xrcc6 (xrcc6,LOC107734244,LOC107584091,LOC107709651,LOC107554059)


Basic Information

Item Value
gene id xrcc6
gene name xrcc6,LOC107734244,LOC107584091,LOC107709651,LOC107554059
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8738942 ~ 8743606 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253322.1
TCACTCAAATTGTGGCGCACTGACTGGATGCATGCATGCGCGGGTGTAAGGGAATACGAAGTTCtattgctgaaaaataaaaaagtgactaATCTTACACTTAAGAAAACTTGCTTTGTTGTTTCCCAACTTCAATTGAAAACAACCCTGAAACGGTTCTTAGAGTAATGGCGGAGTGGAGAGAGTACTATCAAAACGAAGACGATGAGGTTGAGGAGGACGAAGAGGATTCTGGAGgtGATTACAAGATCAGTGGCCGCGACAGTCTGGTGTTTTTGGTTGATGCATCCAAAGAGATGTTCATCAAAGGTGAGCATGGAGAGCCATCAAATTTTGACATGACTATGCAGTGTGTACGTAGTGTGTACACTAGTAAGATCATAAGCAGTGACAGAGACCTGGTTGCTTTGGTGTTCTATGGGACTGAGCAGAGTAAGAATCCAAGAAATTCCTTCAAGCATGTCTACGTCTACCACGACTTGGATTCACCTGGATCTCAGCTTGTGCTGGATATAGATAGACTGCTGGGTGAGAAAGGAGCACAGTTCGCTGAAAAAACCTTGGGCAGTGGAGAAACGTCCCTCGGAGAGGCTCTGTGGTGCTGCTCCAACCTTTACAGTGATATCAAATTGCGACTGTCACACAAGCGCCTGATGATCTTCACTTGTAGGGATGATCCTCACAGAGGAGACGGTGCTAAAGACAGACAGGCTCGGACAAAGGCTGCTGATCTTAAAGAAACGGGTGTGGTCATAGACTTGATGCACCTTACAAAGCCAGGAGGTTTTGATGTTTCCATATTCTTCTGTGACATTGTAAGCCCTCCAGAAGATGAAAGCGAGCTCGGCCTCCAGATTGAGCCATGCAGGAAACTAGAGGACTTACAGAAGAGAGTCAGAGCTAAAGAGTTAAAGAAAAGATCTCAAAGCAGGTTAACATTCTCTCTCGGAGAAGGAGTCAATCTGGCAGTTGGCGTGTACGTGTTGGCCAGGACTGCCACCAAACCTTCTGCTGTCAAGCTTCACAGAGATACTAACGAACCAGTGCGCACTAAAACCCGTTACTTCCATGCCCATAATGGGGGGATACTTTTGCCAAATGATATGAAGAGGGCGCAGGTTTATGGGAAGAAACAGATTGTGATGGAAAAGGATGAAGTGGATGAGATTAAAAAGTTTGATGATCCAAGTTTGATTCTGATGGGGTTTAAGCCCATGGACCGTCTCAAACTGCACCATCATATACGGCCTGCCCTCTTCATATACCCCGAGGAAGAGCAGATTTCAGGAAGCTCCTGTATGTTTACAGCTCTGCTTTTGAAGTgcagtgaaaaaaatgtatttgcgtTGTGCAGATACATTCCTCGTCGTAACACCCCTCCTCGGTTTGTGGCACTAGTTCCCCAGAGAGAAGAACTGGACCAGAGTCAAACCCAAGCAACACCTCCAGGCTTCCACGTGATATTTCTTCCCTTTGCTGATGACATACGCACAGTGGATGCTCACGTGGGTCCCACAGCCTCTGATGAGCAGGTGGACAAGATGAAAGAGATTGTGCACAAGCTCCGCTTTAAATACAAGAGCGATTCGTTCGAAAACCCAGTGCTACAACAGCACTACAGGAACCTGGAGGCTTTGGCTCTGAATATGCTTGAACCCGAGCCCATCGAGGATTTAACACTGCCCAAGGTACAAATGATGGATACTCGTCTTGGTTCACTGGCTCAACAGTTCAAAGATTTAGTCTATCCTTCTGATTATAACCCAGAAGGGAAGCCTGCGGCTAAACGCAAAACTGCTGAATCTGGTGGTGGTGCTGAAAAGAAGCCAAAAGTGGAGATGTCAGATGAAGAGCTGAAAAACCATGTGGCAAAGGGCACCTTGGGAAAACTCACAGTGCCTGTGCTAAAAGATGCATGCAAGCAGTTTGCAATACGTACAACAGGAACCAAAAAACAGGAGCTTATAGACGCCCTGACCATGCATCTCTCTAAATAAAATGTCCTTGCCCAtattttgggagaaaaaaaaaaccttgacaCCTTGATTACATACTTGTACatacaattaatacaaaatatttgtatttctttacaTTCTAAATGACTTTCCTGTCTACAGCAAAATTTCAGCATTGTGACTTGTCATAATGGATGTAATAAAAGCTTGAATCTTGTAGTTTT

Function

symbol description
xrcc6 Predicted to enable telomeric DNA binding activity. Predicted to contribute to double-stranded DNA binding activity. Acts upstream of or within response to ionizing radiation. Predicted to be located in nucleus. Predicted to be part of Ku70:Ku80 complex. Is expressed in head; nervous system; neural keel; post-vent region; and presumptive neural retina. Orthologous to human XRCC6 (X-ray repair cross complementing 6).

NR:

description
X-ray repair cross-complementing protein 5-like

GO:

id name namespace
GO:0006303 double-strand break repair via nonhomologous end joining biological_process
GO:0010212 response to ionizing radiation biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0000723 telomere maintenance biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0043564 Ku70 cellular_component
GO:0042162 telomeric DNA binding molecular_function
GO:0003684 damaged DNA binding molecular_function

KEGG:

id description
K10884 XRCC6, KU70, G22P1; ATP-dependent DNA helicase 2 subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253322.1 True 2182 mRNA 0.45 12 8738942 8743606

Neighbor

gene id symbol gene type direction distance location
josd1 josd1,LOC107660868,LOC107554019 coding downstream 694 8733817 ~ 8738248 (-)
cbx7b LOC107660863,LOC107734182,LOC107584093,LOC107554058,LOC107692056,LOC107709653 coding downstream 5953 8728809 ~ 8732989 (-)
l3mbtl2 LOC107734235,LOC107584094,LOC107663177,LOC107692058,LOC107709654,LOC107554057 coding downstream 33858 8698493 ~ 8705084 (-)
kctd17 kctd17,LOC107584096,LOC107734225,LOC107692061 coding downstream 56957 8668396 ~ 8681985 (-)
LOC122355697 phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 coding downstream 100059 8637411 ~ 8638883 (-)
mrtfab LOC107692050,LOC107734192,LOC107660860,LOC107584087,LOC107709647 coding upstream 38073 8781679 ~ 8808640 (-)
rgs9b rgs9b,LOC107660859,LOC107584086,LOC107734240,LOC107692097,LOC107709642,LOC108444257,LOC107554020 coding upstream 65476 8809082 ~ 8821062 (-)
LOC122355256 slc16a6a,LOC107554067,LOC107721990,LOC107692048 coding upstream 88476 8832082 ~ 8837257 (-)
snx11 snx11,LOC107734201,LOC107584079,LOC107660856,LOC106589286 coding upstream 101505 8845111 ~ 8852234 (-)
snf8 snf8,LOC107554070,LOC107692042,LOC107734219,LOC107584075,LOC107660854 coding upstream 126459 8870065 ~ 8872539 (-)
G86809 LOC107731413,LOC107584098,LOC107734194,LOC107663181 non-coding downstream 108735 8627094 ~ 8630207 (-)
G86798 NA non-coding downstream 109970 8597394 ~ 8628972 (-)
G86807 NA non-coding downstream 112613 8623297 ~ 8626329 (-)
G86775 NA non-coding downstream 200736 8535973 ~ 8538206 (-)
G86608 NA non-coding downstream 394333 8344336 ~ 8344609 (-)
G86848 gna13a,LOC107660858,LOC107584085,LOC107734232,LOC107554062,LOC107692049 non-coding upstream 78274 8821880 ~ 8823436 (-)
G86852 arsg,LOC107734203,LOC107660857 non-coding upstream 94745 8838351 ~ 8838612 (-)
G86853 NA non-coding upstream 97208 8840814 ~ 8841155 (-)
G86854 arsg,LOC107734203,LOC107660857,LOC107554066,LOC107692046 non-coding upstream 99781 8843387 ~ 8843774 (-)
G86856 NA non-coding upstream 109339 8852945 ~ 8853257 (-)
trnar-ccu_66 NA other downstream 51372 8687498 ~ 8687570 (-)
plbd1b LOC107578697 other downstream 51394 8682443 ~ 8687548 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other downstream 126497 8610552 ~ 8612445 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other downstream 225677 8511403 ~ 8513265 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other downstream 378950 8334404 ~ 8359992 (-)
LOC122355288 LOC107660874 other upstream 132011 8875617 ~ 8878131 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other upstream 568047 9311653 ~ 9939849 (-)
ormdl3 ormdl3,LOC107723636,LOC107657273,LOC107556587,LOC108273759,LOC102217224,LOC106521946,LOC102783025,LOC105936292,LOC107092838 other upstream 737953 9481559 ~ 9489312 (-)
cript cript,LOC107582781,LOC107728714 other upstream 2261400 11005006 ~ 11006954 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other upstream 2299282 11042888 ~ 11045889 (-)

Expression


Co-expression Network