josd1 (josd1,LOC107660868,LOC107554019)


Basic Information

Item Value
gene id josd1
gene name josd1,LOC107660868,LOC107554019
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8733817 ~ 8738248 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253370.1
CAGCGGAAAGCCAATGACGTTTTGCGCATGCTCACGTTGAGCCAGAGAGCTGCAAGGAAAAAGTACAAGAGACAAAGGAATAAACAACTCAAGGAGCGGACGCGAAAACAAGAAGTTAAAGGAGCGAAAGCAGCCCAGCCTGTAACATATCGTATGCAGACAGAGCCAAGGTTATCTCTGCCGTTCTCACGGTGGTCCGCTATGGCAGTTGCCAGGGTCCTGCACTGCTGACCCATTTAGTCCCAGTCAGCTGTACAAGTCATGCTGTAAGTCTTTTCCACCCTGATGTCGGCCAAAATGGAAAGAACTGCTCTGCCCTAGTGGTTACTATGGTGCTTGGCAAGTCTGTGTGCAATAACAACATGAAGAGCGCAGAAAGAAGACACAATCAAGTCTGCTTCTGAGAAGATACATCGTTtccacttgttttttttgtttggttttttttttttcactgattcGCTGCAAGGTGCGCTGGCTCACCTTTCACTCCAGTAGCTACCTCCCCTCCCCTTGCCACTCATCCCGAGCAGCTGAGCGGTTGCTGTGGAGATGATAGTGGTGACATAGCAGCAGGAATGGGGAGTACTCCATGTTCTGGTAAGGGGAGGGGGGTCGGGGGGTTTCAGGAGCTGGGCTGTATGCCATGGAAGGTCAGCAAGCAGAAAGGAGAAACCGTCGTTGGACGGGGGTCCGAGCTGGAGGACAGGCCGTATGCTGGAACGCCCCCCACCTCGTCACAACCTACCGCCATTTATCACGAAAAGCAGCATCGGGAGCTGTGCGCTCTGCACGCCCTAAACAATGTCTTCCAGGACGGAGCGGCCTTCAGTCGTGATGCACTTCAGGACATCTACCAGAGgctgtCCCCTAGCACTTTGGTAACGCCCCACAAGAAAAACATGCTGGGAAATGGCAACTACGATGTGAACGTCATCATGGCTGCATTGCAGACACGTGGGTTTGAGGCTGTTTGGTGGGACAAGAGAAGGGATGTTGGCTGCATTGCACTGCCGAACGTCACAGGATTCATCTTGAATGTGCCATCCAATCTGCGCTGGGGGCCGCTGCGACTGCCCCTCAAGCGCCAACACTGGATTGGAGTTCGAGAAGTGGGAGGAGTCTATTATAACCTAGACTCCAAACTCCGCAGTCCTCATGCTATCGGAACAGCTGATGAACTGAGCTTCGAGGGAAGAACTGTGAACTCCTATTGGTTGTGTCAGAGGAGGTGGAAGTCCACCAGACGTGGAGGTCTGATAACTGATGaatgttttggatcattttttgttgttgttgttgttgttattttgtttttgttttggaggTTTCTCAAATTCATGCTCAGGAGGGAAATGTGAGGTTCAATCAGGGACCCATTTAAAGAGCAAATGGAGTTGCACTCAACTAGTCATGAAAGCACACTGCTCAGacttgtttacacacacacacacacacacacacacacacacacacaccgctggaCTCTTTCCATGGAGACTGAAGCAGCAAAGGACACACACAGGGATATCACAAGACAACAAAACACTACACAGAGAATTTTGTTTGGTATTTGGGAttctgatgcatttttttatacattgattatttcttttattttgtactgttttctGACTTGAAAGTGAGAGGTTATGGAATTATTAGTGATGTGTTCTCCTCGTGCATCACCTGTCATCCTCGACACTTCTCTCTttccatatgtttttttttttattctccccAGTGCATCCATGTGATCGTCTAAACTGTCCGCCACACATTAAAGGTCACCAAAAAAGCTATTCATTTGACCAACTGGATTTTAACACAGGGGTGCATATGTACTTATTTAGTGCATGTACTTGAAGATTTAGAGAAGGAACACCAGTAGCCCCTGCTTAACCGTTTCTTACATATTTAATGGCTTAGTGACAGATGAGATGTTTCCTGTGTATCACAGTACAGCATGGCACCACAGTAATTGGATGTTTTGTGTTAGTTTCCTATAACATATGTTACCAAAACGGTCACTTGTTAATCTCTTACCTTAAACTGTTGCTCTGGACACCCTTTTCTTGTTAAACAGTTAGACTTGTTAAATCCTAGACTACATGTAGGACAATAAACAGGTAAGTGTtggtagtaaaaaaaaaaaagttaaactgcCAAAAACTGTGTTGTTAATTGAAATGGTTGTATGTAAGAGTTAGAAAGGTTGAGGTCTCTGAAATTGTGCAAAGTTTATTCATCTTTGATTGATATTGGATTAACACGGCCTTAAACTGTTTACAGAGGGAGCAGATTTACACAAAGGGAAGTCTAATAATGCATCTCAGGTTATCTTCCGATCCAACTTGATTAAAGTTCACTTGTTAAACACCGATCTTCAACATATGATAGATAACACTTCAAATAGATTATAGACACTCGAATCAGATACTACAGCTTAAAAGGAACATTCCACATGTCCATACACAGGGTGCTTTGTAATTCTGTAGAGATGAATAGATTCCTTTGCCATGACAATCTAAATCCCCACAACCCGTTTTTCAGGGGGATGGGGACAACATGTGCTCATGCCAttgtttttcattcaaataaaatgcttatGATGGCACTTTATGTATGATGTAAAATGTGCTGTgacatcattaaaaatgtctttatatgta
>XM_043253371.1
GAAAGCCAATGACGTTTTGCGCATGCTCACGTTGAGCCAGAGAGCTGCAAGGAAAAAGTACAAGAGACAAAGGAATAAACAACTCAAGGAGCGGACGCGAAAACAAGAAGTTAAAGGAGCGAAAGCAGCCCAGCCTGTAACATATCGTATGCAGACAGAGCCAAGGTTATCTCTGCCGTTCTCACGGTGGTCCGCTATGGCAGTTGCCAGGGTCCTGCACTGCTGACCCATTTAGTCCCAGTCAGCTGTACAAGTCATGCTGTAAGTCTTTTCCACCCTGATGTCGGCCAAAATGGAAAGAACTGCTCTGCCCTAGTGGTTACTATGGTGCTTGGCAAGTCTGTGTGCAATAACAACATGAAGAGCGCAGAAAGAAGACACAATCAAGTCTGCTTCTGAGAAGATACATCGTTtccacttgttttttttgtttggttttttttttttcactgattcGCTGCAAGGTGCGCTGGCTCACCTTTCACTCCAGTAGCTACCTCCCCTCCCCTTGCCACTCATCCCGAGCAGCTGAGCGGTTGCTGTGGAGATGATAGTGGTGACATAGCAGCAGGAATGGGGAGTACTCCATGTTCTGGTAAGGGGAGGGGGGTCGGGGGGTTTCAGGAGCTGGGCTGTATGCCATGGAAGGTCAGCAAGCAGAAAGGAGAAACCGTCGTTGGACGGGGGTCCGAGCTGGAGGACAGGCCGTATGCTGGAACGCCCCCCACCTCGTCACAACCTACCGCCATTTATCACGAAAAGCAGCATCGGGAGCTGTGCGCTCTGCACGCCCTAAACAATGTCTTCCAGGACGGAGCGGCCTTCAGTCGTGATGCACTTCAGGACATCTACCAGAGgctgtCCCCTAGCACTTTGGTAACGCCCCACAAGAAAAACATGCTGGGAAATGGCAACTACGATGTGAACGTCATCATGGCTGCATTGCAGACACGTGGGTTTGAGGCTGTTTGGTGGGACAAGAGAAGGGATGTTGGCTGCATTGCACTGCCGAACGTCACAGGATTCATCTTGAATGTGCCATCCAATCTGCGCTGGGGGCCGCTGCGACTGCCCCTCAAGCGCCAACACTGGATTGGAGTTCGAGAAGTGGGAGGAGTCTATTATAACCTAGACTCCAAACTCCGCAGTCCTCATGCTATCGGAACAGCTGATGAACTGAGGAAGTTTTTGCGTCACCAGCTTCGAGGGAAGAACTGTGAACTCCTATTGGTTGTGTCAGAGGAGGTGGAAGTCCACCAGACGTGGAGGTCTGATAACTGATGaatgttttggatcattttttgttgttgttgttgttgttattttgtttttgttttggaggTTTCTCAAATTCATGCTCAGGAGGGAAATGTGAGGTTCAATCAGGGACCCATTTAAAGAGCAAATGGAGTTGCACTCAACTAGTCATGAAAGCACACTGCTCAGacttgtttacacacacacacacacacacacacacacacacacacaccgctggaCTCTTTCCATGGAGACTGAAGCAGCAAAGGACACACACAGGGATATCACAAGACAACAAAACACTACACAGAGAATTTTGTTTGGTATTTGGGAttctgatgcatttttttatacattgattatttcttttattttgtactgttttctGACTTGAAAGTGAGAGGTTATGGAATTATTAGTGATGTGTTCTCCTCGTGCATCACCTGTCATCCTCGACACTTCTCTCTttccatatgtttttttttttattctccccAGTGCATCCATGTGATCGTCTAAACTGTCCGCCACACATTAAAGGTCACCAAAAAAGCTATTCATTTGACCAACTGGATTTTAACACAGGGGTGCATATGTACTTATTTAGTGCATGTACTTGAAGATTTAGAGAAGGAACACCAGTAGCCCCTGCTTAACCGTTTCTTACATATTTAATGGCTTAGTGACAGATGAGATGTTTCCTGTGTATCACAGTACAGCATGGCACCACAGTAATTGGATGTTTTGTGTTAGTTTCCTATAACATATGTTACCAAAACGGTCACTTGTTAATCTCTTACCTTAAACTGTTGCTCTGGACACCCTTTTCTTGTTAAACAGTTAGACTTGTTAAATCCTAGACTACATGTAGGACAATAAACAGGTAAGTGTtggtagtaaaaaaaaaaaagttaaactgcCAAAAACTGTGTTGTTAATTGAAATGGTTGTATGTAAGAGTTAGAAAGGTTGAGGTCTCTGAAATTGTGCAAAGTTTATTCATCTTTGATTGATATTGGATTAACACGGCCTTAAACTGTTTACAGAGGGAGCAGATTTACACAAAGGGAAGTCTAATAATGCATCTCAGGTTATCTTCCGATCCAACTTGATTAAAGTTCACTTGTTAAACACCGATCTTCAACATATGATAGATAACACTTCAAATAGATTATAGACACTCGAATCAGATACTACAGCTTAAAAGGAACATTCCACATGTCCATACACAGGGTGCTTTGTAATTCTGTAGAGATGAATAGATTCCTTTGCCATGACAATCTAAATCCCCACAACCCGTTTTTCAGGGGGATGGGGACAACATGTGCTCATGCCAttgtttttcattcaaataaaatgcttatGATGGCACTTTATGTATGATGTAAAATGTGCTGTgacatcattaaaaatgtctttatatgta

Function

symbol description
josd1 Predicted to enable thiol-dependent deubiquitinase. Acts upstream of or within cranial skeletal system development. Orthologous to human JOSD1 (Josephin domain containing 1).

NR:

description
PREDICTED: josephin-1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008242 omega peptidase activity molecular_function

KEGG:

id description
K15235 JOSD; josephin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253370.1 False 2672 mRNA 0.44 5 8733817 8738248
XM_043253371.1 True 2686 mRNA 0.44 5 8733817 8738243

Neighbor

gene id symbol gene type direction distance location
cbx7b LOC107660863,LOC107734182,LOC107584093,LOC107554058,LOC107692056,LOC107709653 coding downstream 828 8728809 ~ 8732989 (-)
l3mbtl2 LOC107734235,LOC107584094,LOC107663177,LOC107692058,LOC107709654,LOC107554057 coding downstream 28733 8698493 ~ 8705084 (-)
kctd17 kctd17,LOC107584096,LOC107734225,LOC107692061 coding downstream 51832 8668396 ~ 8681985 (-)
LOC122355697 phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 coding downstream 94934 8637411 ~ 8638883 (-)
LOC122355698 phf5a,PHF5A,LOC107584099,LOC102780084,LOC106609350 coding downstream 96905 8634892 ~ 8636912 (-)
xrcc6 xrcc6,LOC107734244,LOC107584091,LOC107709651,LOC107554059 coding upstream 694 8738942 ~ 8743606 (-)
mrtfab LOC107692050,LOC107734192,LOC107660860,LOC107584087,LOC107709647 coding upstream 43431 8781679 ~ 8808640 (-)
rgs9b rgs9b,LOC107660859,LOC107584086,LOC107734240,LOC107692097,LOC107709642,LOC108444257,LOC107554020 coding upstream 70834 8809082 ~ 8821062 (-)
LOC122355256 slc16a6a,LOC107554067,LOC107721990,LOC107692048 coding upstream 93834 8832082 ~ 8837257 (-)
snx11 snx11,LOC107734201,LOC107584079,LOC107660856,LOC106589286 coding upstream 106863 8845111 ~ 8852234 (-)
G86809 LOC107731413,LOC107584098,LOC107734194,LOC107663181 non-coding downstream 103610 8627094 ~ 8630207 (-)
G86798 NA non-coding downstream 104845 8597394 ~ 8628972 (-)
G86807 NA non-coding downstream 107488 8623297 ~ 8626329 (-)
G86775 NA non-coding downstream 195611 8535973 ~ 8538206 (-)
G86608 NA non-coding downstream 389208 8344336 ~ 8344609 (-)
G86848 gna13a,LOC107660858,LOC107584085,LOC107734232,LOC107554062,LOC107692049 non-coding upstream 83632 8821880 ~ 8823436 (-)
G86852 arsg,LOC107734203,LOC107660857 non-coding upstream 100103 8838351 ~ 8838612 (-)
G86853 NA non-coding upstream 102566 8840814 ~ 8841155 (-)
G86854 arsg,LOC107734203,LOC107660857,LOC107554066,LOC107692046 non-coding upstream 105139 8843387 ~ 8843774 (-)
G86856 NA non-coding upstream 114697 8852945 ~ 8853257 (-)
trnar-ccu_66 NA other downstream 46247 8687498 ~ 8687570 (-)
plbd1b LOC107578697 other downstream 46269 8682443 ~ 8687548 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other downstream 121372 8610552 ~ 8612445 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other downstream 220552 8511403 ~ 8513265 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other downstream 373825 8334404 ~ 8359992 (-)
LOC122355288 LOC107660874 other upstream 137369 8875617 ~ 8878131 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other upstream 573405 9311653 ~ 9939849 (-)
ormdl3 ormdl3,LOC107723636,LOC107657273,LOC107556587,LOC108273759,LOC102217224,LOC106521946,LOC102783025,LOC105936292,LOC107092838 other upstream 743311 9481559 ~ 9489312 (-)
cript cript,LOC107582781,LOC107728714 other upstream 2266758 11005006 ~ 11006954 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other upstream 2304640 11042888 ~ 11045889 (-)

Expression


Co-expression Network