polr2a (polr2a,LOC107733452,LOC107584383,LOC107556578,LOC107738966)


Basic Information

Item Value
gene id polr2a
gene name polr2a,LOC107733452,LOC107584383,LOC107556578,LOC107738966
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9622803 ~ 9635117 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253295.1
GCACTGGAGTGTAGATCGGGGAAAGGGAAGGGGACAGCTCGTAGCTACAATAGCTAgtatataaacacaaatttaaaagcacattGAGTAGCAAGATACGGTGGTCACTGGGAAACCGCCATCGGACAAGTTCCGGTCACCATTGGGTGCCAGGAGAGTCTTGGTGGCGTTTCAGAGGTGTTCCTTCTTACAAAGCGGCGTGCCGGGGGAGGACGCGTCTCTTTGAATAGACAGGATGCACGGACCGCCTTCCAGCGACAGCGCATGCCCATTGCGCCTCATCAAGAGAGTGCAATTCGGCGTCCTCAGCCCTGATGAACTTAAACGGCTGTCCGTTACTGAAGGGGGCATCAAGTACCCTGAGACCACAGAAGGAGGACGTCCTAAACTGGGGGGACTTATGGACCCCCGGCAAGGGGTAATTGAAAGATCAGGCAGATGCCAGACGTGTGCAGGTAACATGACTGAGTGCCCTGGTCATTTCGGTCACATTGAGCTGGCTAAGCCAGTCTTTCATGTTGGCTTCATCACAAAGATCATGAAGGTCCTCCGATGTGTCTGTTTCTTCTGTTCAAAACTTCTTGTGGATGCGAACAATCCGAAAATCAAAGACATCTTGGCCAAGTCAAAGGGGCAGCCACGGAAGCGTCTGACCCATGTCTATGACCTCTGTAAAGGCAAAAACATCTGCGAGGGAGGAGAAGAGATGGACAACAAGTTTGGAGTGGAGCAGCAGGAGACCGAAGAAGACCTCACCAAAGAGAAGGGTCATGGAGGCTGTGGCAGGTACCAGCCACGTATCCGTCGTTCTGGCCTGGAGCTTTATGCAGAGTGGAAACACGTGAATGAAGACTCGCAGGAGAAGAAGATTCTCCTCAGCCCTGAACGTGTGCATGAGATCTTCAAACGCATTTCGGATGAAGAGGACATGATCTTGGGCATGGACCCCAAATTCGCCCGTCCAGAGTGGATGATTGTCACAGTGTTGCCTGTGCCACCTCTTGCTGTCAGACCAGCTGTGGTCATGCAGGGTTCTGCTAGAAACCAGGATGATTTAACACACAAGTTGGCTGACATTGTGAAGATCAATAACCAGCTGAAGCGAAATGAACAGAGTGGAGCTGCAGCACATGTTATAGCAGAGGATGTCAAGCTGCTTCAGTTCCACGTGGCCACCATGGTAGACAATGAACTGCCAGGTCTACCTAGGGCAATGCAAAAGTCTGGTCGACCACTGAAATCTATCAAGCAGAGGCTAAAGGGTAAAGAAGGACGTGTCAGAGGAAATCTGATGGGGAAGCGTGTAGATTTCTCTGCCCGAACCGTCATCACACCTGACCCCAACCTGCAGATTGACCAGGTGGGCGTTCCTCGTTCCATCGCTGCAAACATGACCTTCCCTGAGATTGTCACACCCTTTAACATTGACAgACTCCAAGAGCTTGTGAGGAGAGGTAACAGTCAGTACCCTGGAGCCAAATATATCATCCGTGACAACGGGGACAGAATTGACCTGCGATTCCACCCTAAACCAAGTGACCTTCACCTTCAGATTGGATACAAGGTTGAACGACACATGTGTGATGGAGACATTATTGTGTTCAACAGACAGCCTACGTTGCACAAAATGTCTATGATGGGCCACAGAGTGCGAATCTTGCCTTGGTCAACATTTCGACTCAACCTCAGTGTGACAACCCCATACAATGCTGACTTTGATGGTGATGAGATGAACCTGCACTTGCCACAGTCCCTGGAGACCCGTGCTGAGATCCAAGAGCTGGCCATGGTGCCTCGTATGATTGTCACACCACAGTCCAACAGACCAGTCATGGGTATTGTGCAGGACACACTGACAGCTGTGCGCAAGTTCACCAAGAGAGATGTTTTCTTGGAGAGGGGTGAGGTGATGAACCTCCTCATGTTTCTCTCCACATGGGATGGCAAAGTGCCCCAACCAGCAATCTTGAAGCCTCGACCTCTCTGGACTGGCAAACAGATCTTCAGCCTGATCATCCCAGGGCACATTAATGCCATCCGTACGCACAGTACTCACCCTGATGAAGAGGACAGCGGCCCTTACAAAAACATCTCCCCTGGAGACACTAAGGTGATTGTGGAGAATGGTGAGCTGATCATGGGCATCCTGTGCAAGAAGTCATTGGGAACCTCAGCTGGCTCTCTTGTCCATATCTCATACCTTGAGATGGGCCATGACATTACACGACTCTTCTATTCTAACATCCAGACTGTTGTCAACAACTGGCTCCTAATTGAggGTCACTCTATTGGTATTGGAGACTCCATTGCCGATAAGGCGACATATCAAGACATTCAGAACACAATTAAGAAGGCCAAACAGGATGTGATAGAGGTCATTGAGAAAGCCCACAACAATGAGTTGGAGCCCACCCCAGGTAACACTCTGAGACAGACCTTCGAGAACCAGGTCAACCGCATTCTGAACGATGCTCGAGACAAGACTGGATCCTCAGCCCAGAAGTCATTGTCTGAGTACAACAACTTCAAATCCATGGTGGTGGCTGGTTCAAAAGGctctaaaattaacatttctcaGGTTATTGCTGTGGTGGGACAGCAGAACGTGGAGGGTAAACGAATCCCCTTCGGTTTCAAGCACCGCACCCTCCCTCATTTCATTAAAGATGACTATGGTCCAGAAAGTAGAGGCTTTGTAGAAAACTCCTATCTGGCCGGTCTCACACCAACTGAGTTTTTCTTTCACGCCATGGGAGGCAGAGAGGGTCTGATCGACACAGCTGTCAAAACTGCTGAGACAGGTTATATTCAGCGCCGTCTGATCAAGTCTATGGAGTCTGTTATGGTCAAGTATGATGCTACTGTCAGAAACTCCATTAACCAAGTTGTCCAGCTGAGGTATGGAGAGGATGGTCTGGCAGGAGAAGCTGTCGAGTTCCAAAACATGGCTACCCTTAAGCCGTCCAACAAAGCCTTTGAGAAAAAGTTCAAGTTTGACTACACCAATGACAGAGCTCTTCGCCGCACTCTACAGGAAGATGTGGTGAAAGATGTGATGACCAATGCCCACGTCCAAAGTGCTCTAGAGAGGGAGTTTGAGAAGATGAGGGAAGACCGAGAGATCTTGAGGGCCATTTTCCCCACAGGCGACAGCAAGGTGGTACTACCGTGCAATTTGGCTAGAATGATCTGGAATGCTCAGAAGATTTTCCGCATCAATCCTCGAACACCAACTGACCTCAACCCAGTACGAGTAGTGGAAGgAGTTCGTGAGTTGAGTAAGAAACTGGTGATCGTAAATGGTGATGACCAGTTAAGCAGGCAAGCCCAGGAGAACGCCACTCTGCTGTTCAACATCCACCTGCGCTCTACCCTGTGCTCCAAGAGAATGACTGAAGAGTTCCGTCTTAGCACAGAGGCTTTTGATTGGCTGTTGGGAGAGATAGAGACCAAATTTAACCAATCCATTGCTCACCCTGGTGAGATGGTAGGTGCTCTGGCTGCTCAGTCTCTTGGAGAGCCTGCTACTCAGATGACCCTGAACACATTCCACTACGCCGGTGTGTCCGCCAAAAACGTCACTCTCGGTGTGCCTCGACTCAAAGAGCTTATCAACATCTCCAAGCGACCCAAGACCCCCTCCTTGACAGTCTTTCTCCTGGGCCAAGCGGCCCGTGACGCAGAGAGGGCCAAAGATATCCTGTGTCGTTTGGAGCACACAACCCTGCGCAAGGTCACTGCCAACACAGCCATTTATTATGACCCCAACCCACAGAACACTGTGGTGACTGAGGATCAGGAGTGGGTCAATGTGTACTATGAGATGCCTGACTTCGACGTGACCCGCATTTCACCTTGGCTGCTGCGTATCGAGCTTGACCGCAAACACATGACTGACCGTAAGCTGACTATGGAGCAGATCGCAGAGAAGATCAATGCAGGATTTGGTGATGACCTTAACTGCATCTTCAATGATGACAATGCTGAGAAACTGGTTTTGCGAATCCGCATCATGAATAGTGATGAGAACAAGTTTCAAGAGGATGAGGAGGTAGTGGATAAGATGGATGACGATGTCTTCCTTCGCTGCATTGAATCCAACATGCTGACAGACATGACACTGCAAGGCATTGAGCAGATCAGCAAGGTATACATGCATCTGCCACAGACTGACAACAAGAAGAAAATTATCATCACAGAAGAAGGAGAGTTTAAAGCTTTGCAGGAGTGGATCCTGGAAACCGATGGAGTCAGTCTCATGAGGGTCCTCAGTGAGAAGGATGTGGACCCTGTCAGAACCACATCCAACGACATTGTGGAGATTTTCACTGTTCTTGGTATTGAGGCTGTGCGTAAGGCTCTGGAAAGAGAGTTGTACCATGTCATCTCCTTCGACGGTTCTTATGTTAACTACCGCCATCTTGCCTTGCTGTGTGACACGATGACCTGTAGGGGTCACTTGATGGCCATCACTCGTCATGGTATCAACAGGCAGGACACTGGACCCTTAATGAAGTGCTCTTTTGAAGAGACGGTGGATGTGTTGATGGAAGCCTCATCTCATGGAGAATGTGACCCAATGAAAGGAGTGTCTGAGAATATCATGCTGGGACAGCTGGCTCCTGCAGGCACTGGTTGCTTTGACCTGTTGTTAGATGCTGAGAAGTGCAAGTATGGTATGGAGATTCCCACCAACATTCCTGGTATCAGTGTTGCAGGACCCACAGGTATGTTCTTTGGCTCTGCTCCCAGCCCCATGAGTGGCATGTCTCCTGCCATGACTCCCTGGAACACAGGAGCCACTCCTGCATATGGTGCTTGGTCTCCCAGTGTTGGAAGTGGAATGACACCAGGTGCTGCAGGCTTCTCTCCCAGTGCTGCATCTGATGCTAGCGGCTTTTCGCCTGGTTATTCTCCTGCCTGGTCTCCTACTCCTGGTTCTCCTGGATCCCCTGGACCAGCTAGCCCTTATATCCCTTCACCAGgAGCCTTGTCTCCAAATTACTCTCCAACTTCTCCTGCCTACGAGCCTCGCTCTCCTGGTGGATATACCCCACAGAGCCCTGGTTATTCTCCAACCTCTCCGTCATACTCTCCGACTTCACCATCTTATTCACCCACCAGTCCGAACTACAGCCCCACATCTCCGTCCTACTCACCCACATCACCCTCCTACTCTCCAACGTCGCCATCTTATTCTCCAACATCTCCAAGCTACTCTCCAACTTCACCTTCTTACTCGCCGACTTCTCCGTCTTACTCCCCTACTTCACCATCCTACTCGCCAACGTCCCCCAGCTATAGCCCAACATCTCCCAGCTACAGCCCAACCTCCCCGAGTTACAGCCCCACGTCTCCTTCTTATTCCCCAACATCTCCATCCTATTCCCCGACCTCCCCGTCTTACTCTCCCACCTCTCCAAGCTACTCTCCAACCTCCCCATCCTATTCCCCAACATCTCCGAGCTACAGTCCCACTTCACCCAACTATACCCCCACCTCACCAAGTTACTCTCCAACCTCTCCATCTTACAGCCCCACCTCACCTTCCTACTCTCCCACCTCTCCCAATTACACCCCAACCAGTCCCAATTACTCTCCCACCTCTCCTTCTTACTCACCGACTTCACCGTCCTATTCTCCATCCAGTCCACGTTACACCCCACAATCTCCCACCTACACCCCAAGCTCGCCTTCTTACAGCCCAAGTTCTCCATCCTACTCCCCCACCTCTCCAAAATACACCCCCACCTCCCCCTCCTACAGTCCCAGCTCTCCCGAATATACACCAACATCCCCCAAATATTCCCCCACCTCCCCGAAGTACTCTCCCACTTCACCCAAATACAGTCCCACTTCTCCAACCTACTCCCCAACTACTCCCAAGTACAGCCCCACTTCCCCTACTTATTCTCCAACCTCTCCTACCTACACCCCAACCAGCCCCAAATATTCCCCCACCTCTCCGACTTACTCTCCAACGTCTCCAAAATACTCGCCTACATCCCCTACCTACTCTCCAACTAGTCCCAAGGGCTCCACCTACAGCCCCACTTCCCCCGGCTACAGCCCCACCTCTCCAACCTACAGCCCAGCCATCAGCCCTGATGACAGCgatgaagaaaataattaaagatgCTTGGTGCCGGGGTTTGTCCTACTTCCCTTATGGGCACTCTGACCCTGGGATAAAGACTGAAGGAAAGCCCCTCACCTGGGGTTGCTGTGATTTACAGGGAAGGCTAAGGAACCTGGGATCCCACATGTGACATCCTCATTTTTGATGTTTCTCTCTTGGACTTAATGAATTGTTCTTAAATAGCCTCACTAAACAGGCTTCAGTGGTTGCATCTTTTAGGTTAGAGGTTTGAACTACAAGCCAAACGAGGCTGCCTTTGTATAGACCGCTTTGGTCGCACTATGTTTAGAAGGAGAACTATTTCTCAAAATTGGTGGAAAGATGCAGGAGAGACTGCTTTTGGAGGAGAAAGATCTTTCCTTTCAGTCATTTCTgcctccctttttttttttctcaaattcagTGTTGGATGTAAAGGAAAGTATTGCCAAAAGccttcaaacagaaaacagtggATTGTATCTGAAAAGTTTCAAATGAAACCTTGAAAAATATCTATAACGTAAATAGAAAGGGGGAGAAACTGACCTCTCACATTTTACAGCTTTTAGTTTCTTCCCCAGTGTAAATAAGCTCTTGATCCcagttttgattattttattccaGATCTGAActgtttaaatattactgttgaTTTTTCTGTCTAATTTGAgttcttataaaaaaatatttctaaaggaGGTTCAAAGTGGCTGTTTATTAGAAACTTGTTGAAGCTGACACATATTGTGcagattaaaaatgtcttgtaaTACTGTAGTCTGTATGCCGGCCCGTGACATGGGTAAAAGTGTTGTGTAGTGATTGCCCTCTTTAAGAATTGGAGAGAGGGAACAGATGCTTTGAGGCATCAATTTTTCTAGTCAATTGTCCCCAAAAGATGCAAGCCTTATCCTTCACCCGCATCTGCCCAGTaacttacaataaaaaaaaaaaaaaccttggaaaaaaaaacggcGGTCTTGTACCTCTGAGTGCACAGAGGGGTGTAAAATTGacctttttgggtttttttttttttttttttttaatcctgagTGACAGTGGAGCCTGGCTTTACAAAAgatgcacctttttttttttttttttttctttttttttttttgtaaaccacCTAGGTTCAAATCTAACGAGTCCTTCTTTGTCCTCAGCACTCAACCCTTTAATATAATAAgtgtataattgtttttttcatgtgcATCATTACAATTGATCTGTTGTGATTTTACTGGggaaaagcattttattttttttgtgctggcTTCATTGGGTCAGCTTTGCTTTTTGGATTAAGTGCTTGGGGATGGGAGAAAGGTGCAGTTTGGTTTGTTTCCTTTCGAATATGCACTGTTTCATATCTAAAGTTTTCTCATCTGATTCTGAATTATCTTGTGCTTGAACAGTAGAGGGCGACAAAGACTGATTTGACTCGGGCGTTAGAGGCATTTAGATCTTTTTGAGTGttacctttttaaaatctgaacacGTGGCGACTGGTTCCCCCAACTAACTTTTCCATCAGGAAAGTGGTAGTTGACTTGTAAAAGATTTTTGATGCTTTTGCATATTTCAGCTTTAGATTTAAGGCCTTAGATCGCATTAGGGAGAGCAGTTCTGACAGTCTCTTTAATGCCCTTGTTTGCCTTCAGTTTCATGGATGTTTCAAACAAGTCCAGTTAATACTCTATACCCAGTCTCCCAGTtagggtgtgtgtgagtgtgcaagtgtgtgtgcatgaaagCATAAATGGAAAAGACAGGGTTTTCTTGAGTTTGAGTAATAACTGGGTCGGGTTTATGCGGAAAGGAGAATTTAAATTAAGAGAAATTGCCACTgtatagaaatcattctgatactTCATTCTCtgtatctgttttgttttgttttttttgacttaaaataaaaagtttgactaaactgtt

Function

symbol description
polr2a Predicted to enable DNA binding activity; metal ion binding activity; and nucleotidyltransferase activity. Predicted to contribute to RNA polymerase II activity. Predicted to act upstream of or within transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II, core complex. Is expressed in blastomere. Orthologous to human POLR2A (RNA polymerase II subunit A).

NR:

description
LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like

GO:

id name namespace
GO:0006366 transcription by RNA polymerase II biological_process
GO:0005665 RNA polymerase II, core complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0001055 RNA polymerase II activity molecular_function

KEGG:

id description
K03006 RPB1, POLR2A; DNA-directed RNA polymerase II subunit RPB1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253295.1 True 8062 mRNA 0.48 28 9622803 9635117

Neighbor

gene id symbol gene type direction distance location
hdlbpb hdlbpb,LOC107733459,LOC107657280,LOC107584388,LOC108430121,LOC108273755 coding upstream 47083 9559680 ~ 9575720 (+)
wnt3 wnt3,LOC107584390,LOC107556586,LOC107723638,LOC107665892,LOC108273758,LOC100707095 coding upstream 101141 9498576 ~ 9521662 (+)
mrpl27 mrpl27,LOC107657270,LOC107665862,LOC107584394 coding upstream 339723 9281191 ~ 9283080 (+)
ca10a ca10,ca10a,LOC107584395,LOC103361575 coding upstream 381311 9118929 ~ 9241492 (+)
caskin2 LOC107660851,LOC107734197,LOC107721987,LOC107692038,LOC564253,LOC101882765 coding upstream 679770 8896217 ~ 8943033 (+)
capgb capgb,LOC107733451,LOC107657288,LOC107665882,LOC107556576,LOC108430072 coding downstream 1356 9636473 ~ 9644761 (+)
si:dkey-219e21.2 LOC107556575,LOC107738991,LOC107665865,LOC107733449,LOC107657266,LOC107584401 coding downstream 13634 9648751 ~ 9653386 (+)
si:dkey-219e21.4 LOC107657292,LOC107733464,LOC107584381,LOC107665876,LOC107738992,LOC107556571 coding downstream 30235 9665352 ~ 9669102 (+)
LOC122355279 cdca9,LOC107733465,LOC107657294,LOC107584382 coding downstream 36404 9671521 ~ 9673314 (+)
LOC122355282 shisa9b,LOC107596862,LOC107550297,LOC107703332,LOC107674610,LOC107709140 coding downstream 139255 9774372 ~ 9780670 (+)
G86981 NA non-coding upstream 451 9619682 ~ 9622352 (+)
LOC122355291 NA non-coding upstream 6167 9610293 ~ 9616636 (+)
G86959 LOC107657285,LOC107733473,LOC107738963,LOC107665891 non-coding upstream 22121 9596293 ~ 9600682 (+)
G86943 NA non-coding upstream 135624 9481585 ~ 9487179 (+)
G86758 NA non-coding upstream 747348 8875115 ~ 8875455 (+)
G86984 NA non-coding downstream 19842 9654959 ~ 9655277 (+)
G87094 NA non-coding downstream 324621 9959738 ~ 9959969 (+)
G87095 NA non-coding downstream 325530 9960647 ~ 9960958 (+)
LOC122355662 NA non-coding downstream 443351 10078468 ~ 10098941 (+)
G87181 NA non-coding downstream 1254301 10889418 ~ 10889625 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other upstream 315972 9285663 ~ 9306831 (+)
arsg arsg,LOC107734203,LOC107660857,LOC107692046,LOC107554066 other upstream 770354 8836448 ~ 8852449 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other upstream 1424899 8195964 ~ 8197904 (+)
msrb1b msrb1b,LOC100705913 other upstream 1516023 8105148 ~ 8106780 (+)
LOC122355675 NA other upstream 1778720 7815823 ~ 7844083 (+)
mfsd8 mfsd8,LOC107738985,LOC107556570 other downstream 21552 9656669 ~ 9664139 (+)
LOC122355274 shisa9a,LOC107584108,LOC107734251,LOC107669237,LOC107554036,LOC107731434,LOC107692077 other downstream 122130 9757247 ~ 9767228 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other downstream 229697 9864814 ~ 9874515 (+)
LOC122355255 NA other downstream 247916 9883033 ~ 9899001 (+)
LOC122355192 opn4b,LOC107552747,LOC107739286,LOC107568552,LOC107582762,LOC107700131 other downstream 846375 10481492 ~ 10496277 (+)

Expression


Co-expression Network