six2b (LOC107749381,LOC107550038,LOC107698797,LOC107582772,LOC107700111,LOC107739330)


Basic Information

Item Value
gene id six2b
gene name LOC107749381,LOC107550038,LOC107698797,LOC107582772,LOC107700111,LOC107739330
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11217292 ~ 11219552 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253246.1
TCCCCAGGAGGATGCGCTGGGCGTCCGTACACACCAGGCACTCTGTAAGAGATATGATAAACAGAGGGCGGGCTGATAGCTAAGGACAGTCTAGGAAAGAATCTATTGCGCGCGACGAGAGCGCGTAAGAATGAAATGATTAGCGCGTCACGATATTGCGGCTAAGTGATTGAGCGATGCAGGACACTGACTCAAACTGTTAGCTTTGCGTTTGTTTTGCTTTGGAccgttttttaaaatcttttcatGGAAAATGCACGCCAAGAACTGAATTTGTTCAGTTGGGGGAGCCTCGTTGCTTGAGTTTCCAAAGTGGATATCGCATTAAAAACCAACGTTTAGACGCGCGCGCGCGGGAGACCGGGTGTCCTATTGCCTTGAACTATGTCTATGCCACCAACTTTTGGATTTACCCAGGAGCAGGTTGCCTGCGTCTGCGAGGTCCTTCAGCAAGGTGGGAGTATCGAACGTCTCGGGCGCTTTCTGTGGTCCTTACCTGCCTGCGAGCACCTCCACAAAAACGAGAGCGTATTGAAAGCGAAAGCCGTGGTGGCTTTCCACCGCGGCAACTTCAGGGAGCTCTACAAAGTATTAGAGAGCCACCAGTTCTCTCCGCACAACCACCCTAAACTGCAACAGCTCTGGCTCAAAGCTCACTACGTCGAAGCGGAGAAATTACGCGGTCGTCCTCTGGGCGCAGTAGGAAAGTACCGCGTACGCAGAAAGTTTCCGCTGCCTCGCACCATTTGGGATGGAGAGGAGACCAGCTACTGTTTTAAGGAGAAGAGCCGGTGTGTGCTTAAAGAGTGGTACACGCACAACCCGTACCCTTCTCCGAGGGAGAAGAGAGAACTGGCCGAGGCCACGGGCCTCACCACGACGCAGGTCAGCAACTGGTTCAAGAACAGGAGGCAGAGGGACCGCGCAGCAGAAGCAAAGGAAAGGGAAAACGATGGCGCAAATCCAAACGGCCACAACCCGCTGACCTCTCACGTGAACGAAAACAAATCTCTGTGCGAGAGTTCAGAGGACGACAAATCCCCCGCGGCGACCCCGGATCACAGCTCCATGAGCCCAGCCATCCTCCTGCCCTCCAGCTCCGGCCTGCCTCCCCTGCACAGCTTCGCGCCTCCGCCCGGCCCCAGCGCCTCCATCCTCCCGGTCAGCGGCCCGGACGTTCAGAGCCACCACCACTTCTCCATGCACGACGGCCTCCTCAACTCCATGACGGCCAGCCTGGTCGAACTCGGATCATAAGAAATAAAACTCAGCATCTTTGACTCCCCCCCCACTCCCAGTTACTAGCTTCGTTATCATAGGCtaccaaacattttattaggCAAGCTTAGAGGacattagacaaaaaaaaaataaaaatccaagaACTAGCCTACCAGATGGCGGGCCTACGTGAAAACCGTTTCCATAAGAATCCTGTAACAAATCGATGTAATCAAGGGATAGTTTTTGATATGTCTAGCTataaaatgaactaataaaatatatatttaataacgtC

Function

NR:

description
PREDICTED: homeobox protein SIX2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048793 pronephros development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K15614 SIX1; homeobox protein SIX1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253246.1 True 1519 mRNA 0.52 2 11217292 11219552

Neighbor

gene id symbol gene type direction distance location
zfp36l2 zfp36l2,LOC107698819,LOC107749349,LOC107700120,LOC107550050,LOC107728722,LOC107582775 coding downstream 94454 11119418 ~ 11122838 (-)
hcar1-4 LOC107749353,LOC107698821,LOC107550036,LOC107700109,LOC107582776,LOC107728709 coding downstream 133256 11082205 ~ 11084036 (-)
kcng3 kcng3,LOC107749354,LOC107728707,LOC108273984,LOC107698800,LOC108430560 coding downstream 162486 11049679 ~ 11054806 (-)
rhoq rhoq,LOC107550049,LOC107582780 coding downstream 189862 11012472 ~ 11027430 (-)
socs5a LOC107582782,LOC107728716,LOC107698827,LOC107673648,LOC107550046,LOC107749358,LOC107550045 coding downstream 220711 10985042 ~ 10996581 (-)
sncgb LOC108430421,LOC107550059,LOC107700127 coding upstream 104849 11324401 ~ 11331793 (-)
bmpr1ab bmpr1a,bmpr1ab,LOC107749344,LOC107698810,LOC107550060,LOC107739296,LOC107582766,LOC108274296 coding upstream 124907 11344459 ~ 11374806 (-)
ldb3b ldb3b,ldb3,LOC107749342,LOC107552745,LOC107739309,LOC108274368,LOC107698793 coding upstream 156243 11375795 ~ 11392390 (-)
opn4b opn4b,LOC107552747,LOC107739286,LOC107582762 coding upstream 174705 11394257 ~ 11420206 (-)
usp54b LOC107698809,LOC107706875,LOC107720824,LOC107582762 coding upstream 221217 11440769 ~ 11528254 (-)
G87449 NA non-coding downstream 52253 11108896 ~ 11165039 (-)
G87450 NA non-coding downstream 91013 11124447 ~ 11126279 (-)
G87429 mta3,LOC107749351,LOC105904126 non-coding downstream 145527 11071249 ~ 11071765 (-)
G87406 fshr,LOC107728706,LOC107582855,LOC107673646 non-coding downstream 321145 10895841 ~ 10896147 (-)
LOC122355137 NA non-coding downstream 322575 10868848 ~ 10894717 (-)
G87409 NA non-coding upstream 39465 11259017 ~ 11298534 (-)
G87482 NA non-coding upstream 52189 11271741 ~ 11273302 (-)
G87484 NA non-coding upstream 58772 11278324 ~ 11283586 (-)
G87417 NA non-coding upstream 92920 11312472 ~ 11315998 (-)
G87414 glud1b,LOC107700126,LOC107739271,LOC107582816 non-coding upstream 96831 11316383 ~ 11318921 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other downstream 171403 11042888 ~ 11045889 (-)
cript cript,LOC107582781,LOC107728714 other downstream 210338 11005006 ~ 11006954 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other downstream 1277443 9311653 ~ 9939849 (-)
ormdl3 ormdl3,LOC107723636,LOC107657273,LOC107556587,LOC108273759,LOC102217224,LOC106521946,LOC102783025,LOC105936292,LOC107092838 other downstream 1727980 9481559 ~ 9489312 (-)
LOC122355288 LOC107660874 other downstream 2339161 8875617 ~ 8878131 (-)
G87489 NA other upstream 101871 11321423 ~ 11322603 (-)
G87569 NA other upstream 613327 11832879 ~ 11835612 (-)
G87608 NA other upstream 728988 11948540 ~ 11951155 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other upstream 1429831 12649383 ~ 12675472 (-)
G87845 LOC107675011 other upstream 1532352 12751904 ~ 12752678 (-)

Expression


Co-expression Network