LOC122355212 (LOC107561990,LOC107575498)


Basic Information

Item Value
gene id LOC122355212
gene name LOC107561990,LOC107575498
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 218214 ~ 222873 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253266.1
CCAGTAACTTACAGTCACAACTCAACAGAGACATCATCGCTCCTCTTTGGACAGACATGGACAACACTGTCAATGGAACAATCTCCTATCGTCAGGTCACCAGTGGTGGACTCTTACTAGCAGCTTCAAACAGCATAAACCAGTATTTTCCCAATCTGAACTTCACTGCCTCATGGCTGTTCATTGCCACTTGGGATAAAGTACCCTACTATAACAACTTACAATCGAGTTCATCTTTTCAAGTTGTTTTGGTCTCTGGTGGTCCTCTGTCTTTTGTCATGATGAACTACGGAAATATCTCCTCTACGAATCAACCGTTTCAGGCTGGCTATGGCACTGTAAACTCAACAAATTACTTTTCAATACCTGTGCCTGATGAAAATAAGCTCTTCAACTCCACCAATGTCAATGTGCCAGGACGCTGGGCATTTCGTGTTGATGGTGGACCTAAGGAAGGAATTTTCTACCCATATGGAGATCAGGATACAAAAAACCCTGCACAGTATTTTGGAGGTTCTCCACTCATCCCCCTGGCACAGCCGTTTGTCTACTTTGGGCAAATTTATAATCAACTATATGTGAATAACAAGGGATATGTGACTTTTGGTGGGCCATTTTACCAGTCGTATCCCAACTCTTTTCCTGCATACTCTACAAGAGACATCATCGCTCCACTTTGGACAAACATTGACATTACACAGAGAGGAACTGTCTCTTACCGACAAGTAAATGATCCTCGTCTCTTGAATTGGGCCTCAAAAGACATAAACCAATATTACCCAAACCTGAACTTTTCTGCTTCATGGGCTTTAATTGCTACATGGGATAGAGTACCAAACTACATATATGGACAAACATCGACCTTTCAGGTGGTTTTGGTGTCTGgcaaaaacatgtcattttcaCTCATACATTATGGTCATATTGCCCCAACATATTATATGCAGTCTGGCTATGACACAAGTGACTCCACTGATTTCTTTTCGATTCCTGTCTCCGACGTTACATACCTTTCATACACAAGCAACGTCAACGTCATGGGTCGATGGGTATTTCGAGTTGACCTTGCATCAGACAACAGTGgactgTTCTATCCATTTAGGAACAGCCCCAAACTAAACCTTCTACCGTATTATGGATTTTGGATTGGCTACATGCAGGCTCCATTTTCTTACTTTGGGCTCACATACAGATATGTTTATgtcCACAAAAATGGATTTCTTACATTCAACTGGCCATCCTTTCCATTAAATTCCCCAACTTTTCCTGCAAATATAGACATTGTTGCTCCACTGTGGACAGATATTGACTACAGTCAAATTTACATTCAACAATTCAGAGGTGTCCGAGTACTACAGAGAGTTACAAATAATATACGTCAATATTTCCCTAACGCAAATTTCACTGCCAACTCAGTTTTTGTTTGTACTTGGGATAAAGTTGCTTATTCCAACACTTCAGCACAGaatTCCTCTTTTCAGTTACTGCTGATCTCTGGTTCTGGATTgacattcattatatttaattatggtAGTATTCCCCAAACTAAAAATATTGCTCTGGTGAGAAAGCTTTTACAAGTcttgtacttaaaaaaaaaaacatttaacggcatttaaatttttaagattaaatataCTTGTAGAGATGTAACAGAACTGTTTTACAGCACTGTTAGATTTTTAGCTACAGCTCCTATTATGCAAAGATCAACCTGTTCTCTAACCAATAAGCCTCTAGGTTGTTTGTCCAATTCCCCTGAAACACGTCCCATCAGAGCTTATACTACAATTGTGCACCTATTGGTAACaggacattttcatatttatgtttgtttatctgGGTTTTGGTGTACCTCAGTTGGCAGCGCATTTAGTTATACAATGAAATGCAATGATAGGTTTGATTAAATAAACTTGCATTTTGATAAGCAATGACAAACATGCATCAtattatgatgatttttatGCCTGCTGGATGGCGcttaactttaaaatgcaaatataggCGCTTGCACAAACAACCTATAGGATTGTTTTTTGTTGAGAGAAAGGCTGCCGTATATCTGTAACGAATATGCTTGTAATCATTGTTTAGGCTGGATATGACACTATTGATTCTACCAGTTATTATACAATTCCTGTGCCTAACATCGCTAACCTGGCCTTTTCCACAAACATTAATG

Function

NR:

description
PREDICTED: uncharacterized protein LOC107561990

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253266.1 True 2185 mRNA 0.39 10 218214 222873

Neighbor

gene id symbol gene type direction distance location
LOC122355756 LOC107660458 coding downstream 10146 193733 ~ 208068 (-)
LOC122355205 dlx4b,LOC107739765,LOC107664616,LOC107708902,LOC107557342 coding downstream 41511 171762 ~ 176703 (-)
LOC122355848 akt2l,akt2,LOC107722100,LOC107671613,LOC105023568,LOC107711004 coding downstream 107088 103795 ~ 111126 (-)
LOC122355847 LOC107690849,LOC107671610,LOC107710396,LOC107565533,LOC107575145,LOC107575144 coding downstream 155171 44012 ~ 63043 (-)
LOC122355214 LOC107561990,LOC107575498 coding upstream 1005 223878 ~ 228330 (-)
LOC122355215 vkorc1,LOC107719575,LOC107598672,LOC107654009,LOC108413442 coding upstream 10393 233266 ~ 234678 (-)
LOC122355213 zgc:92313,LOC107719557,LOC107708960,LOC107664633,LOC107598673,LOC107653945,LOC107557352 coding upstream 19957 242830 ~ 247565 (-)
LOC122355757 LOC107557351,LOC107719532,LOC107654013,LOC107708952,LOC107598581,LOC107664606,LOC107708954 coding upstream 49393 272266 ~ 290655 (-)
LOC122355360 LOC107598582,LOC107654016,LOC107732180,LOC107708889,LOC107664586 coding upstream 69168 292041 ~ 298114 (-)
LOC122355220 LOC107561990,LOC107660458 non-coding downstream 19347 197400 ~ 198867 (-)
LOC122355221 LOC107561990,LOC107660458 non-coding downstream 20821 196901 ~ 197393 (-)
G84487 NA non-coding downstream 77133 140100 ~ 141081 (-)
G84492 LOC107565537,LOC107671635,LOC107690840 non-coding downstream 128640 88055 ~ 89574 (-)
LOC122355197 NA non-coding upstream 159699 382572 ~ 385022 (-)
LOC122355423 NA non-coding upstream 163016 385889 ~ 386457 (-)
G84547 NA non-coding upstream 255150 478023 ~ 478431 (-)
G84654 NA non-coding upstream 387194 610067 ~ 611847 (-)
G84666 slc35g1,si:ch211-197g18.2,LOC107598601,LOC107654036,LOC107664634,LOC107664593,LOC107557359,LOC107708939 non-coding upstream 437216 660089 ~ 663746 (-)
LOC122355191 dusp3b,LOC107753093,LOC107590411,LOC107688089,LOC107709997 other downstream 46919 168048 ~ 171295 (-)
G84486 emsy,LOC107671635,LOC107690840,LOC107722098,LOC107565537,LOC107747365 other downstream 88229 78617 ~ 129985 (-)
G84485 vaspa,LOC107722097,LOC107565535,LOC107710395,LOC107671612,LOC107575450 other downstream 95447 12045 ~ 122767 (-)
G84521 NA other upstream 96457 319330 ~ 321260 (-)
prr12a prr12a,LOC107708947,LOC107664611,LOC107598586,LOC107654018,LOC107732166 other upstream 117400 340273 ~ 360482 (-)
LOC122355759 NA other upstream 261565 484438 ~ 490379 (-)
zgc:163073 LOC107653918,LOC107732170,LOC107708955,LOC107557349,LOC107664608,LOC107598675 other upstream 274091 496964 ~ 500219 (-)
ifnphi4 LOC107653919,LOC107732171,LOC107598640,LOC107664622,LOC107708945,LOC107557348 other upstream 320373 543246 ~ 552443 (-)

Expression


Co-expression Network