eme1 (eme1,LOC107584393,LOC107723632,LOC107705828)


Basic Information

Item Value
gene id eme1
gene name eme1,LOC107584393,LOC107723632,LOC107705828
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9274365 ~ 9281289 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253326.1
CAAGGACGCGAGCGCCGCCATCTTGAATGACGTAAGCGTGACGCAGCCCACGCGTTCCCGTGATGCTTCAGAACCCGCGAACTGCAGAACTTGGCTGGCACGGCTGATCTCTGTATGACAGCATGACCTGCATCGGTAGACCTGGATTCATCTTAAGTGACAGTGACTCCAGTGATTCAGAGGAGCTGCCTGTGTTTGATTTCTCACAGTCGAAATCCAGACAGCCCAACTTGGTAGATTTAGACAGTTCAGACTCAGAAATGGCTCCTGTTGCTCATCCACTTTCATCTCTGGAGGTCCACGCCTCTGCTGGAGCTGCTAGAAGTGACATGTTGATGGTCAGTAGTGAcagtgaagaggaggaggaggccaTGATTCCCTTAGCTGTAagactgaaacaaaaacagcttgGTGTGGGTACAGCAGCCATCAGTGCAGAAGAGACCCGGGCTTCCAATATGGTTTCCAATGGATGTTCCCGCCTCTTAAATGTTCCAGAGCGTCATATCAACCACGAGACCCAGCCGGTGGAACGTAACAAAATCTGTAGCAATATAACGAGGCAGTGCAGCTCAAACAAGGACGCACCGTACCTCACAAAAGAACCTCCACCTGAAGCGGAGAATGGTGCTTACCTGGCCAAACGCAAGAAAAACCCAGCAGAAGTGGAGGCTGCCAGACAGGAAGCCCTGAGGAAAAGAGCAATGCGAGAGCATCAGCaggaagagaaggagagatTGAGGATGGAGAAGAAAGCCTTGGCTGATGCTGTGAAAGCCCTAAGGCCAGAGGAGTGCATCAAACACACGGTGGTGACGGTCGACCCGGGCCTACTGCAGCTGGAAGGTGGCGGCGCTCTCCTGACTTCCCTGCATGCCATGGGCTGCAACTGTGCCATAGAGAAGCAGTCTCTTCCTCGTAGTGTCACCTGGGCAAGACGCTCACCCTGCCCTCAGACTGGTGAGACGATGACCATTCCAGACTTAAATACTATAATACAAGTTCCTGTGGATGACTTTGTAACTATGATTAATAACTACTGCAAGaaGCAATGCAATAGTGTGTTGACAGAAAGTGGCATATCTCTGACCGCCTGGATCCAAGGACTTATGAAAAGAAACCCAGGCAGAACTCTCAGTCTGGTCGTGATTGACCTAGAGAAGTACTACAGAGGCCAAAATTCTAAATGTCAGAAGAAATATCGAGAGGCAGTGCTGGGCGAGGAGAAGAATGTGGGACTTCAGGGAGggcagaaaaagagaagaaagaaagacgatATCAATCAGCTTCCTGAGGTCTCGCGAGTGCAGGTGGAGGAGGCTTTGGTAGACCTGCAGCTGCAAACTGGGGTGCAGGTTCGCTTCCTCTCTACCTGGAAAGACTTCACTGATTATATTACCATGTTAACCAAAGCAGTAGCCGAGGCACCATTCAAGCGGGAGCGAGAGAAGACGGGATTCACGTTTTGTTTGGAGAGTGAGTGGGCAGGGGGTCAGAAGGTGGACCGCTCAGGGAACGGCCTTCTGCAAGTTTGGAAGAGACAAATACAGCAGCTGAACCGCGTCAGCCCTGATATGGCCAGTGCTATACTTAGTGCCTACCCCTCTCCTCGGCTTCTTGCTCAGGCATATGCACGGTGCAAATCAGAACATGAAAAAGTCGGTCTGCTGTCAGAAATACTTATTCGCCGTGGAGAAGGTGTGACATCTACAACCCGCAGAGTTGGTCCAGAGCTTTCCAaacgactctttcttttgatgaTCTCACATGATGCCCATCAGCCACTTGATTCTGCTGTATAGATTTCTCTTGTCTCCTTGTACACATAATGTTGTAGATATTTATTACCGTTCAGATTTTTTATTAGTTAGATTTTTGTCTAATGTTGCTATAAATTGTcacaattaaatgtttcttaaagtaCCTGAACCATTTTACTTTACCTTCATCAGAATTAGTTTTTCTAAAATGACTTCAGCCCAAACCTTTCCGTAGCTCTTTATACAACAGTGGGAGCCTTAAAAGTTAAACTTTTTCTGGAATGCTCTTTGAGTTTTTAAGTTCTCTTCACCCCAGCGGCAAATAACCTTGCATGACAGAAGCCTAAATGCAGTATAATGTTAAATTCTCAAATGCTACGCATGCACGGTATTTCTTGGATACATTTAAGACCGGTAGGTCAGACCCAAGTGGtttcatttagaatttattcACTTTATGTTATCCTTACATATTTTAGCAGCACTAGAGAGGGCACTGTTAATTGTAAAAGCAACAATTTCAGTTTTGgcttttttcctgtttaagGCACTACCGTGCTCCTTTCGGAACCAAAATGGCCCCTTGAGCACACCGTACTTACTGTCTAAAGACTGTAGAGGCTCATGGCTCATTTCCAGCACATTAGAGAATGGCACCTGACCAAGGAGTGTCGTGTTGCCTGAAACGAGCAGTGGGGTAACGAGCCGTTAAATGTGCTTAAGAGATGAGCTGCATGCTTCATCCCTGTCCCTGAAGGCAGTATTTCCTCTACAGTTTAAGGGATGGCATAACAAACTATGGCTAGTAGGTGTGTGCTTGTGCCGAAGGGAATTATACGAGCAGAATTATGGCAGCTTGAAAAGGGATCACCTTGGAGTGATTGTTTAGCTGAATAGTATGAAATCCAATTTTCGTGTACTCTGAACGCAGACCATAATAGCTTTTATGACCTAGAGTCTGCAGTACTAACATCTTCAGTGGCATGTGAATGGTTTAATGGggctttaatttccaaaaaGCAGTTGTAGGATAGTGTACAATGTACCTCAACTAACCTAAATGTTTTGGAGGACGAATAGTGTTCCATTTGCATCAAAATACGGATATCTATGTAAGAGCAAAGAGTCCGTATATCTTCAGCTGCAATGTGCATATATGAGTCATGACTACTCCACATGATAGATTGCCCCCTGTAAAGTATTTCTGTTCAGCGGAGTAGCAGTTTCTCATTTCTGGCGCACACAGGATTCTTCCTGCTCCTTGTTGGAGATTAATAAGGATTGGGAGTGGCGGTAGGTCAACGTCGGCCACCTTCACTCACAGTCAATAGAGTGGGAAGCAAAGCAGGGCTGTTAGTCACTGTCTTTCCCTGGATATTCTCAACTCGGCTCATCTCTTGGAAAAATGCGCATTCTTATCGGCCGCCACACAAGATGGAGTGCCACAGGCAGTCCTGTTTATGGTTTTGTAAGTTCGTTTTGTTCCAGTTACAGTTTTGTATTCTTGGCAGAGTGGGTGCACTTCCAATTTCTTGGGTTGTGTCACATTAATGCCACCTGTAGTATGCTGGCCGTTCTCTGACAGTGGCATAATAATAACATGTTTTCTCAGGCAAAGTGGTATGGCAACAAGACAAAGCCTCTGATATCCTTCCATTGCATTCTCAGTGTGTTTTGCTTTGGCGCTCGGTGAATCACGATCCACTCGTGAGCCACTTGCTAAAACGACAAGAGAGAATGTCAAAGACTCCAACAATCTATTTCAGAGCATGAGTAGGCCGGCCACTGTGGTATTGGTTTCTTTGCCACCAGCGTTCAATCAATGTTTCCTGcttctctttaaaaataaatcattatatggCT

Function

symbol description
eme1 Predicted to enable DNA binding activity and endonuclease activity. Predicted to be involved in DNA metabolic process and mitotic intra-S DNA damage checkpoint signaling. Predicted to act upstream of or within DNA recombination and DNA repair. Predicted to be located in nucleus. Predicted to be part of Holliday junction resolvase complex. Orthologous to human EME1 (essential meiotic structure-specific endonuclease 1).

NR:

description
crossover junction endonuclease EME1

GO:

id name namespace
GO:0004518 nuclease activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K10882 EME1, MMS4; crossover junction endonuclease EME1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253326.1 True 3623 mRNA 0.46 9 9274365 9281289

Neighbor

gene id symbol gene type direction distance location
nme2a nme2a,LOC107574626,LOC107558983,LOC107660852,LOC107734222 coding downstream 327547 8943111 ~ 8946818 (-)
snf8 snf8,LOC107554070,LOC107692042,LOC107734219,LOC107584075,LOC107660854 coding downstream 401826 8870065 ~ 8872539 (-)
snx11 snx11,LOC107734201,LOC107584079,LOC107660856,LOC106589286 coding downstream 422131 8845111 ~ 8852234 (-)
LOC122355256 slc16a6a,LOC107554067,LOC107721990,LOC107692048 coding downstream 437108 8832082 ~ 8837257 (-)
rgs9b rgs9b,LOC107660859,LOC107584086,LOC107734240,LOC107692097,LOC107709642,LOC108444257,LOC107554020 coding downstream 453303 8809082 ~ 8821062 (-)
nsfb nsfb,LOC107657277,LOC107665886,LOC108430134,LOC108273757 coding upstream 242997 9524286 ~ 9543828 (-)
arhgef15b LOC107657276,LOC107733470,LOC107665871,LOC107723635,LOC107556583,LOC107584389 coding upstream 263978 9545267 ~ 9558906 (-)
neurl4 neurl4,LOC107733461,LOC107665870,LOC107738962,LOC107657283 coding upstream 294943 9576232 ~ 9594931 (-)
shbg LOC107733473,LOC107657285,LOC107584386,LOC107665891,LOC107738963 coding upstream 315006 9596295 ~ 9600672 (-)
zbtb4 LOC107733450,LOC107657284,LOC107584385,LOC107738964,LOC107556580,LOC107665872 coding upstream 320222 9601511 ~ 9615541 (-)
G86861 LOC107734218,LOC107660853,LOC107584076 non-coding downstream 405303 8867892 ~ 8869062 (-)
G86862 NA non-coding downstream 410102 8863441 ~ 8864263 (-)
G86858 NA non-coding downstream 418255 8855673 ~ 8856110 (-)
G86857 NA non-coding downstream 418824 8855329 ~ 8855541 (-)
G86856 NA non-coding downstream 421108 8852945 ~ 8853257 (-)
G86916 NA non-coding upstream 18390 9299679 ~ 9299899 (-)
G87019 NA non-coding upstream 292345 9573634 ~ 9574525 (-)
G87034 NA non-coding upstream 350755 9632044 ~ 9635117 (-)
G87055 NA non-coding upstream 481813 9763102 ~ 9767238 (-)
G87104 NA non-coding upstream 1079588 10360877 ~ 10361414 (-)
LOC122355288 LOC107660874 other downstream 396234 8875617 ~ 8878131 (-)
trnar-ccu_66 NA other downstream 586795 8687498 ~ 8687570 (-)
plbd1b LOC107578697 other downstream 586817 8682443 ~ 8687548 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other downstream 661920 8610552 ~ 8612445 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other downstream 761100 8511403 ~ 8513265 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other upstream 30364 9311653 ~ 9939849 (-)
ormdl3 ormdl3,LOC107723636,LOC107657273,LOC107556587,LOC108273759,LOC102217224,LOC106521946,LOC102783025,LOC105936292,LOC107092838 other upstream 200270 9481559 ~ 9489312 (-)
cript cript,LOC107582781,LOC107728714 other upstream 1723717 11005006 ~ 11006954 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other upstream 1761599 11042888 ~ 11045889 (-)
G87489 NA other upstream 2040134 11321423 ~ 11322603 (-)

Expression


Co-expression Network