lrrc3ca (lrrc3ca,lrrc3c,LOC107598050,LOC107716457,LOC107660473,LOC107678436)


Basic Information

Item Value
gene id lrrc3ca
gene name lrrc3ca,lrrc3c,LOC107598050,LOC107716457,LOC107660473,LOC107678436
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 3974760 ~ 3982557 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253277.1
AAAGCTCGCGCTGCGTGCGGATCTCCAGCACTAAACCAGAAGGAATATTTGTGCAAATGTCACTGAACTGCCTTTTCTTCAGCAATCCCGCGAAGGCGAATGCCGAAAAGAGCAGATGTGATCTCAGAAGACAGAGAGGAGAAATGGTTGCAAGCTGTTGGGCATTTTGATGTTGGGTACAGCCCCCTGGATGCTCTCAGCACAGGTTGTACTCTAAAGGGATTATGCCCGCTGTCCCACAATGCTGCTACCTTCAGGTTGGCTGCTTCGGCACTCTGTGGTCATGTGGTTGCTTTTTCACAGCTTAGTGCTGATGACACTGTGTTTCCACCATGCTGCGACTTCCTGCTCCAAACGCTGCTACTGTTCAGACAGCGAGGGCTCATTTGGCGGTAAGACTATGCGCTGCAGCAACCTGCATCTTACTGAGATCCCTCAGGACATTCCCAATGACACACAACGCCTCTACCTGGACTACAACCTCCTGACTAGTATCCCTGCCAATGCCTTTCATGATCTTCCACTGCTAGCTGAATTGGATCTCTCCCATAACGAACTAGCTTTACTTGAACCAGGAGCCTTTAGAGGCTTGGGCGTCTCTCTACAATTTCTGGATCTGTCGTCAAACCAGCTCAAGACACTAGACCCAGATGCCTTTGAAGGTGTTAGAGCACGATCCAACCTCACTGGAAACCCCTGGCACTGTGACTGCAGGCTGCAGACAGCCCTTCCACGCTTAGACCTAGAGCCTGTGTCTTTGACTGGCATTATCTGTCAGACATCTGAGCCCTCAGACTCTGAAGCCAATGGCGTGCCTTTCCTGCTGGCCAAAGACCTGGACCTGTGTGTGGTGCTCAAAAAGACCACGGACGTGGCCATGTTGGTGACCATGTTTGGATGGTTCACCATGGTCATCTCCTATCTGGTCTACTATGTGAGACACAATCAGGAAGATGCCAGGCGCCACCTGGAGTATCTCAAGTCTCTGCCCAGCAGGCAGGGCAAGTCTGAGGAGTCTTCCACCATTAGCACTGTGGTATAGTGCCAGGTCAAGTGCTTATGATATGTGGAGGAAGCTTCTCAGGCTGCCAAAAGGCAATGGCACATTGGACACTGGGCTTCCGGtctctaaaacataaaattgatcaaacctgtaggaaaaaaaagaataatggcTTTGTATCCCTTGAATAACAGATAACTCACTTCAAGGTACCACTCAGGATTGTTCAGAACCCTCCCAAAGAACCAGGAAGAACTTCTAACGTAGGATGCTTTGTGGTCAGTGGATTGCAATGTTCACAATAGGGAAATGTGAAACATATCATGCTAAAACCATCCACATATGCACGCATGGACAGAGATGACTGGAGACAGAAGGAGGGAAATCACAGGGGCCATCTAATCCAATTCAGATAAATAATTGATTCAGAAATGGCCGAGCTTGAGGCTCATCTTTACTAAGAGGTTTGTCTGCTCTGCATGCTTTTAAAGGAGGcgttgtctgttttttttcatccagtGGTTCTTTTTTCAGTCAGATTCCCATTTGGCAGGCAGCACACGAAGCGTAAAGCACTCATCCTACTGGGTATTTACAAAAAGTACTGTTGTTGTCCCTGCAGGCAACATCAAAATTTTACAGAGCaacacatttttgcatgcatCAATGATTTTTCAGGTGTCTCAGTAAACATATACAAactgtgcaaaagaaaaaagcacTGTAGTTTGCTTTGATACTCAGTGGTTAGATTTTTAGGGGAGCACAGAAAATGGTTAATTATTTTCTTCGTGAATCCTGCAGTCTTACTGACTCTGTgtcttaaaagaaataaacaggtTAGCTTGTTATTTTTGTGATCAGTCACTAGCTGTAAGATAAATCACTGTTGTCGTTTCTAAGGAAACCCCTgagacactttaaaaaaatgaattaaaacgtTTCAAACTTTTATGTTTAAAGATAATGAGATGATGTTGACCACCACATAGTGTGCTTGCACTGTTAGAGCGGATCCTTGGTATGTCACATCCAATACTGTGTGATTGTTCAGTTTCTTATGTTGAGTGCCAGCAGGGATAATTCAGAATGTCTGCCAAGATAAATCTTAAGTTGAAATCCA

Function

symbol description
lrrc3ca Predicted to be active in extracellular matrix and extracellular space. Orthologous to human LRRC3C (leucine rich repeat containing 3C).
lrrc3c Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space.

NR:

description
leucine-rich repeat-containing protein 3B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253277.1 True 2126 mRNA 0.45 2 3974760 3982557

Neighbor

gene id symbol gene type direction distance location
csf3a LOC107716456,LOC107598027,LOC107660487 coding downstream 8458 3963315 ~ 3966302 (-)
top2a top2a,LOC107598028,LOC107660475,LOC107091052 coding downstream 43101 3917420 ~ 3931659 (-)
raraa raraa,rara,LOC107716487,LOC107745620,LOC107571738,LOC107660476,LOC107678286,LOC105935622 coding downstream 92977 3766347 ~ 3881783 (-)
vps35l zgc:163107,cunh16orf62,cssa28h16orf62,LOC107678404,LOC107716486,LOC107660477 coding downstream 210309 3753578 ~ 3764451 (-)
c12h10orf88 si:rp71-19m20.1,LOC107716483,LOC107598032 coding downstream 244311 3725084 ~ 3730449 (-)
trnal-uag_4 NA coding upstream 12534 3995091 ~ 3995185 (-)
trnal-aag_33 NA coding upstream 12694 3995251 ~ 3995332 (-)
trnal-uag_5 NA coding upstream 14194 3996751 ~ 3996830 (-)
trnal-uag_6 NA coding upstream 15469 3998026 ~ 3998107 (-)
trnal-aag_34 NA coding upstream 15637 3998194 ~ 3998274 (-)
G85435 NA non-coding downstream 13407 3960763 ~ 3961353 (-)
G85389 NA non-coding downstream 253737 3615842 ~ 3721023 (-)
G85372 NA non-coding downstream 599809 3373377 ~ 3374951 (-)
G85355 NA non-coding downstream 815017 3156816 ~ 3159743 (-)
G85342 NA non-coding downstream 937176 2950836 ~ 3037584 (-)
G85487 NA non-coding upstream 135248 4117805 ~ 4175223 (-)
G85511 NA non-coding upstream 193433 4175990 ~ 4176266 (-)
G85515 NA non-coding upstream 201025 4183582 ~ 4188337 (-)
G85541 NA non-coding upstream 285446 4268003 ~ 4269616 (-)
G85545 NA non-coding upstream 292780 4275337 ~ 4284935 (-)
G85366 NA other downstream 675072 3258531 ~ 3299688 (-)
LOC122355711 rara,LOC107700643,LOC107717720,LOC107565243,LOC107563215,LOC107719850,LOC108434941,LOC108261354,LOC107554136,LOC107737746,LOC108276117 other downstream 871445 3089629 ~ 3103315 (-)
G85232 LOC107663296,LOC107583514,LOC107733536 other downstream 1193407 2767908 ~ 2781353 (-)
jmjd1cb jmjd1c,LOC107745648,LOC107654065,LOC107695544 other downstream 1689708 2173988 ~ 2285052 (-)
ank3b ank3b,LOC107654059,LOC107695539 other downstream 2027348 1814083 ~ 1947412 (-)
kcnh6b LOC107684759,LOC107753307,LOC107573422 other upstream 234847 4217404 ~ 4230039 (-)
LOC122355775 NA other upstream 315310 4297867 ~ 4305215 (-)
trnal-uag_49 NA other upstream 362828 4345385 ~ 4345467 (-)
trnal-uag_50 NA other upstream 365141 4347698 ~ 4347779 (-)
trnal-aag_58 NA other upstream 365305 4347862 ~ 4347942 (-)

Expression


Co-expression Network