gch2 (gch2,LOC107550032,LOC108429343,LOC105896951,LOC105006138)


Basic Information

Item Value
gene id gch2
gene name gch2,LOC107550032,LOC108429343,LOC105896951,LOC105006138
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11000854 ~ 11004942 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253253.1
ATATAAAAGACATAAGCTCAGCACATGCATAAATGAGAAGTCATATGCAGTGGTTATATGTATAGGCTACACCtttcaaataaacagaattcttcgctttttatttcacaaaaacaacactgataaCAACATTGAGTTTAGTTACTAcgctattattattgttattattattataaggctttgatttaaaattttaaaagaatctaAAGTGTCTTAATACAGCTTATGGGGGTCAAGCTTATGTGTGAGCACGTGAGGTCATATGCTCAGAAGTTTGACGCTCATTTATGCCTTTACATTAAGACTAGCAAATCACGAATCAGTTTTGCATGACTGTAACGCATTATTCAATTACACCGCATAAAAAGGGTGTGACATGTGTAAGACACAATAGAGCGCGTGCTCACACTAAATACCGACGTGTTCAATTGGACACAGTGATAGCGGAGGGCTCCTATAAATGCCACGCAGAGTTGGAGAGAAGTACACTGCAGCTGAACCTCAACTCCGAAGCACCACGGCGATCAATAGCCTACCTGGCAACCGGCTGCAGTCGTGAAATAATATAGACTAAATCCGTTTGGTTAACGACCGTACGTTTTAAATAAACGACAATAATATCTTATTCTCTTTTAATTAGCCATTTAAGGTACATTCGATGGAATACCAAAAGGCGGCAGAATTGAACGGTTTGTGCAATGGCAAAATTGTCACAGAGTATCTCTGCCGTAACGGCTTTAGCGAGCTGACGGTCGACTCGAAAAAAGTCGCTGTCCAGCACAAGAACGAGACGTCCCGGAAAGAGGCGGAGGACGAGTCGCGGTTACCTGCTCTGGAGGCGGCGTACACAACCATCCTGCGAGGTCTGGGAGAAAACACCGACCGGCAGGGGCTCCTCAAAACACCGCTCCGCGCAGCGAAGGCCATGCAGTTCCTGACCAAGGGCTACCACGAGACCATTTACGATGTCCTCAATGACGCCATCTTTGATGAAGACCACGAGGAGCTAGTTATTGTGAAAGATATTGACATGTTTTCACTTTGCGAACATCATCTAGTACCATTTTTTGGGAAGGTTCACATAGGATATCTCCCAAGTAAAAAGGTTGTTGGCCTCAGTAAGCTTGCGAGGATTGTTGAAATCTACAGTCGCAGACTCCAAGTCCAAGAGCGCCTAACAAAGCAAATAGCAATGGCGATCTCTGAAGCCCTGCAGCCTGTCGGAGTGGCAGTTGTCATCGAGGCAGCtcACATGTGCATGGTCATGCGCGGAGTGCAGAAGATGAACAGTCGTACTGTGACCAGCGCCATGCTGGGTGTGTTCAGAGAGGATCCAAAAGCTCGAGAGGAGTTCCTGGCCTTGACCAAAGGCGCATAGTGACCACGCTTCCTTCCCCGCTCCGACTGCATCAGTGTGTTTACAGCCAAACAGGTCAATGAATATTCTCTACATTTAAAACCCTCCATGGTGCTAAGAGAATCTCACTGAGCCAGAGCTGTAAGATCCTTCCACCAGCTACTGAGACTCAGGGGTCTTAGAGAAAATGTGAATAGTGAAAGATCAGTGTTACATGTACTACTGGTTTTGTGAATCTAACACTGAATGGCCAAAAATTCACACAGCTgccttaaatatatttctattattttactACTGTTATTAACAATTACTAAATTAACATATTGCCTTATATACTTGTCTAATCTTATgactttttacaaaatgaagATACTAGAactaatttgtatataaatttaaaagaaatgcattttgcatcATATCTCTCTGACTGATAATATTTAAGCTGTCGTAAGTAAACACGATGATTAATTTATAGTTATACAAGTCAATGAAATGTTTCTGGTggcataatttataaatgtttagaaataaacaacattGCCATTAGGatattgtcactttttttttttaaccaaattgtatgagaaatcaaaacaaatgtcaACTGTGccaaatgaaacaata

Function

symbol description
gch2 Predicted to enable GTP binding activity; GTP cyclohydrolase I activity; and zinc ion binding activity. Acts upstream of or within xanthophore differentiation. Predicted to be active in cytoplasm. Is expressed in head; neural crest; pigment cell; trunk; and xanthoblast. Human ortholog(s) of this gene implicated in BH4-deficient hyperphenylalaninemia B; bipolar disorder; dystonia; and dystonia 5. Orthologous to human GCH1 (GTP cyclohydrolase 1).

NR:

description
PREDICTED: GTP cyclohydrolase 1-like

GO:

id name namespace
GO:0046654 tetrahydrofolate biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0003934 GTP cyclohydrolase I activity molecular_function

KEGG:

id description
K01495 GCH1, folE; GTP cyclohydrolase IA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253253.1 True 1987 mRNA 0.41 6 11000854 11004942

Neighbor

gene id symbol gene type direction distance location
calm2b calm1,LOC105896953,LOC107670363,LOC102778633,LOC102293206 coding upstream 51813 10944753 ~ 10949041 (+)
fshr fshr,LOC107582855,LOC107673646,LOC107728706 coding upstream 103574 10888133 ~ 10897280 (+)
nrxn1a nrxn1a,LOC107673642,LOC107582788,LOC107749365 coding upstream 136409 10707898 ~ 10864445 (+)
asb3 asb3,LOC107738981,LOC107549406,LOC107657482,LOC107749367,LOC107686373 coding upstream 380368 10614193 ~ 10620486 (+)
psme4b psme4b,LOC107749369,LOC107584369,LOC107686372,LOC107657478,LOC108426507 coding upstream 391704 10585082 ~ 10609150 (+)
pigf pigf,LOC107698824,LOC107550047,LOC107749355,LOC107582779,LOC107728710,LOC107700117 coding downstream 2022 11006964 ~ 11013659 (+)
mta3 LOC107698822,LOC107582777,LOC107728718,LOC107700107,LOC108430512 coding downstream 50752 11055694 ~ 11082276 (+)
ppm1bb ppm1bb,LOC107582773,LOC107698817,LOC107749348,LOC107550052,LOC107700122,LOC108430462,LOC108273990,LOC107739221 coding downstream 136682 11141624 ~ 11165042 (+)
six3b six3b,LOC107550037,LOC107698799,LOC107582771,LOC107739239,LOC107749382,LOC107700110 coding downstream 205309 11210251 ~ 11212765 (+)
prkcea prkcea,LOC107550054,LOC107698816,LOC107739250,LOC108274197,LOC108430457 coding downstream 225245 11230187 ~ 11277491 (+)
G87210 NA non-coding upstream 3860 10996730 ~ 10996994 (+)
G87207 LOC107582782,LOC107698827,LOC107728716,LOC107550046,LOC107673648,LOC107550045 non-coding upstream 13144 10981278 ~ 10987710 (+)
LOC122355200 NA non-coding upstream 45059 10954658 ~ 10955795 (+)
LOC122355308 NA non-coding upstream 61025 10916186 ~ 10939829 (+)
G87181 NA non-coding upstream 111229 10889418 ~ 10889625 (+)
G87222 NA non-coding downstream 35726 11040668 ~ 11040906 (+)
G87220 LOC107749353,LOC107550036,LOC107698821,LOC107700109,LOC107728709,LOC107582776 non-coding downstream 77258 11082200 ~ 11089057 (+)
LOC122355479 NA non-coding downstream 78456 11083398 ~ 11089158 (+)
trnai-uau_3 NA non-coding downstream 79335 11084277 ~ 11084370 (+)
LOC122355611 NA non-coding downstream 117981 11122923 ~ 11130890 (+)
svila LOC107686370,LOC107657481,LOC107584371,LOC107749370,LOC107549408 other upstream 418309 10523143 ~ 10582545 (+)
LOC122355633 rhoq other upstream 501156 10497425 ~ 10499698 (+)
LOC122355192 opn4b,LOC107552747,LOC107739286,LOC107568552,LOC107582762,LOC107700131 other upstream 504577 10481492 ~ 10496277 (+)
LOC122355255 NA other upstream 1101853 9883033 ~ 9899001 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other upstream 1126339 9864814 ~ 9874515 (+)
G87315 zeb1b,LOC107666916,LOC107706887,LOC107727309,LOC107582755,LOC107552760,LOC107669492 other downstream 689902 11694844 ~ 11701655 (+)
hoxb6b hoxb6b,LOC107669478,LOC107706870,LOC107582852,LOC107552740,LOC107666911,LOC107727299 other downstream 877209 11882151 ~ 11884097 (+)
nbr1a nbr1,LOC107669491,LOC107706899,LOC107582742,LOC107727312,LOC107666919 other downstream 931899 11936841 ~ 11945635 (+)
G87817 NA other downstream 1727822 12732764 ~ 12737649 (+)
gall si:rp71-1c10.8,LOC107677873,LOC107743798,LOC107675007,LOC107566084,LOC107754084,LOC107563807 other downstream 1755432 12760374 ~ 12762731 (+)

Expression


Co-expression Network