stx4 (LOC107734241,LOC107660855,LOC107584077)


Basic Information

Item Value
gene id stx4
gene name LOC107734241,LOC107660855,LOC107584077
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8856333 ~ 8862420 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253368.1
agaagaagaaaacgaCAAATTCGTATGCGTCTACATCACCCCATTTTGATGTCAAAGTATAACTTAAGGTCATCCGCATGATCTTTATATCGCCGTTTATGCACCTCACGGCGTCCATCGACAGTCCGCTCTGAAAGTTATTTGTGGAAGTTGTCTGGCGTGAAATGTGACTTTGAATGGAAACTCCCTCTTTTCGGTTTTGAGTTTTGCGAGTTTGAGTCTGCAGACAGATGAGCTACGCCTCTTAAGACAGAAACTTTTAATCTGAGTTGGCTCTAAGATACATCGAAAATGCGGGACCGGACCAAAGAATTGGGCAATACCGTCCACACgtcagatgaagatgaagaaacCACAGCTCTCATGATAAAGCCCGGATCTGGGAGCTCCGCaaatgaagagaaagaaaatgaagctttctttaaaaagGTTCAGGAGATTCGAGAGGGACTTGAAACGATTAAAAAGAAGGTGTCGGAGTTGGAGAACAAACAGAAAACGGTGTTAGGAGTCGCACTTCCAGAAGAAAGTATGAAAAAGGAACTGCAGTCCCTCAGAGAAGACATCAAAGTCATGGCCAGCCAGATCCAAAGGAAGTTAAAAAGCATCGAACCTAAGAAAGCTGAAGGTGAAGACAAATATATTCCAATAAATATTAGAATGCGGAGAACCCAGCATGGTGTTTTGTCTCGTGAATTTCTGGAAGTGATGGGTCACTATAACACAATTCAAGCCCAATACAGAGACCGAAATGTGGAGAGGATACAAAGACAGCTCAAAATCACTGGTAACAATGTGACGGATGAAGAGCTGGAATCCATGCTTGAGAGTGGACAAACCGATGTTTTCACGCAAAATATTTTAAATGATGCTAAAGCTACCAGACAGGCTCTGAATGAGATTGAGTCACGGCATGATGAGATCATCAAGCTAGAGAAAAGTATTAAAGAGCTACATGATATGTTTCAGTACCTTGCAATGGAGGTTGAAGCACAGGGAGAAACGGTGGACCGGATTGAGGAGAATATTAAGAGTTCTCATAACTATGTGGAGAAGGCTGTTGCTGAAACATCTGCTGCTGTAGAAACTTCAAAGAAAGTGCGCAagaaaaaaatagggATTGCCATATGCCTTGCTTGTGTAATTCTTATAATAGTCATTACACTGATTGCCACGTACAGTTGAGggttttctttttattagatGACTTTTTGCCCATCAAGCAGTGGGTTTTGTCTTCCTAAACCGTCTTCATGAAGTCTCTCTAACAAACAACACGGCCGTTTGCAAACATGACCGTTATTGGTGTCCCAGCTGTTTTGTTAGCTACATTCgttgaaattttaaatagttGATCTGTTGTTTTAGCTGCTTTTTCGTACAAAGGACATGCATTCGATTTCCTGAAAAATGTCTCTGCTGCACCACTTGGACGTTTAAAAGTGACATGACAAAAATGGTTTGAATTTACTGGTTGCTTTCCTGACACTTTTTCCAAGACTTTATTTGCAACGCCAACACTAAAACATGGTCATATAATGTagatgaagggaaaaaaaatgctaacaAGATTTCTAATATATAATGCTTCCATTCGGAGAGACAAGCTCAAGAACTTGAGAGATGGGGTATTTGTCTTTGCCCTAATGTTTATAAGATGtcttttgtgttatttgttgTGATGTATCTTTTTGTAATGCCATTTCAAAGCTTGAAATtgctaaaatagcatttaagGTCATCTGTATATAACAACTAATTTTATACTCGGCTTTGCATTATAGTAACTGCCTTTCAAATACTACTTCTCTTGAACTCACGATGACATgttgcatatgtatatatattttaactaatttgtGCTCTGTCCCAAGTAAAGACATGCACTTTTAAGAACTGATTATGTACAGTTACTTGTTTAGTGCCTCAACCTTGTTGCCTTTTCTTGAGCAGTAATATATGGAGTGCCCACTGTGTGGCATTATAAATGTCAAGATCACCAAGAATACAATTGATTTGGTTTCAGTTTGCAGCCTTTAGACATGCTGccgcacatttttttttcttcattatgataaattgtcatttttaaataaagtacatattatata

Function

NR:

description
PREDICTED: syntaxin-4

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K13502 STX4; syntaxin 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253368.1 True 2111 mRNA 0.39 11 8856333 8862420

Neighbor

gene id symbol gene type direction distance location
si:dkey-220f10.4 si:dkey-220f10.4,LOC107584081,LOC107660871,LOC107554063,LOC107692044,LOC108444253,LOC108273760 coding upstream 214 8843600 ~ 8856119 (+)
LOC122355269 amz2 coding upstream 25512 8827577 ~ 8830821 (+)
gna13a gna13a,LOC107660858,LOC107584085,LOC107734232,LOC107554062,LOC107692049 coding upstream 29062 8821857 ~ 8827271 (+)
shisa8b shisa8b,LOC107734242,LOC107584089,LOC107660861,LOC107692051,LOC107709648,LOC107554029 coding upstream 75529 8755240 ~ 8780804 (+)
desi1b desi1b,LOC107734250,LOC107692098,LOC107660862,LOC107584090,LOC107554028 coding upstream 109254 8744261 ~ 8747079 (+)
calcoco2 LOC107734218,LOC107584076,LOC107660853 coding downstream 900 8863320 ~ 8869790 (+)
LOC122355280 LOC107584204,LOC107734177,LOC107692095,LOC107554071,LOC107721984,LOC107660865 coding downstream 16950 8879370 ~ 8884634 (+)
st6galnac1.1 st6galnac1.1,LOC107734167,LOC107584073,LOC107660870,LOC107692094,LOC107721986,LOC107577723 coding downstream 22360 8884780 ~ 8890206 (+)
st6galnac1.2 NA coding downstream 28685 8891105 ~ 8895681 (+)
caskin2 LOC107660851,LOC107734197,LOC107721987,LOC107692038,LOC564253,LOC101882765 coding downstream 33797 8896217 ~ 8943033 (+)
G86713 LOC107578697 non-coding upstream 170216 8682389 ~ 8686117 (+)
G86593 NA non-coding upstream 511365 8344669 ~ 8344968 (+)
G86577 NA non-coding upstream 564271 8291843 ~ 8292062 (+)
LOC122355856 NA non-coding upstream 649585 8204145 ~ 8206748 (+)
G86536 NA non-coding upstream 652190 8203583 ~ 8204143 (+)
G86756 NA non-coding downstream 10907 8873327 ~ 8873545 (+)
G86758 NA non-coding downstream 12695 8875115 ~ 8875455 (+)
G86943 NA non-coding downstream 619165 9481585 ~ 9487179 (+)
G86959 LOC107657285,LOC107733473,LOC107738963,LOC107665891 non-coding downstream 733873 9596293 ~ 9600682 (+)
LOC122355291 NA non-coding downstream 747873 9610293 ~ 9616636 (+)
arsg arsg,LOC107734203,LOC107660857,LOC107692046,LOC107554066 other upstream 3884 8836448 ~ 8852449 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other upstream 658429 8195964 ~ 8197904 (+)
msrb1b msrb1b,LOC100705913 other upstream 749553 8105148 ~ 8106780 (+)
LOC122355675 NA other upstream 1012250 7815823 ~ 7844083 (+)
G86143 NA other upstream 1548104 7307924 ~ 7308229 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other downstream 423243 9285663 ~ 9306831 (+)
mfsd8 mfsd8,LOC107738985,LOC107556570 other downstream 794249 9656669 ~ 9664139 (+)
LOC122355274 shisa9a,LOC107584108,LOC107734251,LOC107669237,LOC107554036,LOC107731434,LOC107692077 other downstream 894827 9757247 ~ 9767228 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other downstream 1002394 9864814 ~ 9874515 (+)
LOC122355255 NA other downstream 1020613 9883033 ~ 9899001 (+)

Expression


Co-expression Network