mrpl27 (mrpl27,LOC107657270,LOC107665862,LOC107584394)


Basic Information

Item Value
gene id mrpl27
gene name mrpl27,LOC107657270,LOC107665862,LOC107584394
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9281191 ~ 9283080 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253389.1
GCCAGCCAAGTTCTGCAGTTCGCGGGTTCTGAAGCATCACGGGAACGCGTGGGCTGCGTCACGCTTACGTCATTCAAGATGGCGGCGCTCGCGTCCTTGATGCTGCAATCTAGAGCCTGTATTCTGTTCAGTCAGTCGCCCACAGTTGTACTGACGAGATTTGCTTCAAAGAAATCAGGAGGGAGCAGCAAAAACTTGGGAGGGAAGAGTGCTGGCCGCAGACATGGTTACAAGAAACAAGATGGAAACTTTGTACATGCGGGCAACATCCTTGCTACGCAACGCAAGGGTCTAATGCGCTGGCAGCCTGGAGCTCATGTTGGTATTGGAACCAATAAAACACTTTATGCCCTAGAGGATGGTACTGTCAGATTCACCAAGGAGGTGTACATTCCTCTGCCACGAAGTGCTGAAGCTAGAGAAGTGATCCCAAAACTTCCCAAGGGTGCTGTTTTGTACAAGACCTTTATTAATGTCATTCCTGTAAAACAGGAGAATAAATTTAAACTAGTGGAAATGGTATAATAAACACTTTCTTCAACTTCAGTTTGATGTAGATTCTTAAACCAGACTGGTAAACCACCCTCAAATATTTTGATGGTCTCCTTTCAAGTGTGTCtaaaaattttgaaatatttaatttctttttatttgtacagtcatgttaaattctaataaacatgttttcctACCA

Function

symbol description
mrpl27 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL27 (mitochondrial ribosomal protein L27).

NR:

description
39S ribosomal protein L27, mitochondrial

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02899 RP-L27, MRPL27, rpmA; large subunit ribosomal protein L27

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253389.1 True 694 mRNA 0.43 4 9281191 9283080

Neighbor

gene id symbol gene type direction distance location
ca10a ca10,ca10a,LOC107584395,LOC103361575 coding upstream 39699 9118929 ~ 9241492 (+)
caskin2 LOC107660851,LOC107734197,LOC107721987,LOC107692038,LOC564253,LOC101882765 coding upstream 338158 8896217 ~ 8943033 (+)
st6galnac1.2 NA coding upstream 385510 8891105 ~ 8895681 (+)
st6galnac1.1 st6galnac1.1,LOC107734167,LOC107584073,LOC107660870,LOC107692094,LOC107721986,LOC107577723 coding upstream 390985 8884780 ~ 8890206 (+)
LOC122355280 LOC107584204,LOC107734177,LOC107692095,LOC107554071,LOC107721984,LOC107660865 coding upstream 396557 8879370 ~ 8884634 (+)
wnt3 wnt3,LOC107584390,LOC107556586,LOC107723638,LOC107665892,LOC108273758,LOC100707095 coding downstream 215496 9498576 ~ 9521662 (+)
hdlbpb hdlbpb,LOC107733459,LOC107657280,LOC107584388,LOC108430121,LOC108273755 coding downstream 276600 9559680 ~ 9575720 (+)
polr2a polr2a,LOC107733452,LOC107584383,LOC107556578,LOC107738966 coding downstream 339723 9622803 ~ 9635117 (+)
capgb capgb,LOC107733451,LOC107657288,LOC107665882,LOC107556576,LOC108430072 coding downstream 353393 9636473 ~ 9644761 (+)
si:dkey-219e21.2 LOC107556575,LOC107738991,LOC107665865,LOC107733449,LOC107657266,LOC107584401 coding downstream 365671 9648751 ~ 9653386 (+)
G86758 NA non-coding upstream 405736 8875115 ~ 8875455 (+)
G86756 NA non-coding upstream 407646 8873327 ~ 8873545 (+)
G86713 LOC107578697 non-coding upstream 595074 8682389 ~ 8686117 (+)
G86593 NA non-coding upstream 936223 8344669 ~ 8344968 (+)
G86577 NA non-coding upstream 989129 8291843 ~ 8292062 (+)
G86943 NA non-coding downstream 198505 9481585 ~ 9487179 (+)
G86959 LOC107657285,LOC107733473,LOC107738963,LOC107665891 non-coding downstream 313213 9596293 ~ 9600682 (+)
LOC122355291 NA non-coding downstream 327213 9610293 ~ 9616636 (+)
G86981 NA non-coding downstream 336602 9619682 ~ 9622352 (+)
G86984 NA non-coding downstream 371879 9654959 ~ 9655277 (+)
arsg arsg,LOC107734203,LOC107660857,LOC107692046,LOC107554066 other upstream 428742 8836448 ~ 8852449 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other upstream 1083287 8195964 ~ 8197904 (+)
msrb1b msrb1b,LOC100705913 other upstream 1174411 8105148 ~ 8106780 (+)
LOC122355675 NA other upstream 1437108 7815823 ~ 7844083 (+)
G86143 NA other upstream 1972962 7307924 ~ 7308229 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other downstream 2583 9285663 ~ 9306831 (+)
mfsd8 mfsd8,LOC107738985,LOC107556570 other downstream 373589 9656669 ~ 9664139 (+)
LOC122355274 shisa9a,LOC107584108,LOC107734251,LOC107669237,LOC107554036,LOC107731434,LOC107692077 other downstream 474167 9757247 ~ 9767228 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other downstream 581734 9864814 ~ 9874515 (+)
LOC122355255 NA other downstream 599953 9883033 ~ 9899001 (+)

Expression


Co-expression Network