LOC122355215 (vkorc1,LOC107719575,LOC107598672,LOC107654009,LOC108413442)


Basic Information

Item Value
gene id LOC122355215
gene name vkorc1,LOC107719575,LOC107598672,LOC107654009,LOC108413442
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 233266 ~ 234678 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253269.1
AAAAGCGCGATGTCCTCCGCTGGAGTTCCTAAATGGGAATATCGCGTCCGCTTCCTCCTGTGTTTTCTCGGGTTGGCTCTGTCGGTTTACGCGCTGCACGTCGAGCTTTCCCGGGAGAACGATCCCGAATATCGCGCGATGTGCGACCTGGGCCGTTCCGTGAGCTGCTCTAAAGTCTTCACGTCCAGATGGGGACGCGGATTTGGACTCGTCCAGATCTTTACTTCCAAAGACAGCGTGTTAAACCAGCCGAACAGTGTATTAGGAATCGTTTTCTATGCATTGCAACTGGGTTTAGGTCAGCTGGCGTCCAGCAGGGCGGCGCTCTTCCTCGTCGGGTCCTCCTGGGTGTCCGTGGCTGGATCCGTGTATCTGGCTATCATCCTGGCGTTCGTCCTGGGCGATTTCTGCGTGGTCTGCGTCTCCACCTACATCGTAAACTTTGCACTTCTCTACACAAACCTGAAGAGAAGGACGGGACTGGAGGGACGCCTGAAAAGAGCGAAGAGGCAGTGAAATCGTTTTTGAAGACACCTGGGGTTATGCTTATCGCTGCGAATCagattcattatttataaaacacgTGCTTCGTGCTTGTTACATGTACAGTGTGAAACCAGTTTCTGATTAAAAGATCAATTAATGCTCAATGTGTTGAATAAAGTCAGATTTTCTATTAAATCATCTTTCATTTT

Function

symbol description
vkorc1 Predicted to enable vitamin-K-epoxide reductase (warfarin-sensitive) activity. Predicted to be involved in blood coagulation; peptidyl-glutamic acid carboxylation; and vitamin K metabolic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in several structures, including head; liver; muscle; pleuroperitoneal region; and vertebra. Human ortholog(s) of this gene implicated in combined deficiency of vitamin K-dependent clotting factors 2 and warfarin resistance. Orthologous to human VKORC1 (vitamin K epoxide reductase complex subunit 1).

NR:

description
PREDICTED: vitamin K epoxide reductase complex subunit 1-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0047057 vitamin-K-epoxide reductase (warfarin-sensitive) activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253269.1 True 695 mRNA 0.49 3 233266 234678

Neighbor

gene id symbol gene type direction distance location
LOC122355214 LOC107561990,LOC107575498 coding downstream 4936 223878 ~ 228330 (-)
LOC122355212 LOC107561990,LOC107575498 coding downstream 10393 218214 ~ 222873 (-)
LOC122355756 LOC107660458 coding downstream 25198 193733 ~ 208068 (-)
LOC122355205 dlx4b,LOC107739765,LOC107664616,LOC107708902,LOC107557342 coding downstream 56563 171762 ~ 176703 (-)
LOC122355848 akt2l,akt2,LOC107722100,LOC107671613,LOC105023568,LOC107711004 coding downstream 122140 103795 ~ 111126 (-)
LOC122355213 zgc:92313,LOC107719557,LOC107708960,LOC107664633,LOC107598673,LOC107653945,LOC107557352 coding upstream 8152 242830 ~ 247565 (-)
LOC122355757 LOC107557351,LOC107719532,LOC107654013,LOC107708952,LOC107598581,LOC107664606,LOC107708954 coding upstream 37588 272266 ~ 290655 (-)
LOC122355360 LOC107598582,LOC107654016,LOC107732180,LOC107708889,LOC107664586 coding upstream 57363 292041 ~ 298114 (-)
LOC122355359 LOC107654014,LOC107664598,LOC107557378,LOC107708888 coding upstream 63930 298608 ~ 318529 (-)
irf3 NA coding upstream 98899 333577 ~ 338993 (-)
LOC122355220 LOC107561990,LOC107660458 non-coding downstream 34399 197400 ~ 198867 (-)
LOC122355221 LOC107561990,LOC107660458 non-coding downstream 35873 196901 ~ 197393 (-)
G84487 NA non-coding downstream 92185 140100 ~ 141081 (-)
G84492 LOC107565537,LOC107671635,LOC107690840 non-coding downstream 143692 88055 ~ 89574 (-)
LOC122355197 NA non-coding upstream 147894 382572 ~ 385022 (-)
LOC122355423 NA non-coding upstream 151211 385889 ~ 386457 (-)
G84547 NA non-coding upstream 243345 478023 ~ 478431 (-)
G84654 NA non-coding upstream 375389 610067 ~ 611847 (-)
G84666 slc35g1,si:ch211-197g18.2,LOC107598601,LOC107654036,LOC107664634,LOC107664593,LOC107557359,LOC107708939 non-coding upstream 425411 660089 ~ 663746 (-)
LOC122355191 dusp3b,LOC107753093,LOC107590411,LOC107688089,LOC107709997 other downstream 61971 168048 ~ 171295 (-)
G84486 emsy,LOC107671635,LOC107690840,LOC107722098,LOC107565537,LOC107747365 other downstream 103281 78617 ~ 129985 (-)
G84485 vaspa,LOC107722097,LOC107565535,LOC107710395,LOC107671612,LOC107575450 other downstream 110499 12045 ~ 122767 (-)
G84521 NA other upstream 84652 319330 ~ 321260 (-)
prr12a prr12a,LOC107708947,LOC107664611,LOC107598586,LOC107654018,LOC107732166 other upstream 105595 340273 ~ 360482 (-)
LOC122355759 NA other upstream 249760 484438 ~ 490379 (-)
zgc:163073 LOC107653918,LOC107732170,LOC107708955,LOC107557349,LOC107664608,LOC107598675 other upstream 262286 496964 ~ 500219 (-)
ifnphi4 LOC107653919,LOC107732171,LOC107598640,LOC107664622,LOC107708945,LOC107557348 other upstream 308568 543246 ~ 552443 (-)

Expression


Co-expression Network