XLOC_006648 (ccdc85a)


Basic Information

Item Value
gene id XLOC_006648
gene name ccdc85a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 27000394 ~ 27038407 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012838
atcacaACGCACAGTTTGAGAGGCTGCTGTCACGCTCCATGCGCACAGACGCGACCAGCCGTGCGCCTTCCTAATGCGCCCGTACAGCGGCCACGGGTTCAGCATAACACTGAGCTGGACATGATGCTGACGGACAGATGGAAACAGACACAGTCTCTGCCGTAGAGACAGAGTGTCCATCCGTATTACGAGTCCGTGAGGAGGTGAAGTATTTGCCGGGTCTCTAGGGCTGCATCCCTGTCTTCAAAGTGGACAGCATGGGCAGAACAGCTATCGTTAAAATGATAGTATCAAAAATTCGATCCTAACGAGAAGGAATTTGCAGAAAAGGTGCCAACGGCGGATTTAATCGGCTTGTCGGTGATTTATTTCATAGCCTAGCAGTTCAAGAAGTTGGAAGGGAGGATGGAGAAGCCTAGTCAGCCTCAGCCGCATTCTGGTGGATCCAAAAGCACAGAAGGTCCCTCTGAGGACCTTTCCAAACTTACGGACGAGGAGCTTCTGAAATGGAGCAAGGAGGAGCTGGTTCGCCGGTTGCGCAGAGCCGAAGCCGAGAAGATGAGCGTAATAGTGGACCACAGCAATCTCATCCGAGAGGTAAATCGCAGGCTTCAGCAGCACCTCAACGAGATACGAGGACTTAAGGAGGTGAATCAGAAGCTGCAAGAGGACAACCAGGAGCTGCGGGACCTCTGCTGCTTTCTAGATGATGACCGGCAAAAAGGGAAGAAAGTGTCAAGGGAGTGGCAGCGCCTGGGCCGCTACAGCGCAGGGATTATGCGTAAGGAGGTGACACTATACCTGCAGAAACTGAAAGAGCTGGAGCAGAGGCAGGAGGAAGTAGTGAGGGAGAACCTAGAACTGAGAGAGCTGTGCCTAATGCTGGATGAGGAGAAGGGATCTGGAGGTACCAGCGGGTCAGTAGGCACCGGTGGACCGGCAGGCTGCAGGAATTCAATCGATAGTCAGAGCAGCTTGTCTCATGCCAGCGGTCCTGGGCCTGGTTTACTAAGGGATGTAGGTGATGGGAGCAGTACCTCCAGCGCGGGCAGCACTGACAGCCCTGACCATCTCACACATAAGCAGCAGCTGTTGGGTGGCCCGGTTGGAGGCAGTCCTGACCACCTACATAAGCCAGGCTCAGGGGAGGAGGCACCGGGTCCAGAGAATCCTAGCCGCAGGCATAGCACCAGCCAGGAGTATGCAGCACATACCTTTCCCCAAGTGTGCCGGTCCCGCTGTGGATCCTTCTCCAGTCCAGATCACAAGGGACTACGAGGTCTTAGTCCAGAGAAACTTGCCAAAAGGGGCAGTCCAGAGCAATTCTCTAAACACCTGTTGGTTTCTTCTCAACCGCCCGGCAGCCCGGACCTTTTTCAGAAGCACAGGGGTAGCATGGGGAGTGTGTGTGGGAGTCCAGAGCCCAAACAGATATTATcagggacaccggagcacctACAGAAGGGCCGTGTCATATCTGGGAGCCCTGAGTTGTTGAGGCATCAACACGTCAAGTTTGGCAGTCCCGGCCGAGAGGTGGTACAGAAGCGGCCGGGCGTAGAGGAGATGTCCCCTCATCACCGGAGCATCTATAGCGCTCTGATATCTGCTGGCTGTTGCACCAGCGCCTGTAGAAGTGTCAAGCTTTGGGACAGTTTTGATACCTCCTGACCAATGCCTTGACCGGATCCAGCGGTGGGACTGTGGCCCTGAAAGAGGATCCCTGTTGCTTTAATATGACTTGCACTGACAGAAATGAAGGGCGAAGATGGAAAAGTGTGATTGAAAGACAAGAACTTCTAGCAGCAGCCAGTGTCTCTCGTCGCCCTCCATCAACATGCTGGTTCCTGCTGGTCTCCTAAAACAACTTACAGCCCTGCACAAACCCAGGCCTGGGGGAGGAATTCCTTCTGATTTCAAAAGCTGGAACATGATTGCCAAAAGGATTTCTCACATGGGAGATTAAAACATCTCTCTTTTGCCAACAAAATAGACCTACCTCCTTTGAATGAAagcagacg
>TCONS_00012837
atcacaACGCACAGTTTGAGAGGCTGCTGTCACGCTCCATGCGCACAGACGCGACCAGCCGTGCGCCTTCCTAATGCGCCCGTACAGCGGCCACGGGTTCAGCATAACACTGAGCTGGACATGATGCTGACGGACAGATGGAAACAGACACAGTCTCTGCCGTAGAGACAGAGTGTCCATCCGTATTACGAGTCCGTGAGGAGGTGAAGTATTTGCCGGGTCTCTAGGGCTGCATCCCTGTCTTCAAAGTGGACAGCATGGGCAGAACAGCTATCGTTAAAATGATAGTATCAAAAATTCGATCCTAACGAGAAGGAATTTGCAGAAAAGGTGCCAACGGCGGATTTAATCGGCTTGTCGGTGATTTATTTCATAGCCTAGCAGTTCAAGAAGTTGGAAGGGAGGATGGAGAAGCCTAGTCAGCCTCAGCCGCATTCTGGTGGATCCAAAAGCACAGAAGGTCCCTCTGAGGACCTTTCCAAACTTACGGACGAGGAGCTTCTGAAATGGAGCAAGGAGGAGCTGGTTCGCCGGTTGCGCAGAGCCGAAGCCGAGAAGATGAGCGTAATAGTGGACCACAGCAATCTCATCCGAGAGGTAAATCGCAGGCTTCAGCAGCACCTCAACGAGATACGAGGACTTAAGGAGGTGAATCAGAAGCTGCAAGAGGACAACCAGGAGCTGCGGGACCTCTGCTGCTTTCTAGATGATGACCGGCAAAAAGGGAAGAAAGTGTCAAGGGAGTGGCAGCGCCTGGGCCGCTACAGCGCAGGGATTATGCGTAAGGAGGTGACACTATACCTGCAGAAACTGAAAGAGCTGGAGCAGAGGCAGGAGGAAGTAGTGAGGGAGAACCTAGAACTGAGAGAGCTGTGCCTAATGCTGGATGAGGAGAAGGGATCTGGAGGTACCAGCGGGTCAGTAGGCACCGGTGGACCGGCAGGCTGCAGGAATTCAATCGATAGTCAGAGCAGCTTGTCTCATGCCAGCGGTCCTGGGCCTGGTTTACTAAGGGATGTAGGTGATGGGAGCAGTACCTCCAGCGCGGGCAGCACTGACAGCCCTGACCATCTCACACATAAGCAGCAGCTGTTGGGTGGCCCGGTTGGAGGCAGTCCTGACCACCTACATAAGCCAGGCTCAGGGGAGGAGGCACCGGGTCCAGAGAATCCTAGCCGCAGGCATAGCACCAGCCAGGAGTATGCAGCACATACCTTTCCCCAAGTGTGCCGGTCCCGCTGTGGATCCTTCTCCAGTCCAGATCACAAGGGACTACGAGGTCTTAGTCCAGAGAAACTTGCCAAAAGGGGCAGTCCAGAGCAATTCTCTAAACACCTGTTGGTTTCTTCTCAACCGCCCGGCAGCCCGGACCTTTTTCAGAAGCACAGGGGTAGCATGGGGAGTGTGTGTGGGAGTCCAGAGCCCAAACAGATATTATcagggacaccggagcacctACAGAAGGGCCGTGTCATATCTGGGAGCCCTGAGTTGTTGAGGCATCAACACGTCAAGTTTGGCAGTCCCGGCCGAGAGGTGGTACAGAAGCGGCCGGGCGTAGAGGAGATGTCCCCTCATCACCGGAGCATCTATAGCGGTATGAACGGTGGGTCCGACTGGAGCCTGCTGTAGCACCCACAGTGACATACATGGAGTCCCATTTGAGCACACCACATACAGAGGGCATAGTCATCCTGGAGACAGCAAAGCCCTAATTTCCGGCCAGGCACTAAACCATCTCATTCAGCCAGCCATGTTCtgcatttagtttagttttgcttTGCTCAGTTCAGGAGATGCAATGGCCAGATAGTGAAGGAGCTTTAGTGCCTGGCTAGAGCAGAACATTTCATCTCTGGTAAATGTTAGTGGTGTCCAGTCTTGGTCCTCTCAGGCCATGCTTTTAGCAGGCTTTAACTGCCTCCTATCAATCAGCCTCAGTACCTGTGCCTCCGAAGCCATTTTTATGCACTGGAACCCATCTGAGGGAAcactttaatcaatcaatcaatcaaagacCAAAAAGCTCAGAGGCCCAACAAAAAGCCAGAAGACAGTGCTGCCCGGCAGGACCAGGAGTGGACACCATTGTATTTGCTTTATGCATGCAGCTCTGATATCTGCTGGCTGTTGCACCAGCGCCTGTAGAAGTGTCAAGCTTTGGGACAGTTTTGATACCTCCTGACCAATGCCTTGACCGGATCCAGCGGTGGGACTGTGGCCCTGAAAGAGGATCCCTGTTGCTTTAATATGACTTGCACTGACAGAAATGAAGGGCGAAGATGGAAAAGTGTGATTGAAAGACAAGAACTTCTAGCAGCAGCCAGTGTCTCTCGTCGCCCTCCATCAACATGCTGGTTCCTGCTGGTCTCCTAAAACAACTTACAGCCCTGCACAAACCCAGGCCTGGGGGAGGAATTCCTTCTGATTTCAAAAGCTGGAACATGATTGCCAAAAGGATTTCTCACATGGGAGATTAAAACATCTCTCTTTTGCCAACAAAATAGACCTACCTCCTTTGAATGAAagcagacg

Function

symbol description
ccdc85a Predicted to be located in adherens junction. Orthologous to human CCDC85A (coiled-coil domain containing 85A).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080220-55 Predicted to be located in adherens junction. Orthologous to human CCDC85A (coiled-coil domain containing 85A).

Ensembl:

ensembl_id ENSDARG00000039497

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012838 False 2021 mRNA 0.53 4 27000394 27038407
TCONS_00012837 True 2535 lncRNA 0.52 4 27000394 27038407

Neighbor

gene id symbol gene type direction distance location
XLOC_006647 vrk2 coding downstream 201150 26780004 ~ 26799244 (-)
XLOC_006644 NA coding downstream 296590 26009497 ~ 26703804 (-)
XLOC_006646 AL627132.1 coding downstream 433210 26567066 ~ 26567184 (-)
XLOC_006645 NA coding downstream 455578 26533354 ~ 26544816 (-)
XLOC_006643 NA coding downstream 1147083 25846532 ~ 25853311 (-)
XLOC_006649 NA coding upstream 188954 27227361 ~ 27227750 (-)
XLOC_006650 NA coding upstream 232931 27271338 ~ 27277709 (-)
XLOC_006651 ddx43 coding upstream 294249 27332656 ~ 27354033 (-)
XLOC_006652 kcnq5a coding upstream 340450 27378857 ~ 27621246 (-)
XLOC_006653 rims1a coding upstream 593519 27631926 ~ 27767443 (-)
XLOC_006471 BX537274.2 misc downstream 16735489 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 26174169 825904 ~ 826225 (-)
XLOC_006640 NA non-coding downstream 1221579 25776389 ~ 25778815 (-)
XLOC_006654 CR356236.2 non-coding upstream 651753 27690160 ~ 27690276 (-)
XLOC_006655 NA non-coding upstream 763008 27801415 ~ 27816641 (-)
XLOC_006658 CR392046.1 non-coding upstream 1141027 28179434 ~ 28179550 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_11091957_11093675 CCDC85A coding CI01000012 null 11091957 ~ 11093774 (+)