si:dkey-219e21.2 (LOC107556575,LOC107738991,LOC107665865,LOC107733449,LOC107657266,LOC107584401)


Basic Information

Item Value
gene id si:dkey-219e21.2
gene name LOC107556575,LOC107738991,LOC107665865,LOC107733449,LOC107657266,LOC107584401
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9648751 ~ 9653386 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253344.1
AATAATTCGGGTCCAAAGTTTAGATGATGCAGACGATCAGTTAAAACGGGGGCAAAGAGAGCACCGGCCTTCAGTTTTCACCGGACACCCTGAGCGCTCACCTGCCTCCCCAACACTTCATCATGGGTGAAAAGGCGAACACTCTGAAAAGCATCCTGAAGGACAGCAGTATGGCTCGTAACATGCCCCAGAAGCAGAGTAACTCTGTCGGGGTTGTGCGCTGGACACTATCAGAGACAGATATTCAGGTCCACAGTTCTGCTCCCACCAGCCCCTTCAAGAACAGCAGCGGCTTTTCTACCCGTGCACAGCAAAGGCAGCGCCAGCAAGGCCTGAATGATCTCCGGAGTTTGGATGAGTGCATCAGATTCATAAACCACTGGAAGCAACAGGTGGCACAAGTTTGCAAGAATGAGGATGATCCCGGAGAAGGGTGCAGCAGTGAGACGGAGCGGCAGATAGACCCCAGAACTGAGCGCAGTCTTGAAGAGTGTCGCAAGCTTATTCTGCAGTGGGCCAGTGAACTTCAAAGCGTCGACAAGCTGTCTAAAAACCATTCATGGATAAAGGAGAGGATTGacgaagaggaggaagaaggcACAAAGGAGGATAAAGATCAGACTGATGTGGTGCAGAAGAAGATCACAAAGTGGGCCAAAGAGATACAGAGTGTGTCAGAGAGCTCTGGAATGGTGGGAGATGAACTGGCACGGCTTTTGCGTCTCCTGGgactgaagaagaagaagctgatTTCCCTCATGCCACTGCTGGAGTTCATCACTTGGAGTTTGCTGAAAGAAGACAGCGAGggCATGGTTCCTCATTTATGGCTTTCAGCTAAGCAGCGCACCTGGAAAGCTGgcATGCAACGATACATCCCTAATTCAgTCTGGAACTGGATTGTCAGTGCAGGAGCTGACGTAACTCTTGATCCCGTgaccagccaatcttggctgcaGCTCTCTGATGACCACAAGAAGGTCCAGGAGGGCCTAAAAGAAGCCAATCTGCCTTACAGCCCTCAGCGATTCGACTGCTTGCCCTGCGTTTTAGGCTGGGAGGGCTACATGAACGGCCGCCATTACTGGGAAGTGGAATTTGCCAACAATGGCTATTGGAAAGTTGGAGTGACGACTGCTTCCTCAAAAAGGCATGGCCGCTTTCCAATGAATCCCTCTACTGGTTACTGGGTCCTGTGGCGCAGCACACGTCAGTTTTTTGCATGCACCAATCCAGAAACAACACTGCCGCTGCTGCTGGTGCCCCAAAGAATGGGAATATACATCGATTACGAGGAGGGGCAGATTACCTTCTACAATGCAGAGAACAAATCACACATATACACCTTTACGGGACACTTTCGTGAGAAGCTGTACCCTTTCTTTGCTTTGCTGGATGGCAGGGGCATTATAACAGTGTGGTCTCCTAAAGACCACAGGCGCGTTTAACAACAGAGCAGGTTTGAAAGATCACCTTTCATTCTGTCCTTCTGTTTGAACATTCACACTAACAATTGATTCACtgggaccaaaaaaaaaaaatgaagctaGTCCTAATTGCAAACTTTCTATTTGAATCGATCAACGCTGTTGTGGGCTGGACCTGCTCAAAGAGAGCTATTAAAACTACAAAGGAAGGATGTCAATTATTTCTTCAAAATGATTGCTAGACTTACGTTtctctttgttcatttatatagtaattataaaaatgtatctatgCTTGTCTACTTTCGTGTATGCAAGTTTCATGTATGTGTTTTGACACAAATATTTAATGCGTTATCTCTGTTCGTCCTGCAACCATCAATAAGATAACCaacttatatttattgtatCACTGTTTATGTGTGAATAACGTCTATTCAAATGCaatctttctatttttatagTAGCGCTGGTTGATTATAcgtatgtattaataaaactaattaccTGACAACAGGTCACCattgaatgtaatatttatttgacagttcaacttttattaaaaacttacttttcatttta

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM39-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253344.1 True 2009 mRNA 0.45 11 9648751 9653386

Neighbor

gene id symbol gene type direction distance location
capgb capgb,LOC107733451,LOC107657288,LOC107665882,LOC107556576,LOC108430072 coding upstream 3990 9636473 ~ 9644761 (+)
polr2a polr2a,LOC107733452,LOC107584383,LOC107556578,LOC107738966 coding upstream 13634 9622803 ~ 9635117 (+)
hdlbpb hdlbpb,LOC107733459,LOC107657280,LOC107584388,LOC108430121,LOC108273755 coding upstream 73031 9559680 ~ 9575720 (+)
wnt3 wnt3,LOC107584390,LOC107556586,LOC107723638,LOC107665892,LOC108273758,LOC100707095 coding upstream 127089 9498576 ~ 9521662 (+)
mrpl27 mrpl27,LOC107657270,LOC107665862,LOC107584394 coding upstream 365671 9281191 ~ 9283080 (+)
si:dkey-219e21.4 LOC107657292,LOC107733464,LOC107584381,LOC107665876,LOC107738992,LOC107556571 coding downstream 11966 9665352 ~ 9669102 (+)
LOC122355279 cdca9,LOC107733465,LOC107657294,LOC107584382 coding downstream 18135 9671521 ~ 9673314 (+)
LOC122355282 shisa9b,LOC107596862,LOC107550297,LOC107703332,LOC107674610,LOC107709140 coding downstream 120986 9774372 ~ 9780670 (+)
LOC122355261 NA coding downstream 224230 9877616 ~ 9881012 (+)
jcada si:ch211-203c7.2,LOC107686368,LOC107749373,LOC107584373,LOC107657479,LOC107738977,LOC107549409 coding downstream 854457 10507843 ~ 10516992 (+)
G86981 NA non-coding upstream 26399 9619682 ~ 9622352 (+)
LOC122355291 NA non-coding upstream 32115 9610293 ~ 9616636 (+)
G86959 LOC107657285,LOC107733473,LOC107738963,LOC107665891 non-coding upstream 48069 9596293 ~ 9600682 (+)
G86943 NA non-coding upstream 161572 9481585 ~ 9487179 (+)
G86758 NA non-coding upstream 773296 8875115 ~ 8875455 (+)
G86984 NA non-coding downstream 1573 9654959 ~ 9655277 (+)
G87094 NA non-coding downstream 306352 9959738 ~ 9959969 (+)
G87095 NA non-coding downstream 307261 9960647 ~ 9960958 (+)
LOC122355662 NA non-coding downstream 425082 10078468 ~ 10098941 (+)
G87181 NA non-coding downstream 1236032 10889418 ~ 10889625 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other upstream 341920 9285663 ~ 9306831 (+)
arsg arsg,LOC107734203,LOC107660857,LOC107692046,LOC107554066 other upstream 796302 8836448 ~ 8852449 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other upstream 1450847 8195964 ~ 8197904 (+)
msrb1b msrb1b,LOC100705913 other upstream 1541971 8105148 ~ 8106780 (+)
LOC122355675 NA other upstream 1804668 7815823 ~ 7844083 (+)
mfsd8 mfsd8,LOC107738985,LOC107556570 other downstream 3283 9656669 ~ 9664139 (+)
LOC122355274 shisa9a,LOC107584108,LOC107734251,LOC107669237,LOC107554036,LOC107731434,LOC107692077 other downstream 103861 9757247 ~ 9767228 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other downstream 211428 9864814 ~ 9874515 (+)
LOC122355255 NA other downstream 229647 9883033 ~ 9899001 (+)
LOC122355192 opn4b,LOC107552747,LOC107739286,LOC107568552,LOC107582762,LOC107700131 other downstream 828106 10481492 ~ 10496277 (+)

Expression


Co-expression Network