zcchc4 (zcchc4,LOC107657290,LOC107733462,LOC107738986)


Basic Information

Item Value
gene id zcchc4
gene name zcchc4,LOC107657290,LOC107733462,LOC107738986
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9662758 ~ 9671280 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253343.1
TTTAGATGGCAGCCTCCTGTCAAACACGCGTGTGTTTTGATTCTCACATGTAAGGTTTCTCGGCAAAATACTGGCAAAATGGGTAAAATACTGGATGATGTCGTGGATGGTGGCGGAATAGAAGTGATCATTCAGCATGAAAAGGACAAAACGGCACCGCGGTGTCCACATGGACCAGCTCTGTTGTTCGAGAAAACTGGAAATGGTGAGGACAAGGGAAGGAGATTTTATGCGTGTTCTGCTTGTCGGGACAGAAAAGACTGCAACTTTTTTCAGTGGGCAGACGAAAAGATATCTGAGGCAAGGATGCTTGCCAGAGAACAACAGAACCGTTCCAAGATGCCTCTTTTCAGTCATCAGGAACACTGCTCCAGATTTAGAGAGTTTGTTGGTCTCCCACTGGAGCAGAGAAGGTTCTGTGTGGACTGTCAGCTGCTGATTCTTCCCGGGGAATGGGCGAATCATGCCAAACACAAGGCACTTTCTGAGGACATCACAGTGCAGCAATTGAAAAGGCCCAGTCTACTTCTGTGTCCGCTAGATAACAAGAAGAGTCATGCACAGTATCTGTTTGCGGATCGGAGCTGTCATTTTCTTCTGGATATGCTCTTGGGGTTAGGTTTCCAGAAAATTCTCTGTGTCGGGACACCACGATTACATGAGTTGATCAAGTTACTAAATACGGAGGGCAAGAGTCCTGCGATGAAGAGTTTATTGCTGGATATTGATTACAGGTATTGCCAGTTTTATGGGCAGGAAGAGTTCTGCCAGTATAATATGTTCAACCATCACTTTTTTGAtgatgagGAAGCTCTCATGTTTTTTCAAGGCTTTCTGCGTGAGGAGGAAGGAGCCAAGGTAGCCATGATAACAGACCCCCCATTCGGAGGCCTAGTGAAGCCGCTAGCCAACAGCTTCTCTCAGATGGCAATCACCtggaaaaatctgaataaaaTATGCGATGAAGGTCAGATGCCAATGATATGGATTTTCCCATACTTTGAATCCCGTATCCTGGAGTGTTTTCCCTCCTTCTCTATGCTGGATTACCAGGTTGATTATGATAATCATCCTCTATATAAACATGGAAAGACAGGCCGTAAGCAGTCACCTGTTCGCCTTTTCACGAATCTGAGCCCTAAAGATATCATTCTACCAGAGGATGAAGGTTACAGATTTTGCGGTGTTTGTGAGAGGCATGTGTCAGCAGGAAACAAACACTGCCCAAAGTGTGACAAATGCCCATCTAAGGATGGGCGAGAATGGAGGCACTGTGATGAATGTGGACGATGTGTGAAGCCTTCGTGGCGTCATTGTTCCTCATGTGGTCACTGCGCTCTCCCCGATCACCCTTGTGGTCCGAGCCAAACTGGATGTTTCAACTGCGGCAGCCAAAAACACAAACTTAGAGCTTGTCCTAAGAAACACAATAAACGAATGACTGTGCCAGGTGGTCATGCTGCTCCAGGCCTGTTAAAACACATTGCTGACAAATTCACAACtaagaagaagaggaaaagaaCGGTTACTTGAGCTTGTTCACAGTGGATTTGTGACTGCTGAAAACTGCATCATGATCAGAAAAAGTGAGCTCAGAGAGTGTGAAATGGGTTATTGATGTACAAGAAGGTTGTTGTGTAAGTACATAGTTGTCTTCTTGCATTCTGTTTTTGTCACAAGCTCATCCTACACTACAACCTTCCCAGTACAATAGACACGTTGTGTGAACAAACCATCCACGGGCTGGAATAACATTTCAAAGAAGCTTTGTTCCATCTTATGTGACGATCTGTGGATAAAATGTTTGAATACAACCACTGAAATGGATGTGACGGACAAAAATTATTTCTTGTTGAAAcatatcatttttaatgcatttaaagaaacttgagcaaaaaaaaaagctggaaaGCATGTCATGcctcactttttttaaaaacattaaaggaacGATTTATTGCCATTTCTCAGGAAATGTTGTGCTTTAACtcaaaaaacagaacaaaagctGGATTTAAAATACAGTGGTCTTGCAGCTTATAATCACCAAAAACTCAAGTGATTCTCGGCACCCTGTGTGCTTTTTAAGCTTAgtgttattaaaaagaaaagaaacttcAA

Function

symbol description
zcchc4 Predicted to enable rRNA (adenine-N6-)-methyltransferase activity. Predicted to be involved in rRNA methylation. Predicted to act upstream of or within methylation. Predicted to be located in nucleus. Predicted to be active in cytoplasm and nucleolus. Orthologous to human ZCCHC4 (zinc finger CCHC-type containing 4).

NR:

description
PREDICTED: zinc finger CCHC domain-containing protein 4-like

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K25177 ZCCHC4; rRNA N6-adenosine-methyltransferase ZCCHC4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253343.1 True 2121 mRNA 0.43 15 9662758 9671280

Neighbor

gene id symbol gene type direction distance location
zbtb4 LOC107733450,LOC107657284,LOC107584385,LOC107738964,LOC107556580,LOC107665872 coding downstream 47217 9601511 ~ 9615541 (-)
shbg LOC107733473,LOC107657285,LOC107584386,LOC107665891,LOC107738963 coding downstream 62086 9596295 ~ 9600672 (-)
neurl4 neurl4,LOC107733461,LOC107665870,LOC107738962,LOC107657283 coding downstream 67827 9576232 ~ 9594931 (-)
arhgef15b LOC107657276,LOC107733470,LOC107665871,LOC107723635,LOC107556583,LOC107584389 coding downstream 103852 9545267 ~ 9558906 (-)
nsfb nsfb,LOC107657277,LOC107665886,LOC108430134,LOC108273757 coding downstream 118930 9524286 ~ 9543828 (-)
LOC122355243 LOC107734216,LOC107669223,LOC107584111,LOC107692080,LOC107554034 coding upstream 41784 9713064 ~ 9734340 (-)
LOC122355289 ercc4,LOC107734247,LOC107669240,LOC107692079 coding upstream 63257 9734537 ~ 9740528 (-)
LOC122355272 cpped1,LOC107584109,LOC107669238,LOC107554009 coding upstream 72112 9743392 ~ 9756047 (-)
LOC122355287 fam20cb,fam20c,LOC107734234,LOC107699871,LOC107669229,LOC107731385,LOC108432010 coding upstream 116745 9788025 ~ 9805510 (-)
LOC122355804 nrg3b,LOC107566665,LOC107573948,LOC107678479,LOC107689960 coding upstream 467158 10138438 ~ 10144729 (-)
G87034 NA non-coding downstream 27641 9632044 ~ 9635117 (-)
G87019 NA non-coding downstream 88233 9573634 ~ 9574525 (-)
G86916 NA non-coding downstream 362859 9299679 ~ 9299899 (-)
G86861 LOC107734218,LOC107660853,LOC107584076 non-coding downstream 793696 8867892 ~ 8869062 (-)
G86862 NA non-coding downstream 798495 8863441 ~ 8864263 (-)
G87055 NA non-coding upstream 91822 9763102 ~ 9767238 (-)
G87104 NA non-coding upstream 689597 10360877 ~ 10361414 (-)
LOC122355705 nrg3b,LOC107678479,LOC108426474,LOC107689960,LOC108273971,LOC107566665,LOC107387893 non-coding upstream 738059 10409339 ~ 10444778 (-)
G87125 svila,svil,LOC107584371 non-coding upstream 907474 10578754 ~ 10582536 (-)
G87164 NA non-coding upstream 933952 10605232 ~ 10606019 (-)
ormdl3 ormdl3,LOC107723636,LOC107657273,LOC107556587,LOC108273759,LOC102217224,LOC106521946,LOC102783025,LOC105936292,LOC107092838 other downstream 173446 9481559 ~ 9489312 (-)
LOC122355288 LOC107660874 other downstream 784627 8875617 ~ 8878131 (-)
trnar-ccu_66 NA other downstream 975188 8687498 ~ 8687570 (-)
plbd1b LOC107578697 other downstream 975210 8682443 ~ 8687548 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other downstream 1050313 8610552 ~ 8612445 (-)
cript cript,LOC107582781,LOC107728714 other upstream 1333726 11005006 ~ 11006954 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other upstream 1371608 11042888 ~ 11045889 (-)
G87489 NA other upstream 1650143 11321423 ~ 11322603 (-)
G87569 NA other upstream 2161599 11832879 ~ 11835612 (-)
G87608 NA other upstream 2277260 11948540 ~ 11951155 (-)

Expression


Co-expression Network