LOC122355280 (LOC107584204,LOC107734177,LOC107692095,LOC107554071,LOC107721984,LOC107660865)


Basic Information

Item Value
gene id LOC122355280
gene name LOC107584204,LOC107734177,LOC107692095,LOC107554071,LOC107721984,LOC107660865
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8879370 ~ 8884634 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253378.1
aaCTTCCGCTCTGAGTAGCTCCaaaaaatcagtgtaaaatTCTGCACGAACGTATCTGTGAGTCAGGTGTAGACAGAATTCGTGGCGGCCGCTTGTTGTTGaagtatgcatttattaaaacgtGCGCGTCAGAAGACAATAAAACGCCAACGTCAGCGTTAGTTAATAATAAACGCACGCTAAGAAAGTTATTTCATAGATAAGATGGATGGAACCtcagatttatttttccagGCGATGCTGTTTACGTTTCTTGCAATCACAGTAGCAGCGGTGTTTCTGGGAAGAAATAAAACTCCCGCGCCGTCGAAGTGCTCCCATCAAACTAGCGCCGTTGTGGAGGAGAGAGCCGGTCCAGATCCTGGAGGTTCCTCACAGTGTCGTGAAAAACGACATAATGAAAGCAATCAACAGGACGTTCAGCCGCAATCTAATGCGAAGAGCCTCAAAGCCAAAGATGAAACTAAACTCGCAAAGGATTCAAACTCGGataatgtggaaaaagtttcCCAGTCAGATTCTCCAGTTCCCACTTCCACTGGTCAGGAAGAGGATTCCTCGGAGTCTGGGATAAGGAATGCCCTGAGGGATTATGCTCACTCATCTGATGCTGAGGAAAAGCCTTTGAGATACATGGCTGGGATGCTGAGGACCTGCCAGCTTGAGAAGATGATGACCAGAGAAGAACtggaggaagagcagagGGTTCAGCGAGAGCAGTTAGCTGCCATCTTCCAGCTGCTCAGAGACAAACAAGACACGTTCGGTGAGGTGACAGAGAGTGATTTACAAGAACAGCTTAAACTTTACTCTATTTGACAGTGCGCTTATATGTAGATCATAGATGCAGAAAACCATTTTAAGGCGAGTCGAAATCAGTAACTTCAGTTTTTTACTCAGacgtgtatatatgtatttattcttCATTGTTATGCACAATAGAAGCAGTCACGGGTTTAGTAGACAATTCAGTAGTAGcctttttgcattctttttattCTCTTGCTGTAATGATTATGGCGCATGTCAGTTCAAATTCCTTGTTAAATGCAGTatgaattaaactgaaataaaatcctAAATCAGCTAAAATGA

Function

NR:

description
PREDICTED: matrix-remodeling-associated protein 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253378.1 True 1095 mRNA 0.43 4 8879370 8884634

Neighbor

gene id symbol gene type direction distance location
calcoco2 LOC107734218,LOC107584076,LOC107660853 coding upstream 9580 8863320 ~ 8869790 (+)
stx4 LOC107734241,LOC107660855,LOC107584077 coding upstream 16950 8856333 ~ 8862420 (+)
si:dkey-220f10.4 si:dkey-220f10.4,LOC107584081,LOC107660871,LOC107554063,LOC107692044,LOC108444253,LOC108273760 coding upstream 23251 8843600 ~ 8856119 (+)
LOC122355269 amz2 coding upstream 48549 8827577 ~ 8830821 (+)
gna13a gna13a,LOC107660858,LOC107584085,LOC107734232,LOC107554062,LOC107692049 coding upstream 52099 8821857 ~ 8827271 (+)
st6galnac1.1 st6galnac1.1,LOC107734167,LOC107584073,LOC107660870,LOC107692094,LOC107721986,LOC107577723 coding downstream 146 8884780 ~ 8890206 (+)
st6galnac1.2 NA coding downstream 6471 8891105 ~ 8895681 (+)
caskin2 LOC107660851,LOC107734197,LOC107721987,LOC107692038,LOC564253,LOC101882765 coding downstream 11583 8896217 ~ 8943033 (+)
ca10a ca10,ca10a,LOC107584395,LOC103361575 coding downstream 234295 9118929 ~ 9241492 (+)
mrpl27 mrpl27,LOC107657270,LOC107665862,LOC107584394 coding downstream 396557 9281191 ~ 9283080 (+)
G86758 NA non-coding upstream 3915 8875115 ~ 8875455 (+)
G86756 NA non-coding upstream 5825 8873327 ~ 8873545 (+)
G86713 LOC107578697 non-coding upstream 193253 8682389 ~ 8686117 (+)
G86593 NA non-coding upstream 534402 8344669 ~ 8344968 (+)
G86577 NA non-coding upstream 587308 8291843 ~ 8292062 (+)
G86943 NA non-coding downstream 596951 9481585 ~ 9487179 (+)
G86959 LOC107657285,LOC107733473,LOC107738963,LOC107665891 non-coding downstream 711659 9596293 ~ 9600682 (+)
LOC122355291 NA non-coding downstream 725659 9610293 ~ 9616636 (+)
G86981 NA non-coding downstream 735048 9619682 ~ 9622352 (+)
G86984 NA non-coding downstream 770325 9654959 ~ 9655277 (+)
arsg arsg,LOC107734203,LOC107660857,LOC107692046,LOC107554066 other upstream 26921 8836448 ~ 8852449 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other upstream 681466 8195964 ~ 8197904 (+)
msrb1b msrb1b,LOC100705913 other upstream 772590 8105148 ~ 8106780 (+)
LOC122355675 NA other upstream 1035287 7815823 ~ 7844083 (+)
G86143 NA other upstream 1571141 7307924 ~ 7308229 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other downstream 401029 9285663 ~ 9306831 (+)
mfsd8 mfsd8,LOC107738985,LOC107556570 other downstream 772035 9656669 ~ 9664139 (+)
LOC122355274 shisa9a,LOC107584108,LOC107734251,LOC107669237,LOC107554036,LOC107731434,LOC107692077 other downstream 872613 9757247 ~ 9767228 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other downstream 980180 9864814 ~ 9874515 (+)
LOC122355255 NA other downstream 998399 9883033 ~ 9899001 (+)

Expression


Co-expression Network