wnt3 (wnt3,LOC107584390,LOC107556586,LOC107723638,LOC107665892,LOC108273758,LOC100707095)


Basic Information

Item Value
gene id wnt3
gene name wnt3,LOC107584390,LOC107556586,LOC107723638,LOC107665892,LOC108273758,LOC100707095
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9498576 ~ 9521662 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253359.1
TCAGAGGACGAGTAGGAgcgtgtgtgcgagtgtgtgaaAGAGACACTTACTCTCCTAACTACTGggacacacacactttcctcACCCAACTCAAAGAAGCAGCaaaccctggagaattttttatttatttatttttgccttcaTTTAAACCCCAAAATTGCTAATTATTCTCTCAAGCATCCATCTTTTTCCACCTTAAGACTTGCCTGCTGGGACTTAATTTTCAGCCCCTCTCTAGGAATTCTATGTACTGATCAATAGACAATTTCCATCCACACAAGACATACCTCATGGATTTGTACCTGGTTGGATATCTCATGTGCATGTGGTTGTCCAGCTCTCGGGTGCTTGGAGGCTATCCCATCTGGTGGTCCCTGGCCCTTGGGCAGCAGTACTCATCCCTAGGCTCCCAACCTATCCTGTGTGGCTCCATACCTGGTCTGGTGCCAAAACAGCTGCGCTTCTGCCGCAATTACATCGAGATCATGCCCAGTGTAGCAGAGGGAGTCAAACTGGGAATCCAGGAGTGCCAGCATCAGTTCCGAGGCCGCAGGTGGAACTGCACCACTATCAAGGACAATCTAGCAATATTTGGACCTGTGCTTGATAAAGCCACAAGAGAGTCTGCATTTGTTCACGCCATTGCCTCCGCTGGAGTGGCGTTTGCAGTGACCCGTTCATGCGCGGAGGGGACCTCCACAATGTGCGGCTGCGACTCCCATCATAAAGGCCCGCCGGGAGAGGGATGGAAGTGGGGTGGCTGCAGTGAAGATGCAGAGTTTGGGGTTCTGGTGTCTCGAGAGTTTGCAGACGCTCGTGAGAACCGACCAGATGCTCGGAGTGCCATGAACAGACACAACAACGAGGCAGGACGGATGACCATCCTGGAAAACATGCACCTGCGCTGTAAGTGCCATGGACTGTCAGGCAGCTGTGAAGTAAAGACCTGCTGGTGGGCTCAGCCTGACTTCAGGCTGTTGGGGGATTACCTAAAAGACAAGTACGACAGTGCCTCAGAGATGGTGGTGGAGAAACACCGGGAGTCCAGAGGCTGGGTGGAAACACTACGGGCCAAATACGCCTTCTTCAAGCACCCCACAGAACGAGACCTGGTGTACTACGAGGGATCGCCCAACTTCTGTGAGCCCAACCCGGAGACGGGCTCGTTTGGCACCCGGGACCGCGTCTGCAACGTGTCGTCGCACGGCATCGAGGGCTGCGACTTGTTATGCTGTGGCCGTGGCCATAACACACGGACAGAAAAGCGCAAGGAGAAATGCCACTGCATCTTCCACTGGTGCTGCTACGTCAGCTGCCAGGAGTGCGTGAGGGTCTACGACGTGCACACGTGTAAATAAGTGCAGGAAGAAAAGGACTAGtggacaaagagagagaaggaatgGGAGAGACTGACAACACACAACAAGATAGCGGCACTTCTGTGGTAGAACCCTTTACTAATGTGCCCTTTTTGATCTACACGCCCCAAAAGATGCCTATGGTGAGCATCATGGTTACTACTGCCATTCCTCTCACTTTTTTTTGCGGCACGCATTACATctgcaaaagaacaaaatgcCTTGTTATCATTCAGTCTTCTTTATCTGTAACACCATCTCTCTGATCATCTCACCCTGCCGCCCAAGGGCCGAAACAGGATATGTTCAAATACAACCAATGACACCGGGCAGACAAGAGGAGGGGGAAAGGAACGACGAGAAAATCTCGGTTAACTACTGAACGCTGGGTCTTGAAATATGCCCTGCTATACTACTGAATCCAATGAGAAGCCCACGTTTTTCCTCATGATTTCCCAATCATCTTGTACACTCCTAGCACATTCCCTATAATCGTATATGTTCAAATCGTGGAACATATTGCTGTTCGCTACATATAAAAACGTAATTTCTTTATATACGGCAGTTTGGAGGGATGCAATTGATACATTAGCATAGGGGCGGTGCAAACAGGAAAATGCATTATGGGTACCTTccgatttttttaaaaaaaggattttttgcAGAACATGTACATGCAAAGTCATCGGTGATTCTTCTGGATGAGTGCAGGACAGCTGGTGAAATGCATGACGGCAGAATGCAACGACACACACTGGGCTCACGTGCACCCGACCAGTAAAATTTGCACTTACAAAACTACTAATGACTATACTAATTCTAGAGATTACggtgattattttttaacatattctTTTTGATAAAGCTCCTCGTATATGA

Function

symbol description
wnt3 Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within cloaca development and thalamus development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including basal plate midbrain region; brain; midbrain hindbrain boundary neural tube; posterior neural tube; and presumptive diencephalon. Human ortholog(s) of this gene implicated in tetraamelia syndrome 1. Orthologous to human WNT3 (Wnt family member 3).

NR:

description
PREDICTED: proto-oncogene Wnt-3

GO:

id name namespace
GO:0021794 thalamus development biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005615 extracellular space cellular_component
GO:0005109 frizzled binding molecular_function

KEGG:

id description
K00312 WNT3; wingless-type MMTV integration site family, member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253359.1 True 2237 mRNA 0.49 4 9498576 9521662

Neighbor

gene id symbol gene type direction distance location
mrpl27 mrpl27,LOC107657270,LOC107665862,LOC107584394 coding upstream 215496 9281191 ~ 9283080 (+)
ca10a ca10,ca10a,LOC107584395,LOC103361575 coding upstream 257084 9118929 ~ 9241492 (+)
caskin2 LOC107660851,LOC107734197,LOC107721987,LOC107692038,LOC564253,LOC101882765 coding upstream 555543 8896217 ~ 8943033 (+)
st6galnac1.2 NA coding upstream 602895 8891105 ~ 8895681 (+)
st6galnac1.1 st6galnac1.1,LOC107734167,LOC107584073,LOC107660870,LOC107692094,LOC107721986,LOC107577723 coding upstream 608370 8884780 ~ 8890206 (+)
hdlbpb hdlbpb,LOC107733459,LOC107657280,LOC107584388,LOC108430121,LOC108273755 coding downstream 38018 9559680 ~ 9575720 (+)
polr2a polr2a,LOC107733452,LOC107584383,LOC107556578,LOC107738966 coding downstream 101141 9622803 ~ 9635117 (+)
capgb capgb,LOC107733451,LOC107657288,LOC107665882,LOC107556576,LOC108430072 coding downstream 114811 9636473 ~ 9644761 (+)
si:dkey-219e21.2 LOC107556575,LOC107738991,LOC107665865,LOC107733449,LOC107657266,LOC107584401 coding downstream 127089 9648751 ~ 9653386 (+)
si:dkey-219e21.4 LOC107657292,LOC107733464,LOC107584381,LOC107665876,LOC107738992,LOC107556571 coding downstream 143690 9665352 ~ 9669102 (+)
G86943 NA non-coding upstream 11397 9481585 ~ 9487179 (+)
G86758 NA non-coding upstream 623121 8875115 ~ 8875455 (+)
G86756 NA non-coding upstream 625031 8873327 ~ 8873545 (+)
G86713 LOC107578697 non-coding upstream 812459 8682389 ~ 8686117 (+)
G86593 NA non-coding upstream 1153608 8344669 ~ 8344968 (+)
G86959 LOC107657285,LOC107733473,LOC107738963,LOC107665891 non-coding downstream 74631 9596293 ~ 9600682 (+)
LOC122355291 NA non-coding downstream 88631 9610293 ~ 9616636 (+)
G86981 NA non-coding downstream 98020 9619682 ~ 9622352 (+)
G86984 NA non-coding downstream 133297 9654959 ~ 9655277 (+)
G87094 NA non-coding downstream 438076 9959738 ~ 9959969 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other upstream 191745 9285663 ~ 9306831 (+)
arsg arsg,LOC107734203,LOC107660857,LOC107692046,LOC107554066 other upstream 646127 8836448 ~ 8852449 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other upstream 1300672 8195964 ~ 8197904 (+)
msrb1b msrb1b,LOC100705913 other upstream 1391796 8105148 ~ 8106780 (+)
LOC122355675 NA other upstream 1654493 7815823 ~ 7844083 (+)
mfsd8 mfsd8,LOC107738985,LOC107556570 other downstream 135007 9656669 ~ 9664139 (+)
LOC122355274 shisa9a,LOC107584108,LOC107734251,LOC107669237,LOC107554036,LOC107731434,LOC107692077 other downstream 235585 9757247 ~ 9767228 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other downstream 343152 9864814 ~ 9874515 (+)
LOC122355255 NA other downstream 361371 9883033 ~ 9899001 (+)
LOC122355192 opn4b,LOC107552747,LOC107739286,LOC107568552,LOC107582762,LOC107700131 other downstream 959830 10481492 ~ 10496277 (+)

Expression


Co-expression Network