGCAACTGATACGCTTGACGTCACAGGAAATGTTGTCGAAGAGAAAAGTTATGATCACATCACAAAAGATGCTTTTGAAGAGAAGCTGAAGCAGTTTACTGGTGAAATTATGCAGGTTCCGCCTCTATATTCAGCACTGAAGAAGGACGGCCAGCGCATGTCTGTACTGCTCAAGCAAGGTCAAGAGGTTGAGGCTAAACCTGCACGTCTAGTCACAGTGTACAGTCTGACTTTACAGGACTTCAGCCCGCCATATTTCACCTTAGATGTTGAGTGTGGAGGTGGGTTTTATGTCAGAAGCTTGGTTGATGATCTTGCAAAAGCTCTGTCATCCTGTGCTCACATCAAGGACCTCACTCGGACCAAGCAGGGGCAGTTCACCCTGGACGAGCACACATTGAAGGAGGATCGCTGGACGTGGACCGATATTTCACAGGCTCTGCAGCCCTGCCCAGAGCCATCGGGGCAGCAAAAGAATGCCAAAAAAGCTAAATCAAAGCATAAGTCCATTGCATCTAAATCTGAGGTTGACAATGGAGATCAAAACGATTAAAGGTGATAAAACAACTTACAAATCATATTTGCAGTGAGAGAACTGTTGGAAATTGCTTGGTCCACTCCGATTTAATCTGGCCTTTACCATCCGTGTGTATTCATCTTCATGGCCATGAGGATAAAACAGGTGGCATCAATTGAATTAATGCATCTGAATTcacttaatgaaaaaaaaaaatacttgaaaagttattttgtttgttaataaataCCTATGTAATTAAATTTCTTTTCTCCAGGTCAGTAAATGTTCTTGTCATTTACGTGTTGTTTTCATGTTAGGTAAGAACCATAACGTTTTGTAATAGAAGCAATACATAACAAAAGAGTAATGCAGTACTCATGTATTGGAAAATAGCAATAAATTGCACTGTTGTTTTA

Function

symbol description
trub1 Predicted to enable pseudouridine synthase activity. Predicted to be involved in mRNA pseudouridine synthesis and tRNA modification. Predicted to act upstream of or within RNA processing and pseudouridine synthesis. Predicted to be active in mitochondrion. Orthologous to human TRUB1 (TruB pseudouridine synthase family member 1).

NR:

description
probable tRNA pseudouridine synthase 1

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0001522 pseudouridine synthesis biological_process
GO:0003723 RNA binding molecular_function
GO:0009982 pseudouridine synthase activity molecular_function

KEGG:

id description
K03177 truB, PUS4, TRUB1; tRNA pseudouridine55 synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253229.1 True 1281 mRNA 0.42 8 13199764 13202870

Neighbor

gene id symbol gene type direction distance location
atrnl1b atrnl1b,atrnl1,LOC107755548,LOC107689951,LOC107708169,LOC107702414 coding downstream 2679 13113810 ~ 13197085 (-)
nrg3b nrg3b,LOC107678479,LOC107566665,LOC107689960,LOC107563798,LOC107754077 coding downstream 180061 12900935 ~ 13019703 (-)
sh2d4bb LOC107754115,LOC107565991,LOC107675008,LOC107689965,LOC108273974,LOC107722446 coding downstream 313600 12879600 ~ 12886164 (-)
si:ch211-214e3.5 LOC107754079,LOC107565766,LOC107675030,LOC107722448,LOC107689947,LOC107563792 coding downstream 344469 12846514 ~ 12855295 (-)
cd37 NA coding downstream 440843 12752719 ~ 12758921 (-)
LOC122355472 NA coding upstream 90866 13293736 ~ 13296254 (-)
vwa2 vwa2,LOC107755546,LOC107702446,LOC107707947 coding upstream 104751 13307621 ~ 13324695 (-)
tdrd1 LOC107702448,LOC107755540,LOC107566104,LOC107581549,LOC107708149,LOC107689961 coding upstream 122283 13325153 ~ 13334792 (-)
adrb1 adrb1,LOC107755541,LOC107566002,LOC107702449,LOC107689959,LOC107581665 coding upstream 169619 13372489 ~ 13375488 (-)
nhlrc2 nhlrc2,LOC107755539,LOC107708141,LOC107702418,LOC107684116 coding upstream 178774 13381644 ~ 13398387 (-)
G87860 gabrz,LOC108273489,LOC107675029,LOC107754081,LOC107565977 non-coding downstream 392118 12804696 ~ 12807646 (-)
LOC122355629 NA non-coding downstream 561028 12613150 ~ 12638736 (-)
G87746 NA non-coding downstream 712369 12438750 ~ 12487395 (-)
G87695 LOC107669482,LOC107552775 non-coding downstream 852698 12344898 ~ 12347066 (-)
G87660 NA non-coding downstream 1047027 12152240 ~ 12152737 (-)
G88003 NA non-coding upstream 163083 13365953 ~ 13368320 (-)
G88019 NA non-coding upstream 231024 13433894 ~ 13434125 (-)
G88034 nrap,LOC107755535,LOC107702452 non-coding upstream 255586 13458456 ~ 13459865 (-)
G88035 nrap,LOC107702452,LOC107755535 non-coding upstream 257275 13460145 ~ 13461245 (-)
LOC122355666 NA non-coding upstream 506185 13709055 ~ 13712541 (-)
G87845 LOC107675011 other downstream 447086 12751904 ~ 12752678 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other downstream 524292 12649383 ~ 12675472 (-)
G87608 NA other downstream 1248609 11948540 ~ 11951155 (-)
G87569 NA other downstream 1364152 11832879 ~ 11835612 (-)
G87489 NA other downstream 1877161 11321423 ~ 11322603 (-)
LOC122355808 LOC107684141,LOC107702421,LOC107581556,LOC107684142,LOC107708119,LOC107708127 other upstream 221438 13424308 ~ 13432195 (-)
entpd1 LOC107707825,LOC107755533,LOC107581561,LOC107702455,LOC107684037,LOC107566185 other upstream 320798 13523668 ~ 13540301 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107702422,LOC107750316,LOC107566231,LOC106949585,LOC106589326 other upstream 406550 13609420 ~ 13691340 (-)
srsf2a srsf2,LOC107702465,LOC107566380,LOC107684046 other upstream 770012 13972882 ~ 13976511 (-)
G88250 LOC107702476 other upstream 945177 14148047 ~ 14150005 (-)

Expression


Co-expression Network