LOC122355282 (shisa9b,LOC107596862,LOC107550297,LOC107703332,LOC107674610,LOC107709140)


Basic Information

Item Value
gene id LOC122355282
gene name shisa9b,LOC107596862,LOC107550297,LOC107703332,LOC107674610,LOC107709140
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9774372 ~ 9780670 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253381.1
CCCAAATAAACAGCGTGGGACCTGGCCCATCTATGATGCAGGCTATGACACAATATCCTGCCCTTGGACAAGTACCTGTAGCCCACCCCTATGAACCATCTCAAACTGGCAAGGAGCTCAACAAGTATGCTTCGCTCAAGGCTGTGGCTGAAAAAGCGAACGAAAACTTCTACACTAACAGACGGCACCTAGCCGACCTGGCAGCAAAAGGCACTCTTCCCATGCACTCGGTGAGTCTGGAGCAGGAGCCCACCAACCCTTACAGCCCCGAGCTGCCCTGCCAAAAGCAGAACGGACACAAGTCCAAAAGCACCAAGGTCCACAGCTCCCACCCGCTAGCTTTTGGCTCAAACACCATCGCCAACCCCGGCATGCTGAAGGGCTGGGAGACCACAGAAACGCTGGGCCGTCGGCACACGTACGCCCCCAAGAAGCACAGCGCCACCGTGGAGCAAGTGAACGAGCTGACATCTGCCCACAGCCAGCACTATCTGCCACCACATCCGTACTTCGTCACCAACAGCAAGACTGAGGTGACCGTGTGAACGGGGCACAACGCCGGGTTTATCGAGCCCAGGCCTGAGAACGGAGAACGAGGATAATAAGGGAAGCCTGATGGAGGAAGAAGAGTGGATTAGGATCCCGTCCTGCTGGAAGGATTGAACCGAGCGGTCTGGCTCGAGATCTGCATGGCTGTATGTGTGCTGTTTGTCTTTGAGGAACAGGCGTGCATTGGCGACGTTCGCACGGGAAACCGTGGAACTCTTTCTGTGTCCATTCCGTCACAAACGAATAACCTGAGCTGTAGTGATGAGGCCATCAGTCAATGTGATGAGGACCCATTGAAACCCTAAGCAATCAATGCAATCAAACGTACTACTGTAGATGATGTTTCGCAACAGCTTGTGAGAAAGTCCCTTAAGAAACACTATCCTGTTTTTCTCAGAATCTTGTATATAACAGAATGGATGAAAAATGTCAAAGGCTTCCACGGATAATTAAAGGACATCGATCTGGAAGATGACAAATGACGTGAGGACAATCGTGTCTCAAGTTCTTCTCATCTCGTCACTCGAGATCTCCAGAGCGTGTGCACCAAAAACCTGTAGCAACGTAACACGCTGTATCCTGACAAACACTGGGCTTGTGCCTTTCCAACAGAAGAACTCATTATCTAGGAGCTCTTGTGCTTTTCAGCGAGCACATGGTGTTTCTTCAATAACaaagatgcataaaatataaacaaatctaTTGTTTACGGCTGTCATACTTCGgtatagaaaatgtttattgtcaGTGTTCTTAAATACACATTTCCCTTCTGTTTTCGCCATTTTTTTCGGATGTGTTCACACATTGTATGGCCCTATCTTTTAGTGCAACTGTAGACTGTAGACAAAGGAAGTACTCTAGGGTTAATGATAGACGttcattatttttcaatgttgtATGATAAAAGTGAATGGTAAATTCTGATAGCGAACAAGATTGTTACGACACTGCCATTGTTGCATTCCGAGTGTATTCGGTATCGAGAATGGATTCAGTAGTTTCTTTTGTCTTTAGCATCAAAATGTGAACCATTTCAATTAGCGTAAGGGCAAAAGGCTGCATTCAGTTTCCAAACCTGAACGTTTTGTCATCCACATCGAAATTATCCCAGGTATCTGGCTGTGAATAATGTGGGTCACATAAACTTTAATTGCTGTGAAACAAGTGGCTTTATCTCGGtactcttaaaatgtttttgacctAAACCGAGATCGTAAATTAGCAGGCTAACTCAttgtggaaataaaaatacatttacatatctAGTAGTACAGCTTTTTGCACGCTTACACGCTTTTTCACATTCTCAGTATTCACGATATAAGGGGTGATCACATTAAATTTTGTGTTTGTACTCTGCTGTTTTTAAGTTTGGTGAACTCTGGCTTGCAAATCTGTACAGCGATGTTTGATCATTAGTGGATGTAAATGTCACAGACTGACCTGCTGCTAGTGGCGCAGAAATtgcacacttcacctttaaggtAAActaatagttcaaccaaaaagaAATATCTGTTCAAATTTTACCCTCAGGGCATCCAAAATGCACAGTAAATGAGTTTGTtctttggagaaatttagctttATAACACTTGCTTATTAGTGGATCCTgatgtgcagtgaatgggtgccgtcagaatgagagtccaaacagctgagaaaaacgtcacaataatccacaagtcgtcaacttgtttctgtttttcacgTTAAATGATTGCCTGGAATCCTGCAGCTTacttatggattattgtgatgttttttatctGCTGTTTGGATGCATTAATGaccaagtgatgtaatgcaagatttctccaaatctgaacTCATTTACTCAAACTCATCTTACATATATGTTTATGACATTAGTTTCTATACTAATACGCAACGCAATGTAATGTGTAATTCAAAATATGGATGAAACACCtataaaagaaatcaataaaaagaacATTGGGTTAGAGTTTAACAAAATTTTCATAAAGTGAAAGGTTGGCACAGGCAACATCTCAGGACGAGCATTCAAGTGATATCTGACAGCTGGTGACATTTTAGGTGTGGTATGTCTTtaactgcacatttaaaaatgttttaaatttgtacAAATACTGGAACAGAGTGTCAGCTACACAAATCTCCTTTGCGAGTTttaattaccattttaaaatattgaaaatc

Function

symbol description
shisa9b Predicted to be involved in regulation of AMPA receptor activity and regulation of short-term neuronal synaptic plasticity. Predicted to be located in cell projection; plasma membrane; and synapse. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in dendritic spine membrane; postsynaptic density; and postsynaptic membrane. Orthologous to human SHISA9 (shisa family member 9).

NR:

description
PREDICTED: protein shisa-9B

GO:

id name namespace
GO:0048172 regulation of short-term neuronal synaptic plasticity biological_process
GO:0032591 dendritic spine membrane cellular_component
GO:0045202 synapse cellular_component
GO:0008328 ionotropic glutamate receptor complex cellular_component
GO:0030054 cell junction cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253381.1 True 2733 mRNA 0.42 2 9774372 9780670

Neighbor

gene id symbol gene type direction distance location
LOC122355279 cdca9,LOC107733465,LOC107657294,LOC107584382 coding upstream 101058 9671521 ~ 9673314 (+)
si:dkey-219e21.4 LOC107657292,LOC107733464,LOC107584381,LOC107665876,LOC107738992,LOC107556571 coding upstream 105270 9665352 ~ 9669102 (+)
si:dkey-219e21.2 LOC107556575,LOC107738991,LOC107665865,LOC107733449,LOC107657266,LOC107584401 coding upstream 120986 9648751 ~ 9653386 (+)
capgb capgb,LOC107733451,LOC107657288,LOC107665882,LOC107556576,LOC108430072 coding upstream 129611 9636473 ~ 9644761 (+)
polr2a polr2a,LOC107733452,LOC107584383,LOC107556578,LOC107738966 coding upstream 139255 9622803 ~ 9635117 (+)
LOC122355261 NA coding downstream 96946 9877616 ~ 9881012 (+)
jcada si:ch211-203c7.2,LOC107686368,LOC107749373,LOC107584373,LOC107657479,LOC107738977,LOC107549409 coding downstream 727173 10507843 ~ 10516992 (+)
psme4b psme4b,LOC107749369,LOC107584369,LOC107686372,LOC107657478,LOC108426507 coding downstream 804412 10585082 ~ 10609150 (+)
asb3 asb3,LOC107738981,LOC107549406,LOC107657482,LOC107749367,LOC107686373 coding downstream 833523 10614193 ~ 10620486 (+)
nrxn1a nrxn1a,LOC107673642,LOC107582788,LOC107749365 coding downstream 927228 10707898 ~ 10864445 (+)
G86984 NA non-coding upstream 119095 9654959 ~ 9655277 (+)
G86981 NA non-coding upstream 152020 9619682 ~ 9622352 (+)
LOC122355291 NA non-coding upstream 157736 9610293 ~ 9616636 (+)
G86959 LOC107657285,LOC107733473,LOC107738963,LOC107665891 non-coding upstream 173690 9596293 ~ 9600682 (+)
G86943 NA non-coding upstream 287193 9481585 ~ 9487179 (+)
G87094 NA non-coding downstream 179068 9959738 ~ 9959969 (+)
G87095 NA non-coding downstream 179977 9960647 ~ 9960958 (+)
LOC122355662 NA non-coding downstream 297798 10078468 ~ 10098941 (+)
G87181 NA non-coding downstream 1108748 10889418 ~ 10889625 (+)
LOC122355308 NA non-coding downstream 1135516 10916186 ~ 10939829 (+)
LOC122355274 shisa9a,LOC107584108,LOC107734251,LOC107669237,LOC107554036,LOC107731434,LOC107692077 other upstream 7144 9757247 ~ 9767228 (+)
mfsd8 mfsd8,LOC107738985,LOC107556570 other upstream 110233 9656669 ~ 9664139 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other upstream 467541 9285663 ~ 9306831 (+)
arsg arsg,LOC107734203,LOC107660857,LOC107692046,LOC107554066 other upstream 921923 8836448 ~ 8852449 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other upstream 1576468 8195964 ~ 8197904 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other downstream 84144 9864814 ~ 9874515 (+)
LOC122355255 NA other downstream 102363 9883033 ~ 9899001 (+)
LOC122355192 opn4b,LOC107552747,LOC107739286,LOC107568552,LOC107582762,LOC107700131 other downstream 700822 10481492 ~ 10496277 (+)
LOC122355633 rhoq other downstream 716755 10497425 ~ 10499698 (+)
svila LOC107686370,LOC107657481,LOC107584371,LOC107749370,LOC107549408 other downstream 742473 10523143 ~ 10582545 (+)

Expression


Co-expression Network