LOC122355289 (ercc4,LOC107734247,LOC107669240,LOC107692079)


Basic Information

Item Value
gene id LOC122355289
gene name ercc4,LOC107734247,LOC107669240,LOC107692079
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9734537 ~ 9740528 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253392.1
cGTTCGTGACAGACATACACCAAGGAGGCACTGATTTTTCTTATGATGCGAAAATAGGCTTCCACGGTTAAGTTATGCTAAAAATATTcagtgcattttttatattaaaaaacggAAGCCATAAGCATCTGGAGTTTCATTTCATACACATTCATGCACGGTTAGGAGTGCGTCTCTTGTgaagttgtttgtgttttttgtgggAGTTCTACCCCCAGTACAGCAGGTGGCGCCGGCGTAACCGAACGTTAGAAACCCCGCGGCGTCACGTGACACGATAACGCCTTTTTGAAACACGAAGGCGAGCGAAACTTGCGTAATGTAAAAGAATATGATATAGCTCAAAAGTATAGCTTTTTGTTCGGTTCTGCGATTACGTGTGTGCTACCGGCAAGTATAGATATTAAATGGAAGCGCTGTACTTTAGTTCGTCCTGATAAAAAAAGCGGTAAAACTGCAAGACCGTTCATGTCATCCAGCAAAGCAGCTTCGGTCGCTCGTGAAGATGGCGAGCCCGCTGCTGGAGTACGAGACGGAGATGTTTCTGAGTTTGTTCAGCTCGGACGGCTTGCTGGTCACAGCCGAGGGGCTCGGGGTCGACCGTATTCTCTTACACTTCATGAGAGTCTATTCGGAGGAGGGCAGTCTGGTGCTCCTGTTAAACACGACCACTCCTGAACAGGAGTATTTTACAGAGCAGCTCCGCGCTGAAGGAGTAAGCCATCTTCCCCAGACTGTGACCAGCGATGTGCATAATAATGAAAGATATAACGTGTACACTAAAGGAGGAGTTCTCTTTGTGACCAGCCGCATCCTAGTGGTGGACTTCCTCACCGACCGAATTCCTGCTAACCTCATAACAGGAATCCTGGTGTATCGTGCGCATAAGATCATTGAGTCTTGTCAGGAGGCTTTCATTCTGAGACTTTATCGGCAGAAAAACAAGACCGGGTTCATCAAGGCCTTTACGGACAAGGCCACGTCCTTCTCTTCTGGCTTCTGTAAAGTCGAGCGTGTCATGAGAAACCTGTTTGTGAAGAAGCTCTTTCTTTGGCCAAgATTTCAAGCATCAGTGAACACAACGCTGGACAAACACAAGCCGGATGTGGTGGAGCTCCATGTGTCTCTGACTCCAGCGATGAGAGCCATTCAGAGCTCTATCCTGGACATCATGAACGCCTGCTTGAAAGAGCTGAAGCGCTACAATCCCACTCTGGAAGCAGAAGACCTCTCTCTGGAGAACAGCCTGGGCACTTCCTTTGAAAAAaCAATTCGCCATTATCTTGACCCATTGTGGCATCAGCTGGGGTCCAGGACCAAATCTCTCGTTCAGGACCTAAAGATTTTAAGAACCCTTCTTCTCTACCTCACGCAGTACGACTGTGTCACCTTCCTCAATCTGCTAGAGTCTTTAAGAACCAGCCAGAAAAGCTTCGGTAGCAATTCAGGcttttttttttttttttttttNACTTCAATGTTTGTAAATGCTCGCAGCCGCGTGTATTGCATGCGAGAGTCAAAGAAGAAACTAAAAGTTGGAGAGAACGACCAGAAACGAAGTGCTCTAGGCCCTCCGATAAGAGAGCTCGTGCTTGAGAAAAATCCAAAGTGGGAAGCGTTAACAGAGGTGCTACAagagattgagaaagaaaacagcagCTCCGAGCGTGAACCAGGCCGTGTGTTGATTTGCGCCAGTGATGACAGAACATGTGCTCAGCTGAAGGAATATATCCAAAAAGGAGCAGAGCACCTACTGAATCGCCTTTATTCACGCACCATTGGAAAAGAAGATCCTCAGCCTGATTTACTGAAGCTTGACAAAGGCTGGAGCAAGAAGGCCTCCGCTAAGAGCAAAGGGAAAAACGGgcggccaaaaaaaaaacaaaccgcCTCAAAGAAACCAACAAAGAATGACAGACCTTCAAGAGTCTCTCAGATGGAGAGGCAGGAAGACGGAGCTGAAAAGGACCTAATTGGAAACAGTGGAGATGAAGGAAGTTTggctgaagaggaggaggaggaggaagaagaagagattCTTCTTGATATTTCTTCCGATGACTACTACGGAATCCTTAAAGAGCCGTTGACTGTCATTCACCCTTTGAAGGGATGCAGCGACCCCTACAGTTTGACGCGGGTGTTGCACGAAGTCGACCccatgtttgttgttttgtatgaTGCAGAACTCAGTTTTGTGCGGCAACTTGAGATTTATAAAGCCAGCAGGCCAGGAAAACCTCTCCGtgtatattttcttatatatggAGGCTCGACAGAAGAACAGAGGTATCTTACAGTCTTGAGCAAGGAAAAACAAGCATTTGAGTACCTCATAAGggaAAAGGCCAGCATGGTCGTtccagaagagagagagggtaGGGAAGACACCAACCTAGATCTTGTCCGCAGTCAGGAACCTGCCAGTGCCGCCACCAACACCCGCAAAGCAGGGGGCCGTGAAGATGTTAAAGAGCCTCAGCGAATCATAGTTGACATGCGGGAGTTCCGCAGTGAGCTTCCTTCCCTCCTGCATCAACGGGGTCTCGACATTGAGCCCATCACCTTAGAGGTCGGCGACTACATATTGACTTCAGAGATCTGCGTGGAGCGCAAAAGCGTCAGCGATCTCATTGGGTCACTACAAAGCGGGCGTCTCTACACACAGTGCCTCTCTATGACTCGATTCTATCGCCGTCCGGTGCTGCTTATCGAGTTTGACCCCGCCAAGCCTTTCTCCCTCGTGGCCCGCAGTGATTTTCGTCAGGAGATTTCTGCCAGCGACGTCACATCTAAACTGACCCTCCTCACCCTCCATTTCCCCCGCCTGAGGCTGCTCTGGTGCCCGTCTCCCTACGTGACGGCAGAGCTGTTTCAGGAGCTCAAACGCGGCCGCCCGGAGCCCGACGCCGCCACAGCTCAGGCCGTTACTGCCGAATCAGAGACGGTGACGGAGTCAGCAGACCTGTACAACCCCGGACCTCACGACTTCTTGCTCCGCATGCCTGGAGTCAATGTGAAAAACTTCAAGAGCCTTGTAAAACACGCTTCCTGTCTGGCCGATCTTCTAACATTTAGTCAGGAAAAGCTCAGTGAGATCTTGGCCAGTGGTAGCAATGCCAGGCAGCTTTACGAATTCCTACACAATCCTATGGATGTGGTGCCTGTTCAGAAAAACAAGCAGACATTGTAAAGATGAAAAGTATTGGCGTCGTAATCTCAGGTTTGGTAATTGTTCCTTGTCAAAAGGGATCGGTGTTCATATTTATTAGgaaatgtttgtattaaatgcagtgagtgaattattatatttatgaatatttaaagggataattcacccaaatcTGTCATTTAACTACtaaccttcatgtcattccaaaccttcgTTTATCGTTGGAACACAAATTTCTTGATGAATTctaagagctctctgaccctcccatAAACAGCATAGATCCTAACACAATCAACTGTAATTTCacaaagctatgagaatactttttgtgtacaaagaaaacaaaaataataacattttctaattttTATGGTGCCATTTTTGAAGAGTAACACATACGTAATAAACGCATGCAATGTTATGTATACCACGAATACATTGTTTGCGTATgcgatactctccaaaatggtgctataAAAAGGAGCAAAAGattaattgttgaataaaggggTTTTTTGTGTGCGTATAAAGTATTCTTACGGTTGTCATACCACTGATGTCATATGGATTAATTGAACAAGGttcttactacctttctggaccttgatgTTAGGATCAATGTTGTCTGTGGAAGGGGTCAGAAAGCCCTCGGAAATCATCAGAAGTGTTTTAATTCGTGTTCCAAAAATGAATGCTGGTCCTCGAGCTTAGCaacgacatgaggatgagtaattaacgacagtgttttcctttttgggtgaagtattcctttaaatacCTTGTTTGTTAGAATCTAACTTTGCGGTTTGTAATGAATTGCAACATTGCTGTGTATTGTGGAAATTTAAATGCACttgcttattttaatatttaatattttcatggcCAAATTCCACTCTTAAAAAaattcatgaataaaataaattatttctctaa

Function

symbol description
ercc4 Predicted to enable damaged DNA binding activity; single-stranded DNA binding activity; and single-stranded DNA endodeoxyribonuclease activity. Predicted to be involved in DNA metabolic process. Predicted to act upstream of or within DNA repair. Predicted to be part of nucleotide-excision repair factor 1 complex. Is expressed in liver. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group Q; XFE progeroid syndrome; pancreatic cancer; xeroderma pigmentosum; and xeroderma pigmentosum group F. Orthologous to human ERCC4 (ERCC excision repair 4, endonuclease catalytic subunit).

NR:

description
PREDICTED: DNA repair endonuclease XPF-like

GO:

id name namespace
GO:0000710 meiotic mismatch repair biological_process
GO:0000712 resolution of meiotic recombination intermediates biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0006296 nucleotide-excision repair, DNA incision, 5'-to lesion biological_process
GO:0000110 nucleotide-excision repair factor 1 complex cellular_component
GO:0000014 single-stranded DNA endodeoxyribonuclease activity molecular_function
GO:0003697 single-stranded DNA binding molecular_function

KEGG:

id description
K10848 ERCC4, XPF; DNA excision repair protein ERCC-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253392.1 True 4117 mRNA 0.45 11 9734537 9740528

Neighbor

gene id symbol gene type direction distance location
LOC122355243 LOC107734216,LOC107669223,LOC107584111,LOC107692080,LOC107554034 coding downstream 197 9713064 ~ 9734340 (-)
zcchc4 zcchc4,LOC107657290,LOC107733462,LOC107738986 coding downstream 63257 9662758 ~ 9671280 (-)
zbtb4 LOC107733450,LOC107657284,LOC107584385,LOC107738964,LOC107556580,LOC107665872 coding downstream 118996 9601511 ~ 9615541 (-)
shbg LOC107733473,LOC107657285,LOC107584386,LOC107665891,LOC107738963 coding downstream 133865 9596295 ~ 9600672 (-)
neurl4 neurl4,LOC107733461,LOC107665870,LOC107738962,LOC107657283 coding downstream 139606 9576232 ~ 9594931 (-)
LOC122355272 cpped1,LOC107584109,LOC107669238,LOC107554009 coding upstream 2864 9743392 ~ 9756047 (-)
LOC122355287 fam20cb,fam20c,LOC107734234,LOC107699871,LOC107669229,LOC107731385,LOC108432010 coding upstream 47497 9788025 ~ 9805510 (-)
LOC122355804 nrg3b,LOC107566665,LOC107573948,LOC107678479,LOC107689960 coding upstream 397910 10138438 ~ 10144729 (-)
chac2 chac2,LOC107749368,LOC107686371 coding upstream 870120 10610648 ~ 10613502 (-)
foxn2b LOC107698833,LOC107749364,LOC107550040,LOC107582787,LOC107728721,LOC107673647 coding upstream 1159725 10900253 ~ 10915884 (-)
G87034 NA non-coding downstream 99420 9632044 ~ 9635117 (-)
G87019 NA non-coding downstream 160012 9573634 ~ 9574525 (-)
G86916 NA non-coding downstream 434638 9299679 ~ 9299899 (-)
G86861 LOC107734218,LOC107660853,LOC107584076 non-coding downstream 865475 8867892 ~ 8869062 (-)
G86862 NA non-coding downstream 870274 8863441 ~ 8864263 (-)
G87055 NA non-coding upstream 22574 9763102 ~ 9767238 (-)
G87104 NA non-coding upstream 620349 10360877 ~ 10361414 (-)
LOC122355705 nrg3b,LOC107678479,LOC108426474,LOC107689960,LOC108273971,LOC107566665,LOC107387893 non-coding upstream 668811 10409339 ~ 10444778 (-)
G87125 svila,svil,LOC107584371 non-coding upstream 838226 10578754 ~ 10582536 (-)
G87164 NA non-coding upstream 864704 10605232 ~ 10606019 (-)
ormdl3 ormdl3,LOC107723636,LOC107657273,LOC107556587,LOC108273759,LOC102217224,LOC106521946,LOC102783025,LOC105936292,LOC107092838 other downstream 245225 9481559 ~ 9489312 (-)
LOC122355288 LOC107660874 other downstream 856406 8875617 ~ 8878131 (-)
trnar-ccu_66 NA other downstream 1046967 8687498 ~ 8687570 (-)
plbd1b LOC107578697 other downstream 1046989 8682443 ~ 8687548 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other downstream 1122092 8610552 ~ 8612445 (-)
cript cript,LOC107582781,LOC107728714 other upstream 1264478 11005006 ~ 11006954 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other upstream 1302360 11042888 ~ 11045889 (-)
G87489 NA other upstream 1580895 11321423 ~ 11322603 (-)
G87569 NA other upstream 2092351 11832879 ~ 11835612 (-)
G87608 NA other upstream 2208012 11948540 ~ 11951155 (-)

Expression


Co-expression Network