calcoco2 (LOC107734218,LOC107584076,LOC107660853)


Basic Information

Item Value
gene id calcoco2
gene name LOC107734218,LOC107584076,LOC107660853
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8863320 ~ 8869790 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253330.1
ATACACGGGAATCCCCAGTTTCAATAGCGCGCCGTTCTACTCAAAGAACTACATCTCCCAGATCGTGTTTACTATTTTGCTCCCATTTATAGCAACTGCAGCGTATCTGACCGCCTGTTCAACGCGGTCTGGACTGCGACAGAAGGAGGTTcagGGTATTGTGTTCCACATAAACACCGGGATGAACGACGGAACGGAGGAAGAGACGGCCCCAGTTATAATGGAGACCTCGTCGTACTCGCAGGTAGTTTTCAACGATGTTCCTCCATCATATCCGCCAAACACCGCAGTTACTTGCCGCTACACCCTGACCGGTGATGTGCTGCCCAACCCCAGGGACTGGATCGGTATCTATAAGGTTGGTTGGAGTTCAGCACAGAAGTATTATACCTATGTATGGGTGGAACCTTGGCTGGACCAGGTCGGCCCTGAACCGCTTGTTCAGCAAGTGGTTTTCTCAGAGAGCTACCTGCCCAAGGATGATGGGGAGTTTTACCAGTTCTGCTATGTGGACAGCTTCGGTCACGTCAAAGGAGCCAGCACCccattttgctttcaaaacccaGCGGAAGCAAGCCTTGGCAGCAGCTTGGAGAAGGACCTGTTGGTCATAACAACACAGGAGCAGGCAGAAAAGATGGAGAAGGAGAAAGAACGCTTTGTGAGAGAGATcgagtttttaaaagaaacaaatgtgaTCTTGAAAAAAGAGTTGGGTGAAAGACTGCATGAGATCTGCCGTCTCAAGAGCTGCATAGAGGATACAAAGTCAAAGGATAAACCAGAATCTCTAAACCAGAAGCTGCCAGATGTGCCCAGTTTTAATTCCACCGAAGAGTCACTGATATCTCTGCAAGAAAAGTATGACGGAGCTCTTCAGAAGATCCAATTCCTTAAGAAAGAAAGGACAGAGTTACAGAAAGAGCTTGAATTCAAGAATGGGGAAGTCCTCAGtctAAACACCTTGCTAAAAGAAACAGAGCAAAGTTACAACAAAGTACAGGACCAAGTCAAGCTACTACAGGTGGATGTGCAAAGCAGcaggaaagactacgagaagttgCAGACCGATATCCAGGAGCTCAGGAGGAAAAAGACTTTAGAAGACCGGAGGGCTGAAAACAAAGCATTACAAACATACTTGTCAGAGCACGAAGAACAAATGAAGGAAGAAAACAGTAAAACTGTACAGATTCAAGCCCTGCTCGGTCAGCTGACGGAGGCCAGAGGGCTGCTTCGCAGTGAGGTGCAAAGTTGCAAAGAAGCCTGTAAACGTGCAGAAACGGCTGAGCAGGAATCGAAGGAACTGAAAAGGAAGCTGGAGGAGATGACCTTGAAACGGACTGAGAATGAGGAAACCAATCAAATCCAGGCTCAGCTTCAGCAGGCGCAACACAAAATTTATGAAATGGCCGAGACGTCGAGATTGGACAGAGAGAAGCTTGAGGAAAGGAATGAGgAACTGCAAGCTGAAGTAAATAAGCTTAAAAGGGCACTGTTTGACTACCAGGTTGCATCTGTGGCTGCAGTTTCTAATCAAATATCCAACCCTCAAAGCCCACCGGCGTCCGTAGAGAAAACGAATTTCCTCGACTCTCATTTCTATGAGAACATTGATGACTTGACAGCGAATCCTTCCGATCCAGAAGTACAGaTCAGGGTGTGCCAACACTGTCAGGAGGTCTTTCCTGGAATCAGCGAGGATGAGCTGGCAGAACATGAGCTGGCTCACAAAGTGTGTCCGCTCTGCACTCTGATCTGTGATGATATGGGACAGCAGGAGTTTGAAGATCACGTCTACAGTCATGAGGATTAATCAGTTCTGCTTTCTTTATCTGACGTGCTGTCTTTGGGATATTAGTGGCACTGTTTAAAGTACTGAACAGTCCAGGATGTTGTAGGTATGCAGCGCTTTTGATTCTGATTAGCTGTTATCTAAAGGAGggattttttattatcagtatcTAATGATTGTAgtatcactgaaaaaaatggaatCGAATAGccaataataacataataaaaagaaataaattgcacttatataataacaacaacaacaactggcATGGTCTTATTTACCCAAACTTTTTTCCTGCTTAAAAAGGCATTggaataataaacatattgtGAGAAATGTGA

Function

NR:

description
calcium-binding and coiled-coil domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253330.1 True 2142 mRNA 0.45 14 8863320 8869790

Neighbor

gene id symbol gene type direction distance location
stx4 LOC107734241,LOC107660855,LOC107584077 coding upstream 900 8856333 ~ 8862420 (+)
si:dkey-220f10.4 si:dkey-220f10.4,LOC107584081,LOC107660871,LOC107554063,LOC107692044,LOC108444253,LOC108273760 coding upstream 7201 8843600 ~ 8856119 (+)
LOC122355269 amz2 coding upstream 32499 8827577 ~ 8830821 (+)
gna13a gna13a,LOC107660858,LOC107584085,LOC107734232,LOC107554062,LOC107692049 coding upstream 36049 8821857 ~ 8827271 (+)
shisa8b shisa8b,LOC107734242,LOC107584089,LOC107660861,LOC107692051,LOC107709648,LOC107554029 coding upstream 82516 8755240 ~ 8780804 (+)
LOC122355280 LOC107584204,LOC107734177,LOC107692095,LOC107554071,LOC107721984,LOC107660865 coding downstream 9580 8879370 ~ 8884634 (+)
st6galnac1.1 st6galnac1.1,LOC107734167,LOC107584073,LOC107660870,LOC107692094,LOC107721986,LOC107577723 coding downstream 14990 8884780 ~ 8890206 (+)
st6galnac1.2 NA coding downstream 21315 8891105 ~ 8895681 (+)
caskin2 LOC107660851,LOC107734197,LOC107721987,LOC107692038,LOC564253,LOC101882765 coding downstream 26427 8896217 ~ 8943033 (+)
ca10a ca10,ca10a,LOC107584395,LOC103361575 coding downstream 249139 9118929 ~ 9241492 (+)
G86713 LOC107578697 non-coding upstream 177203 8682389 ~ 8686117 (+)
G86593 NA non-coding upstream 518352 8344669 ~ 8344968 (+)
G86577 NA non-coding upstream 571258 8291843 ~ 8292062 (+)
LOC122355856 NA non-coding upstream 656572 8204145 ~ 8206748 (+)
G86536 NA non-coding upstream 659177 8203583 ~ 8204143 (+)
G86756 NA non-coding downstream 3537 8873327 ~ 8873545 (+)
G86758 NA non-coding downstream 5325 8875115 ~ 8875455 (+)
G86943 NA non-coding downstream 611795 9481585 ~ 9487179 (+)
G86959 LOC107657285,LOC107733473,LOC107738963,LOC107665891 non-coding downstream 726503 9596293 ~ 9600682 (+)
LOC122355291 NA non-coding downstream 740503 9610293 ~ 9616636 (+)
arsg arsg,LOC107734203,LOC107660857,LOC107692046,LOC107554066 other upstream 10871 8836448 ~ 8852449 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other upstream 665416 8195964 ~ 8197904 (+)
msrb1b msrb1b,LOC100705913 other upstream 756540 8105148 ~ 8106780 (+)
LOC122355675 NA other upstream 1019237 7815823 ~ 7844083 (+)
G86143 NA other upstream 1555091 7307924 ~ 7308229 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other downstream 415873 9285663 ~ 9306831 (+)
mfsd8 mfsd8,LOC107738985,LOC107556570 other downstream 786879 9656669 ~ 9664139 (+)
LOC122355274 shisa9a,LOC107584108,LOC107734251,LOC107669237,LOC107554036,LOC107731434,LOC107692077 other downstream 887457 9757247 ~ 9767228 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other downstream 995024 9864814 ~ 9874515 (+)
LOC122355255 NA other downstream 1013243 9883033 ~ 9899001 (+)

Expression


Co-expression Network