ca10a (ca10,ca10a,LOC107584395,LOC103361575)


Basic Information

Item Value
gene id ca10a
gene name ca10,ca10a,LOC107584395,LOC103361575
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9118929 ~ 9241492 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253365.1
TAGCGGGAGCGCGCACTCTGCTTTAGCGGTCCGCGCACCCGCAGCGCTCGTGGAAGTCAGGAAATCTGAATAGCTGTTTTTCAAAAACGTGTCGGGATACATTTGCCGTTGTTTTTCAGGTTTCTAAACTGTCGCAGGATATCAAAAGTAACAGGGTCAGATCGGCGGAGTCCAGTATCTTCGTGGCATAACGGGAGCGCTTTTGGAACGGGGAAAGAACGCCTAAGTCATTTTATGGAGGCTTGCGGGACACAGCGAAAAATTTCTTAAAGTGTTTGGCACCGCGGATATCAGTCCAGATCCCCCCCCTTCAGTTCGGAGCATAGTCTCGTTTGGATTTCAGCCTGTTTGAAATGTGGCGTTATGTGATCGAGATAAATGTGCTATGTGTGTGATTTGGAGAGGATCTTGTGGAAGGTGTCCAGTGGGAAAGAGACTGGGTGGACTCATCTGCAACTGATCCCCGTTTTCTGAGCGCAATGGACTTGGAATGAAGACAAAACATGGATATAATCTGGGAAATATTTATTATCCTTCAAGCCAATCTCATCGTTTGCACTTCAGCTCAGCCAAATCCACCCAAAATCCACGAGGGATGGTGGGCTTACAAAGAAGTTGTTCAGGGGAGCTTTGTTCCAGTACCATCGTTCTGGGGCCTTGTCAATTCAGCATGGAATCTGTGTTCTGTGGGGAAGAGACAGTCTCCAGTCAACATTGAGACGAGCCATATGATATTTGATCCCTTCTTGACACCACTGAGGCTCAACACTGGTGGACGAAAGGTGGGAGGGACTATGTACAACACCGGCCGCCATGTCTCACTCCGACTGGACAAAGAGCACCTGGTGAACATCTCTGGTGGACCAATGACATATAGCCATCGTCTTGAGGAGATCAGGTTACACTTTGGAAGCGAGGACGGACAGGGCTCTGAGCATCTCCTCAACGGCCAGGCCTTCTCTGGGGAGGTGCAGCTTATACATTACAACCATGAACTGTACACAAACTACACAGAAGCTGCTAAGAGTCCAAATGGCTTAGTGATAGTGTCTATATTTATGAAGATATCCGAGACTTCAAATTCCTTTCTGAATCGGATGTTGAACAGAGACACCATCACAAGAATAACGTATAAGAACGATGCGTACCTTCTCTCGGGGCTAAACATTGAGGAGGTTTATCCAGAGACGGCAAGTTTTATAACTTACGAAGGGTCTATGACAATCCCACCGTGCTATGAGACTGCAACATGGATTCTGATGAACAAGCCAATTTACGTCACAAAGATGCAGATGCACTCCATGCGACTGCTAAGTCAGAACCAGCCCTCGCAGATATTCCTCAGCATGAGTGACAACGTGCGCCCAGTACAGCCCCTGAACAATCGCTGTATCCGCACCAACATCAACTTCAGCATGCAGGGCAAGGATTGCCCCAACAACAGGGCACAGAAGTTACAGTACCGAGTGAACGAATGGCTGCTGAAATAGAGCCAGACTGCAGACCAGCCCAAGAACACTAACAACATGaaaaagaacaaagagaaaTGCTCATGGATCAGTACAGAATGAAGACTGACATATGTCCTGCCAGATACAGTCATGAtgttgtaaagaaaaaaaaaaaaaagaccaaaccCCAGCAAGAAGAGACTTTGCACCCATGGCAAAGAGATCCAGTTTCATACATCCAATCAAAACTAGTGACATACAGTTATAACTACGCAAATGTTTTGATACCTTTTTTTGGGAAAAAcactaacaaaaaatataacatttatttcataggCTCTTCACAAATGGAACTGAATGTTTTTAGCCTTTGTACATATGGACAACTTGCTACCAAACTGGGAAAAAGGGACAGGACATTGAACCACCCTACCAATACAGAAACATCCTTGAAACATAACTGCATTCTCAATCTTTATTCTCGCTCACGCTGTGGAGAGGAAGGAGAGGCAGCCTTGCAGGTTTATTGTCAAGactaaaaaaacatcataaagaTGACTATGGGGTGATGTCTGtggaaggaagaaaaaaaaagtgtcttggccttgtaaatataattattcatgctgaaaatgaatatgtaaagatacaaataaacattaaaaaaataatatcagagggaaaaataaatgaaaaaaagttgaatattTTACGCTTGGCGCACTTTCTGGAGCAGAGCTGatgcctttttttctgtttcattgtTTACAATGGTCATACACTGTGTTTGATTAATGTTATCGGCCCAATAAATGTGTTTGGAAAgttaa

Function

symbol description
ca10a Predicted to enable hydro-lyase activity. Acts upstream of or within swimming behavior. Is expressed in several structures, including cardiovascular system; eye; gill; integument; and pleuroperitoneal region. Orthologous to human CA10 (carbonic anhydrase 10).
ca10 Predicted to enable hydro-lyase activity. Predicted to be involved in one-carbon metabolic process.

NR:

description
carbonic anhydrase-related protein 10-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253365.1 True 2281 mRNA 0.44 10 9118929 9241492

Neighbor

gene id symbol gene type direction distance location
caskin2 LOC107660851,LOC107734197,LOC107721987,LOC107692038,LOC564253,LOC101882765 coding upstream 175896 8896217 ~ 8943033 (+)
st6galnac1.2 NA coding upstream 223248 8891105 ~ 8895681 (+)
st6galnac1.1 st6galnac1.1,LOC107734167,LOC107584073,LOC107660870,LOC107692094,LOC107721986,LOC107577723 coding upstream 228723 8884780 ~ 8890206 (+)
LOC122355280 LOC107584204,LOC107734177,LOC107692095,LOC107554071,LOC107721984,LOC107660865 coding upstream 234295 8879370 ~ 8884634 (+)
calcoco2 LOC107734218,LOC107584076,LOC107660853 coding upstream 249139 8863320 ~ 8869790 (+)
mrpl27 mrpl27,LOC107657270,LOC107665862,LOC107584394 coding downstream 39699 9281191 ~ 9283080 (+)
wnt3 wnt3,LOC107584390,LOC107556586,LOC107723638,LOC107665892,LOC108273758,LOC100707095 coding downstream 257084 9498576 ~ 9521662 (+)
hdlbpb hdlbpb,LOC107733459,LOC107657280,LOC107584388,LOC108430121,LOC108273755 coding downstream 318188 9559680 ~ 9575720 (+)
polr2a polr2a,LOC107733452,LOC107584383,LOC107556578,LOC107738966 coding downstream 381311 9622803 ~ 9635117 (+)
capgb capgb,LOC107733451,LOC107657288,LOC107665882,LOC107556576,LOC108430072 coding downstream 394981 9636473 ~ 9644761 (+)
G86758 NA non-coding upstream 243474 8875115 ~ 8875455 (+)
G86756 NA non-coding upstream 245384 8873327 ~ 8873545 (+)
G86713 LOC107578697 non-coding upstream 432812 8682389 ~ 8686117 (+)
G86593 NA non-coding upstream 773961 8344669 ~ 8344968 (+)
G86577 NA non-coding upstream 826867 8291843 ~ 8292062 (+)
G86943 NA non-coding downstream 240093 9481585 ~ 9487179 (+)
G86959 LOC107657285,LOC107733473,LOC107738963,LOC107665891 non-coding downstream 354801 9596293 ~ 9600682 (+)
LOC122355291 NA non-coding downstream 368801 9610293 ~ 9616636 (+)
G86981 NA non-coding downstream 378190 9619682 ~ 9622352 (+)
G86984 NA non-coding downstream 413467 9654959 ~ 9655277 (+)
arsg arsg,LOC107734203,LOC107660857,LOC107692046,LOC107554066 other upstream 266480 8836448 ~ 8852449 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other upstream 921025 8195964 ~ 8197904 (+)
msrb1b msrb1b,LOC100705913 other upstream 1012149 8105148 ~ 8106780 (+)
LOC122355675 NA other upstream 1274846 7815823 ~ 7844083 (+)
G86143 NA other upstream 1810700 7307924 ~ 7308229 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other downstream 44171 9285663 ~ 9306831 (+)
mfsd8 mfsd8,LOC107738985,LOC107556570 other downstream 415177 9656669 ~ 9664139 (+)
LOC122355274 shisa9a,LOC107584108,LOC107734251,LOC107669237,LOC107554036,LOC107731434,LOC107692077 other downstream 515755 9757247 ~ 9767228 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other downstream 623322 9864814 ~ 9874515 (+)
LOC122355255 NA other downstream 641541 9883033 ~ 9899001 (+)

Expression


Co-expression Network