abi3b (abi3b,LOC107654042,LOC107598650,LOC107743966,LOC107664617,LOC107708878)


Basic Information

Item Value
gene id abi3b
gene name abi3b,LOC107654042,LOC107598650,LOC107743966,LOC107664617,LOC107708878
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 798821 ~ 802802 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253399.1
CTTCAGTCTAGTCGCTCTATAGTCCTGCTTCGGTTGAGTCTCACCAGAGTCGGCGGAGAGGAGCAGCATTCAGCAGCTCGTACTGCAGACCTGCACGATGAGAGACAACAGCTGTAAAGAACGCGTAGACAAAATCCTGCGAGAGGCTCCGACCGCCAGGAAAGCTCTTCTAGACAACCACAGCAATCTGCACAAGGTGGCCGATTACTGTCAGAACAAATACCTCAACGTGGAGGACACGAGAAGCGTCATTGAAGAGTCCAAAGCTCTCACCACGCAGGCCCTGGCCAGTGTCACATATCAGATAAACAATCTGGCCACGTCTGTGCTGAAAATCTTAGATGCTCAGACGGTTCAGCTCAAACAGATGGAGTCCTCCGTCAACTTATTGACTCTGACGGTCGGCATGTACAAGGAGAAAATAGCTCGGAAAGAGATCGGAGTGTTGACCAACGAGTCAAAAGTCCCCCGGACTCAGAAGGTGGTCTCTCCGGCGAGCGGTCTGGAGCCCATGCGTTCTTACAGACGGGTTCCTATATCCTACACCCGCTTGGACAAACTGGGCCACGGCCACTGGCAAGGCAGCAAAACTGACGAGGCAAACACAGACAATGAGGACTCTATGTCTGTTCAGCTCGGAGCACAGGACACCAGCACCTTCAACTGGTCTTTCTTGGGTATCGCCGTTCCTCCTCCGTCAGTGCCAGACTCGGTGGCTCCACCCGATCTCTCTCCGGCTTCACCGCCTCCGACGCTCGTGTCTGACCGCTCCCCGTCTCTGCCTGCCCATCTAGACCTGTCCATGCTGCCTCCTCCACCTCTCCCAGACGATGAGCTGGATGACGCTCCGCccccacctcctcctccttctcctcctccacctggtTCTGTGTATGGAGGTTCTGTGGttccccctccaccacctccactTGGCCAAAATACCTCATTAACTTCAGCaaaccctccacctcctcctcctcctcctcctccagggAACATGGctattcctcctcctcctcctccacctcctccaggCAATGTCCCTGTcccacctcctccacctcccGTCCAGGGTAAGACggctcttcctcctcctcctcctcctcctggcTCTTACAGTGGATCTTCACtacctccacctccacctccacaAAACACCTCCACTGTGCCACCACCACCGCCTCCTCCTCCTAATACCGGAGGAAAGTTTATTCCCCCACCTCCTCCACCTCTCCCATTTTGATAGCTTTTTTCcaatgtatttttatggaaaagaCTATACGATATTTAATACGACATACAGCTGTCAAAcgagcatccaaaataaatttttgtttacatttatatatgcatgtgtagtgtgtatatttattatgcatgtataaatacacacacatacagtatatatatatttagtaaatatttg
>XM_043253400.1
CAGCAATCTGCACAAGGTGGCCGATTACTGTCAGAACAAATACCTCAACGTGAGCCATTTTGAGTTTTTCCTATACATTTAAATGCGCAGTGACACGTCTAGAAAACTACGAAATGAGTTCTTCGCGTTTACGGTGGAGGACACGAGAAGCGTCATTGAAGAGTCCAAAGCTCTCACCACGCAGGCCCTGGCCAGTGTCACATATCAGATAAACAATCTGGCCACGTCTGTGCTGAAAATCTTAGATGCTCAGACGGTTCAGCTCAAACAGATGGAGTCCTCCGTCAACTTATTGACTCTGACGGTCGGCATGTACAAGGAGAAAATAGCTCGGAAAGAGATCGGAGTGTTGACCAACGAGTCAAAAGTCCCCCGGACTCAGAAGGTGGTCTCTCCGGCGAGCGGTCTGGAGCCCATGCGTTCTTACAGACGGGTTCCTATATCCTACACCCGCTTGGACAAACTGGGCCACGGCCACTGGCAAGGCAGCAAAACTGACGAGGCAAACACAGACAATGAGGACTCTATGTCTGTTCAGCTCGGAGCACAGGACACCAGCACCTTCAACTGGTCTTTCTTGGGTATCGCCGTTCCTCCTCCGTCAGTGCCAGACTCGGTGGCTCCACCCGATCTCTCTCCGGCTTCACCGCCTCCGACGCTCGTGTCTGACCGCTCCCCGTCTCTGCCTGCCCATCTAGACCTGTCCATGCTGCCTCCTCCACCTCTCCCAGACGATGAGCTGGATGACGCTCCGCccccacctcctcctccttctcctcctccacctggtTCTGTGTATGGAGGTTCTGTGGttccccctccaccacctccactTGGCCAAAATACCTCATTAACTTCAGCaaaccctccacctcctcctcctcctcctcctccagggAACATGGctattcctcctcctcctcctccacctcctccaggCAATGTCCCTGTcccacctcctccacctcccGTCCAGGGTAAGACggctcttcctcctcctcctcctcctcctggcTCTTACAGTGGATCTTCACtacctccacctccacctccacaAAACACCTCCACTGTGCCACCACCACCGCCTCCTCCTCCTAATACCGGAGGAAAGTTTATTCCCCCACCTCCTCCACCTCTCCCATTTTGATAGCTTTTTTCcaatgtatttttatggaaaagaCTATACGATATTTAATACGACATACAGCTGTCAAAcgagcatccaaaataaatttttgtttacatttatatatgcatgtgtagtgtgtatatttattatgcatgtataaatacacacacatacagtatatatatatttagtaaatatttg
>XM_043253401.1
TACGAAATGAGTTCTTCGCGTTTACGGTAGGCCTAAACATTCAGAATCAACAAATACGTTGCAACTATCCTAGAGATGACACGATCGCTTCTGTTCTCCTGTTTGACTTGgatttaataacaatttattaatgGTGGAGGACACGAGAAGCGTCATTGAAGAGTCCAAAGCTCTCACCACGCAGGCCCTGGCCAGTGTCACATATCAGATAAACAATCTGGCCACGTCTGTGCTGAAAATCTTAGATGCTCAGACGGTTCAGCTCAAACAGATGGAGTCCTCCGTCAACTTATTGACTCTGACGGTCGGCATGTACAAGGAGAAAATAGCTCGGAAAGAGATCGGAGTGTTGACCAACGAGTCAAAAGTCCCCCGGACTCAGAAGGTGGTCTCTCCGGCGAGCGGTCTGGAGCCCATGCGTTCTTACAGACGGGTTCCTATATCCTACACCCGCTTGGACAAACTGGGCCACGGCCACTGGCAAGGCAGCAAAACTGACGAGGCAAACACAGACAATGAGGACTCTATGTCTGTTCAGCTCGGAGCACAGGACACCAGCACCTTCAACTGGTCTTTCTTGGGTATCGCCGTTCCTCCTCCGTCAGTGCCAGACTCGGTGGCTCCACCCGATCTCTCTCCGGCTTCACCGCCTCCGACGCTCGTGTCTGACCGCTCCCCGTCTCTGCCTGCCCATCTAGACCTGTCCATGCTGCCTCCTCCACCTCTCCCAGACGATGAGCTGGATGACGCTCCGCccccacctcctcctccttctcctcctccacctggtTCTGTGTATGGAGGTTCTGTGGttccccctccaccacctccactTGGCCAAAATACCTCATTAACTTCAGCaaaccctccacctcctcctcctcctcctcctccagggAACATGGctattcctcctcctcctcctccacctcctccaggCAATGTCCCTGTcccacctcctccacctcccGTCCAGGGTAAGACggctcttcctcctcctcctcctcctcctggcTCTTACAGTGGATCTTCACtacctccacctccacctccacaAAACACCTCCACTGTGCCACCACCACCGCCTCCTCCTCCTAATACCGGAGGAAAGTTTATTCCCCCACCTCCTCCACCTCTCCCATTTTGATAGCTTTTTTCcaatgtatttttatggaaaagaCTATACGATATTTAATACGACATACAGCTGTCAAAcgagcatccaaaataaatttttgtttacatttatatatgcatgtgtagtgtgtatatttattatgcatgtataaatacacacacatacagtatatatatatttagtaaatatttg
>XM_043253402.1
ATCTTCAGTCTAGTCGCTCTATAGTCCTGCTTCGGTTGAGTCTCACCAGAGTCGGCGGAGAGGAGCAGCATTCAGCAGCTCGTACTGCAGACCTGCACGATGAGAGACAACAGCTGTAAAGAACGCGTAGACAAAATCCTGCGAGAGGCTCCGACCGCCAGGAAAGCTCTTCTAGACAACCACAGCAATCTGCACAAGGTGGCCGATTACTGTCAGAACAAATACCTCAACACGGTCGGCATGTACAAGGAGAAAATAGCTCGGAAAGAGATCGGAGTGTTGACCAACGAGTCAAAAGTCCCCCGGACTCAGAAGGTGGTCTCTCCGGCGAGCGGTCTGGAGCCCATGCGTTCTTACAGACGGGTTCCTATATCCTACACCCGCTTGGACAAACTGGGCCACGGCCACTGGCAAGGCAGCAAAACTGACGAGGCAAACACAGACAATGAGGACTCTATGTCTGTTCAGCTCGGAGCACAGGACACCAGCACCTTCAACTGGTCTTTCTTGGGTATCGCCGTTCCTCCTCCGTCAGTGCCAGACTCGGTGGCTCCACCCGATCTCTCTCCGGCTTCACCGCCTCCGACGCTCGTGTCTGACCGCTCCCCGTCTCTGCCTGCCCATCTAGACCTGTCCATGCTGCCTCCTCCACCTCTCCCAGACGATGAGCTGGATGACGCTCCGCccccacctcctcctccttctcctcctccacctggtTCTGTGTATGGAGGTTCTGTGGttccccctccaccacctccactTGGCCAAAATACCTCATTAACTTCAGCaaaccctccacctcctcctcctcctcctcctccagggAACATGGctattcctcctcctcctcctccacctcctccaggCAATGTCCCTGTcccacctcctccacctcccGTCCAGGGTAAGACggctcttcctcctcctcctcctcctcctggcTCTTACAGTGGATCTTCACtacctccacctccacctccacaAAACACCTCCACTGTGCCACCACCACCGCCTCCTCCTCCTAATACCGGAGGAAAGTTTATTCCCCCACCTCCTCCACCTCTCCCATTTTGATAGCTTTTTTCcaatgtatttttatggaaaagaCTATACGATATTTAATACGACATACAGCTGTCAAAcgagcatccaaaataaatttttgtttacatttatatatgcatgtgtagtgtgtatatttattatgcatgtataaatacacacacatacagtatatatatatttagtaaatatttg

Function

symbol description
abi3b Predicted to enable SH3 domain binding activity. Predicted to be active in lamellipodium. Orthologous to human ABI3 (ABI family member 3).

NR:

description
PREDICTED: wiskott-Aldrich syndrome protein family member 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253399.1 True 1426 mRNA 0.52 5 798821 802800
XM_043253400.1 False 1330 mRNA 0.51 5 798821 802620
XM_043253401.1 False 1330 mRNA 0.50 5 798821 802513
XM_043253402.1 False 1260 mRNA 0.52 4 798821 802802

Neighbor

gene id symbol gene type direction distance location
LOC122355750 LOC107654041 coding downstream 1097 778501 ~ 797724 (-)
tbc1d12b LOC107743959,LOC107654040,LOC107708937,LOC107664632 coding downstream 36217 746267 ~ 762604 (-)
noc3l noc3l,LOC107664623,LOC107654039,LOC107743960 coding downstream 53718 736648 ~ 745103 (-)
fra10ac1 fra10ac1,LOC107664625,LOC107654038,LOC107708941,LOC107557362,LOC107743956 coding downstream 148633 640871 ~ 650188 (-)
rbp4 rbp4,LOC107743953,LOC107664626,LOC107598599,LOC107557363,LOC107653948 coding downstream 172299 623911 ~ 626522 (-)
itga3b itga3,itga3b,LOC107708875,LOC107664597,LOC107557321 coding upstream 35012 837814 ~ 867877 (-)
kat7b kat7b,kat7,LOC107598609,LOC107739754,LOC107708935,LOC107654043,LOC108443263 coding upstream 180198 983000 ~ 990248 (-)
g6pc1a.1 LOC107654044,LOC107598610,LOC107739755,LOC107708934,LOC107695523 coding upstream 196385 999187 ~ 1005075 (-)
aarsd1 aarsd1,LOC107739756,LOC107695514,LOC107708900,LOC107598654 coding upstream 207185 1009987 ~ 1017230 (-)
a1cf a1cf,LOC107654048,LOC107739758,LOC107695528,LOC107708930 coding upstream 242614 1045416 ~ 1056434 (-)
G84700 NA non-coding downstream 9818 759925 ~ 789003 (-)
LOC122355303 NA non-coding downstream 28923 766654 ~ 769898 (-)
G84666 slc35g1,si:ch211-197g18.2,LOC107598601,LOC107654036,LOC107664634,LOC107664593,LOC107557359,LOC107708939 non-coding downstream 135075 660089 ~ 663746 (-)
G84654 NA non-coding downstream 186974 610067 ~ 611847 (-)
G84547 NA non-coding downstream 320390 478023 ~ 478431 (-)
LOC122355070 NA non-coding upstream 144225 947027 ~ 979785 (-)
G84793 prkg1,prkg1b,LOC107695529,LOC107654050 non-coding upstream 262131 1064933 ~ 1065345 (-)
LOC122355531 NA non-coding upstream 346137 1148939 ~ 1172741 (-)
G84795 NA non-coding upstream 358296 1161098 ~ 1182132 (-)
G84804 NA non-coding upstream 375733 1178535 ~ 1179376 (-)
ifnphi4 LOC107653919,LOC107732171,LOC107598640,LOC107664622,LOC107708945,LOC107557348 other downstream 246378 543246 ~ 552443 (-)
zgc:163073 LOC107653918,LOC107732170,LOC107708955,LOC107557349,LOC107664608,LOC107598675 other downstream 298602 496964 ~ 500219 (-)
LOC122355759 NA other downstream 308442 484438 ~ 490379 (-)
prr12a prr12a,LOC107708947,LOC107664611,LOC107598586,LOC107654018,LOC107732166 other downstream 438339 340273 ~ 360482 (-)
G84521 NA other downstream 477561 319330 ~ 321260 (-)
dlx4b dlx4b,LOC107739765,LOC107557342,LOC107708902 other upstream 86908 889710 ~ 897517 (-)
ank3b ank3b,LOC107654059,LOC107695539 other upstream 1011281 1814083 ~ 1947412 (-)
jmjd1cb jmjd1c,LOC107745648,LOC107654065,LOC107695544 other upstream 1371186 2173988 ~ 2285052 (-)
G85232 LOC107663296,LOC107583514,LOC107733536 other upstream 1965106 2767908 ~ 2781353 (-)
LOC122355711 rara,LOC107700643,LOC107717720,LOC107565243,LOC107563215,LOC107719850,LOC108434941,LOC108261354,LOC107554136,LOC107737746,LOC108276117 other upstream 2286827 3089629 ~ 3103315 (-)

Expression


Co-expression Network