foxh1 (LOC107716461,LOC107551840,LOC107556762,LOC107727966,LOC107653269)


Basic Information

Item Value
gene id foxh1
gene name LOC107716461,LOC107551840,LOC107556762,LOC107727966,LOC107653269
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5535173 ~ 5540436 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253256.1
TATCATTACGCAAATGAGTTGCAGATTCTCACACAATCAGAGACCGGCGCGTGAAAGTACCGCAGAGTTGACCTGGAGCCAGCAGTCTGAGGGGTTGAGGAGCGACCATCCCTGCCTCCTCCCCCTCTACATCAGCATGACAAAGCACTGGGGGGGTCCGGGCTTGTTGGCACCACCCGCGAACACTGTAGGAGCAGGAGCCCAACACGACCATCACCTTGACTGCAGAACCAGCTATTCCTCTTCCAACACCAGCTGTCACTGCTCCACAAACGCACTGTTGGAGTTCGGTGGCCGGCTGAGTACGTCCACAGGGATGGCGCAGGACTCCTGTTACAGAGCCAAACCGTCGGATCAGAACGCATGGGAAATGCAGGATGGAAACTCCAGCGGAGGAAAGAAGAAGAACTATCAGCGTTATCCCAAACCACCTTACTCGTACCTAGCTATGATTGCCATGGTCATCCAGAACTCTCCGGAGAAGAAACTCACTTTGTCAGAGATTCTGAAGGAGATCAGCACTCTCTTTCCATTCTTCAAGGGAAATTACAAAGGCTGGAGGGACTCAGTCCGACACAACCTGTCTTCTTACGACTGTTTCGTGaagGTGCTTAAGGATCCTGGTAAACCCCAAGGTAAAGGTAACTTTTGGACTGTAGAAGTGAGCCGAATTCCTCTGGAGCTCCTAAAAAGGCAAAATACGGCAGTATCTCGTCAGGATGAAACTATCTTTGCTCAGGACCTTGCCCCGTACATCTTTCAAGGTTACGCTCAGCCGAACAAATCCAAAACTCTGCCCACTGACCTGTCCTTACCCCCTGTTCCCACCCGTCACAGCCCACCCCCATCAGAGGACCCCTATCGTCCCAAACTGGACTCCACATTTGCTATAGATTCTCTCCTGCATAGCCTCAGGCCTGCCAGTTCTGCTGGGGAAGGGctgcgagagagagaaagttggGGCATCGGGCCTCCTCCGCACACTCGCTCTACCACTCCACCACGTCCTTGTAATGGCTCGTATAATTGCAGTTCGTCAACCAGCTCCGTCAGTCCTGCGTCGGATTTGTCAGACGAGGAATGGAGAGGGGTGACACTCGTTGGGAAAAGATTAGGTGATCGAGGATCAACTTCAGACGGATACAGTGACTCCTGCCCCCCACCAAACAAAAGTTCAAAACGCAACACCACACCTCCATGGGAGCTGCCGACTTCCTACGCCAAGTATACCCCTCCCAACGCAGTAGCCCCTCCTAGCATGCGCTTTAATGGAAACCCGTTCATGCCACTAGGCGGTATTCCGTTCTACGGTTATGGTGGTGCACATGTCACTTCATCACACTTGATTGGTCACCCTTACTGGCCCATCCTACCAAGTGGGCCAGTTTCCATACAAGCCCCGCCCCTACTCATGGACTTGGACAGTATGCTGCAATCTGTTCCACCCAATAAGAGCGTGTTTGATGCGCTTGGCCCCAACAATCAGACTGCTCATCCACCTCCAAACCAGTATGCCCTTCAAAACGGGCCTTCCCTTTGCAAATACTCTCTTTAAACTATGCACAAAATAGTCCTAGAAGAACACGGCTTCTCATCTTTGGCACTGCTCAGGTTTACACAAATATTTGCAACCGCTAATGCTGCTCATTACTGTATACTCAGTCTGTGAATTGTCTCAGGGAATTCCTTGAGAGAATCTCTCTGTGAACTGAACAGTTACAGGGCTAATATTGACCAAAGAATCTACCCAACTAATGTTGACACTGTTGTAACTTCTGTCTATTCATGTGACTTTCTTTGACACGATTACTACCTCAGACTTTTAATGTCAATGGGGAGGCACATTGGCTGCTCTTGTTTCCTGAATGGACCCTTTTAATGTTTGGGGACAATCAATGAAATTCTTGACAAGACCAATTGAATGTTGACCATTTATAAGCTTGAAatatggtgtgtgtgagtgttgttGCTTTACCGCCTTACAAATCAACCAGAAATGGTGTGCTGGTCATTTGTTAAGATTAGggatgtgtttgtgtaaatgtgtacTTTTGAAACTGTTAGGAACCTGCAAAGTTTACATAAAGACAGGCTTTTAAGCCACGAACGTGTCACTTTTTATATGTTGGTTTTAGCAGggtaaacagattttttttttttttgttgaaatcttGACTTTTTGTATGGCTTTTCTGACATGATTATGTGttcttaaaacaatttaatttcacCCCCACTCACTTGGTAAAGTCCAATCTCAGGCTCTGATAACAATGGTGGAGGCTTGACAGATCTGATGAGATCCAGTCttgtgtgttctttttttttctggcaagCATTCACTTTGAAGAACTGTAATTAGAGCTGTTTTATCAGTGCACTGTGTCTCAAACCTTATCatgactgtttgtgtctctgtgggGTGTAAGTGCTGTAACTATGATTTTTATAACCTGGTCCTcaaatacctttttaaaataaatgtgtatgttgCCTTTTGATCATGCATGTCTGCATGATACTGTCCAGAAGCTCATATTGAGCAATTTGATCAGTAATTAAACATGAGGGTCGTTTAACTGATGGTCTGTGGTTGTCTCTCCGTCTGGTGCACGTCATGCCACCATCACCTCCTGCTGTTTTTTCCTGTCTTGTCCTCCCTTAAAATCACTCATTCACACCCCCAACACTTCCACCCTCTTAAAGGTCCATTCTTTATAATGGACCTTAGTTTCAAGTAAGTCTCAGTTTCTAGGTGATTTGTTCTACTGactttgt

Function

NR:

description
PREDICTED: forkhead box protein H1

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0001706 endoderm formation biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:0010159 specification of animal organ position biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0035054 embryonic heart tube anterior/posterior pattern specification biological_process
GO:0060971 embryonic heart tube left/right pattern formation biological_process
GO:0001568 blood vessel development biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0048327 axial mesodermal cell fate specification biological_process
GO:0014028 notochord formation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0048382 mesendoderm development biological_process
GO:0032525 somite rostral/caudal axis specification biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0001947 heart looping biological_process
GO:0021501 prechordal plate formation biological_process
GO:0021508 floor plate formation biological_process
GO:0060063 Spemann organizer formation at the embryonic shield biological_process
GO:0032444 activin responsive factor complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0019904 protein domain specific binding molecular_function
GO:0008301 DNA binding, bending molecular_function
GO:0070412 R-SMAD binding molecular_function

KEGG:

id description
K09400 FOXH; forkhead box protein H

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253256.1 True 2778 mRNA 0.46 4 5535173 5540436

Neighbor

gene id symbol gene type direction distance location
stat5b stat5b,LOC107716464,LOC107674616,LOC107653267,LOC107556764,LOC107727963,LOC107551841 coding downstream 30344 5487800 ~ 5504829 (-)
ghdc ghdc,LOC107556765,LOC107727961,LOC107716443,LOC107577004 coding downstream 48893 5477522 ~ 5486280 (-)
emc9 emc9,LOC107716469,LOC107551848,LOC107674563,LOC107727956,LOC107653261 coding downstream 115307 5415899 ~ 5419866 (-)
pelo pelo,LOC107653258,LOC107674509 coding downstream 168030 5360364 ~ 5367143 (-)
ccser2b LOC107716476,LOC107653247,LOC107727960,LOC107569472,LOC107674460 coding downstream 204940 5280381 ~ 5330233 (-)
adam11 adam11,LOC107716458,LOC107653271,LOC107727973,LOC107674663,LOC107551824 coding upstream 24172 5564608 ~ 5600663 (-)
dbf4b LOC107556759,LOC107727974,LOC107674674 coding upstream 62245 5602681 ~ 5613207 (-)
klhl11 klhl11,LOC107694394,LOC107556757,LOC107551837,LOC107674689 coding upstream 80702 5621138 ~ 5626937 (-)
aclyb LOC107727950,LOC107556756,LOC107674696,LOC108431393 coding upstream 88310 5628746 ~ 5658945 (-)
buc2l NA coding upstream 145090 5685526 ~ 5690389 (-)
G85572 NA non-coding downstream 1081897 4452755 ~ 4453276 (-)
G85569 NA non-coding downstream 1122973 4411340 ~ 4412200 (-)
G85553 NA non-coding downstream 1222125 4312579 ~ 4313048 (-)
G85551 NA non-coding downstream 1223269 4311453 ~ 4311904 (-)
G85545 NA non-coding downstream 1250238 4275337 ~ 4284935 (-)
G85868 NA non-coding upstream 186868 5727304 ~ 5731090 (-)
G85889 tgfb1i1 non-coding upstream 270221 5810657 ~ 5814446 (-)
G85891 NA non-coding upstream 279913 5820349 ~ 5821178 (-)
G85892 NA non-coding upstream 296936 5837372 ~ 5837674 (-)
G85893 NA non-coding upstream 298123 5838559 ~ 5838957 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other downstream 108662 5423084 ~ 5426511 (-)
G85779 atp2a1l,LOC107551849,LOC107716472,LOC107653256,LOC108274121,LOC107094295 other downstream 138261 5322478 ~ 5396912 (-)
LOC122355055 LOC107668612,LOC107583503,LOC107750859,LOC107717092,LOC107671135,LOC107559032,LOC107552862 other downstream 1118276 4412573 ~ 4416897 (-)
trnal-uag_71 NA other downstream 1138680 4396412 ~ 4396493 (-)
trnal-aag_72 NA other downstream 1142018 4393074 ~ 4393155 (-)
G85925 NA other upstream 444553 5984989 ~ 5987780 (-)
G85930 LOC107711793,LOC107755027 other upstream 450477 5990913 ~ 6012111 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other upstream 510732 6051168 ~ 6078068 (-)
G86049 LOC101886504,LOC101886427 other upstream 1129883 6670319 ~ 6671247 (-)
G86108 NA other upstream 1563444 7103880 ~ 7104218 (-)

Expression


Co-expression Network