desi1b (desi1b,LOC107734250,LOC107692098,LOC107660862,LOC107584090,LOC107554028)


Basic Information

Item Value
gene id desi1b
gene name desi1b,LOC107734250,LOC107692098,LOC107660862,LOC107584090,LOC107554028
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8744261 ~ 8747079 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253382.1
TAAGCACATTTGTCATAACCGGTATCAAAATATCCCTGTGTCACTGTGACGGGGAGGACGTGAACGCTGCGTTGGATTTGTCAACAACCCgtggtttattatttttccgAAATCATTTAAAACGACAACGAATGCGTTCCTTGTACTAATATTTACTGCGATGATGGAAATGTGATCCGCCAATACACCGAAGTCTTGTTTTCCGAGTTCAGTCAGAGCCAGAAGCTCAAGCTAAGTTTCAGTTTGCTAGCTGTAGAGTTGCgtttttgtttgtaaacacGCGTTCGTCTAAAGCCGTAGCGATGGCTGATGGAAGTTCTTTCAACGTGAAGTTGCACATTTATGACCTGTCAAAAGGACTGGCCCGTCAGCTGAGTCCCTTGATGTTAGGAAAGCAGGTCGAGGGAATATGGCACACCTCTGTAGTGGTTTATGGGGAAGAGTTTTTCTTTGGAGGAGGAGGCATTATGAGCTGCTTTCCGGGTTGTACTATTCTAGGTATGCCTGATTCCACAGTGGACCTTGGAAACTCAGAAGTTCCTCGGGACCTTTTTCTGGAATATCTGTCTTCGCTCAGGGAGTCTACTTACAGACCTGAAAAATACCACCTCTTTGAACACAACTGTAACACCTTTAGCTCTGAGATCGCACAGTTTTTAACAGGAACTAGGATTCCTTCATACATCACTGACCTCCCATCTGAGGTGCTCTCTACACCTTTTGGACAAGCACTCCGTCCTTTACTCGAATCGGTCACCATCGCTCCATCGGGGAACAATGGCATGAATGGATATGGCCAAAGGTAGATCTGGCtgcttataaaaatgtattattacagcAGTCATGAAGCTTGTGTAACAGATAATAGTTTACTTAAATTTCACCTATTGTGCCtataaaaatagcattcatATAAAAGCAGGTCTTCCAGATTTTCTGCTCCGTGTACTCAGTTTTTCAGTCTCTTGAACCTTCCTTTAATGAACTGCGACGTCAACAGACCGGTTTGTCTGTATGGTTGAGTACAGGATTTATAATTCCAGCGGTGCAAACTATCAGTGGCAACCAAAACGTTAGCTGTAAAAACCCCCAtggatgtttaaaaatgtcaaatgtattttataaagcaCAAAGTAGCACAATAATTACTAGGCAACTATTTGCACTAAtctttacaaactttttttaatcaattaaatgtaCCAAAGCAAATTGTATCAGGATTCCCCTCGACAGTCTGTAGGTGTCTCTGTTCTACCTCCACATGTTACATGCTACGCTTTAAGAGGAACGGAGGCTAAGAATTAGGttgctaattattaaaaaataagctaTGGTGATTTAATACTGATTTGAGTAGTAACATTTAGAGTCTTTTGTTTATGTGTAAATTAATTAAGACAATTAGACCTTTACTGACTACTGTGTTTTCAGATATCTAACTCTGTCGCTCTTTCTTTAATCAGTCACTTCCTTTTATTGGCTCTTTTAGTGTTGCAAGTTAACTAAACTTTACCTTTACTCATTTATATCAATCCTAGAGTgccatgaatatatatatatatatatatatataatatatatatatatatgtagggTTTAAGGGGATCAGTGACGTCATAGGAAGCACAGCGTCACAcatgaatgttttataaaatgtgcagGTGTCACCAGCAATGAACCCCGTAGGAAAGTTGttgtatttttcaattattcaatCGTCTTTTTACATGTGTTACTCTGGTTAAGGTAAGATAggaatatagtaatataatgtataatgtggCTTTGGTGACAATAAGTAATTATTAAACTCGCAGTATTTAATTCATAGCTcattataattcatataattcatTGATGGTAAATGGTGTAAACGCTCTAAAGTCTATAGGACCAGTGTAATCGTAACAAACACATTAGCAATGAGACcgtgcatatatttttaaccgGTTCATAAGAATGCATGAAAGATTTGTAACATGATATTTTATGTATCAAAAACATTCCTTGTAATACTCTCacagtaagatttattttaggTTGAGGTTATGCTGCCTGATTTATCTGTGCTACTGTTTTTCAGTAAGTACTATTTAGAGCTCTTAATTTCCTGCCTCAAATAAACCtcatttctgtgtaaatgtgtgttaaacATCATTGTCTAAACAAATAAAGACGTTCTGAAAGTA

Function

symbol description
desi1b Predicted to enable hydrolase activity. Predicted to be involved in protein modification by small protein removal. Orthologous to human DESI1 (desumoylating isopeptidase 1).

NR:

description
PREDICTED: desumoylating isopeptidase 1-like

GO: NA

KEGG:

id description
K22762 DESI1, PPPDE2; desumoylating isopeptidase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253382.1 True 2192 mRNA 0.37 6 8744261 8747079

Neighbor

gene id symbol gene type direction distance location
ep300a LOC107692052,LOC107584175,LOC107709650,LOC107734181 coding upstream 16557 8706745 ~ 8727704 (+)
trnaq-cug_20 NA coding upstream 38930 8705260 ~ 8705331 (+)
chadlb chadl,chadlb coding upstream 45760 8693412 ~ 8698501 (+)
rangap1b rangap1b,LOC107554056,LOC107709655,LOC107692059,LOC107734248 coding upstream 51071 8687911 ~ 8693190 (+)
gucy2cb si:ch73-139e5.4,LOC107734164,LOC107584206,LOC107663179 coding upstream 75872 8654001 ~ 8668389 (+)
shisa8b shisa8b,LOC107734242,LOC107584089,LOC107660861,LOC107692051,LOC107709648,LOC107554029 coding downstream 8161 8755240 ~ 8780804 (+)
gna13a gna13a,LOC107660858,LOC107584085,LOC107734232,LOC107554062,LOC107692049 coding downstream 74778 8821857 ~ 8827271 (+)
LOC122355269 amz2 coding downstream 80498 8827577 ~ 8830821 (+)
si:dkey-220f10.4 si:dkey-220f10.4,LOC107584081,LOC107660871,LOC107554063,LOC107692044,LOC108444253,LOC108273760 coding downstream 96521 8843600 ~ 8856119 (+)
stx4 LOC107734241,LOC107660855,LOC107584077 coding downstream 109254 8856333 ~ 8862420 (+)
G86713 LOC107578697 non-coding upstream 58144 8682389 ~ 8686117 (+)
G86593 NA non-coding upstream 399293 8344669 ~ 8344968 (+)
G86577 NA non-coding upstream 452199 8291843 ~ 8292062 (+)
LOC122355856 NA non-coding upstream 537513 8204145 ~ 8206748 (+)
G86536 NA non-coding upstream 540118 8203583 ~ 8204143 (+)
G86756 NA non-coding downstream 126248 8873327 ~ 8873545 (+)
G86758 NA non-coding downstream 128036 8875115 ~ 8875455 (+)
G86943 NA non-coding downstream 734506 9481585 ~ 9487179 (+)
G86959 LOC107657285,LOC107733473,LOC107738963,LOC107665891 non-coding downstream 849214 9596293 ~ 9600682 (+)
LOC122355291 NA non-coding downstream 863214 9610293 ~ 9616636 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other upstream 546357 8195964 ~ 8197904 (+)
msrb1b msrb1b,LOC100705913 other upstream 637481 8105148 ~ 8106780 (+)
LOC122355675 NA other upstream 900178 7815823 ~ 7844083 (+)
G86143 NA other upstream 1436032 7307924 ~ 7308229 (+)
G86142 NA other upstream 1439413 7303138 ~ 7304848 (+)
arsg arsg,LOC107734203,LOC107660857,LOC107692046,LOC107554066 other downstream 89369 8836448 ~ 8852449 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other downstream 538584 9285663 ~ 9306831 (+)
mfsd8 mfsd8,LOC107738985,LOC107556570 other downstream 909590 9656669 ~ 9664139 (+)
LOC122355274 shisa9a,LOC107584108,LOC107734251,LOC107669237,LOC107554036,LOC107731434,LOC107692077 other downstream 1010168 9757247 ~ 9767228 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other downstream 1117735 9864814 ~ 9874515 (+)

Expression


Co-expression Network