maff (maff,LOC107690056,LOC107584105,LOC107692071,LOC107554043,LOC107731405,LOC107734233)


Basic Information

Item Value
gene id maff
gene name maff,LOC107690056,LOC107584105,LOC107692071,LOC107554043,LOC107731405,LOC107734233
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8535986 ~ 8541171 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253406.1
ttttatgaatgaaagGATCCAGCCCGCTGATGGTGGACTGATTCCGGGAAAAAGGCGTTTAGCTTTCTAGTCCGTCTAAACACGGGCCGTGCTGCGATAACGTATGTCAGTCGAAATACCGAACCAGCGGTGAGAATCGTGGACCGATCCGTATACTCAGCTTCGTGTGAATCAACAAAGAGGAGAAATCAACACCAGGCTTCAGGGATACATAAACCCAGACAATGACTTCAGACGGCAGAGCCAGTAAAGCCCTGAAGGTGAAGAGGGAATGCGGGGAGAACGTCCCAGTGCTGAGCGACAGTGAGCTCATGTCTCTGTCGGTGCGCGAGCTCAACATGCACCTGCGCGGTTTGTCACGCGAGGAAGTGCAGAAGCTGAAGCAGAGGCGGCGCACGTTGAAAAACCGCGGCTACGCCGCGAGCTGCCGGGTGAAGCGCGTGTCCCAGCGCGAGGCCCTGGAGCAGCAGAAGAAGGAGCTGCAGCGGGAGGTTGAGCGGCTAGGGGCCGAGAACGCAGGCATGCGGCGGGAGCTGGAAGGGCTGGGTGCCCGTCTCGCTGCCCTCCAGCGCTTCGCCAGAGGTCTGGAGTCCGGAGGAGGCAGTCTGCTGGCCACCACACCACGTCTGAACACAGCCTCCGTCATTACCATAGTGAAGACACCGCAGCAGGTGCACACCCCTAGAGAGCAAGGAGCGTCCTAGGGCTCCACATGGATACGCAGACACACATAGGTACACAGTATGAtcgcacagacagacagaccatGTATACTCACATATACAGGAAGAAAAACAAGTACCAGTGGGGAACTACAGATTCacttacatatataaacacacacagactgtaTATACAGTCTCATAAATGTCCAAGAATAATCCCAGTACTGTTGTTGTGGCCTCGAATATCATGACAAGTGTATAAGTCTGCACTTATAAAGCTATTGCTAATGATAGCGTTAATGCTATTTATGCCCATTACTGTGCTTTCTGGATGGTGATACacgttttgaagaaaaaaaaaatagtcctAACAACCTGTCTTATTATGTGGGACCACCAACATTTCAGAAGCTGGTTAGTTTTGCTGGATTATCTCCATGGTATTACTGAGTCATGGGACTAGAAACGTGCAGATCTATTGATACAtgccatttatatattttaatgtttgtataaaAGACAAATGTTCAACAACAGACATGAAAgctattttatttgtgttcgaAAAGATGTTTGAAGGTAATTTGTGCTGTGATTGGTCTAAATACTACTTCTGATCGACTAGTTTGGGGTCATTGTTTgaattattgtgtgttttttgtaatgtttacttGTTGTAATGAGTTAGTAGTTTAGAAATGGTAAGGTATACAGCCTTATTACTTGTCATATGATTCAGTACGTGCGAGGGTCATATTTGTACTAATATTAGAGCGACTTGTTTGTAGtggtatttttgtatttaaaaccaagaccatatatattatttgctatttatGATTAAGAACGTATCTGAATATTTTGGACAGCTGGaatagtacaaaaaaattaaaaataccattggagagaaaaaaggagatGAAGGGGAATCTGAGGAAGATGTGAAAATAGAGGACAAAGGGGAAGAGAGCAGCTAGAAGGAGAAGCGAGCACTTGCGGCTCACACGGGAGGGAAAAAAGGAGGATAGGAAAGTGACGGAAGGAAAGCGAAAGACAAAAATGATATCACATGTACATCACGTCAACCCGTGGTCGCCGGGATAACTTCCGACTACAAGCCGGGTTTACTCCAGTGAATGGGGTGATACTGTACGATCAGGTAACGATTGGCCATGTTTAACGTGGATATCTCTggtgatatttttatttgtgtagttaGCAATGTTGTCATCAGTACTGAGAATCTAACCTggtaatatcatgcccataataccTGTGCTTCAGAACAATGTGTGAATGTTTTGTAAGAGGAGAGGgcacggaaaaaaaaaacaacaacaactgatgtttgtatttattatctGTATTTTTCTATGGTAAATTCATTGtctattttatatcatttaattgaaataaatgttgtatatattgtatatagaaa

Function

symbol description
maff Enables DNA binding activity and protein heterodimerization activity. Contributes to DNA-binding transcription factor activity. Acts upstream of or within positive regulation of transcription, DNA-templated. Part of transcription regulator complex. Orthologous to human MAFF (MAF bZIP transcription factor F).

NR:

description
PREDICTED: transcription factor MafF-like isoform X1

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253406.1 True 2106 mRNA 0.44 3 8535986 8541171

Neighbor

gene id symbol gene type direction distance location
shisa9a shisa9a,LOC107584108,LOC107734251,LOC107669237,LOC107554036,LOC107692077,LOC107731434 coding upstream 147658 8361185 ~ 8388328 (+)
LOC122355370 NA coding upstream 232445 8292736 ~ 8303541 (+)
ubald1a ubald1a,ubald1,LOC107734217,LOC107669224,LOC107731421,LOC107554033 coding upstream 247217 8279068 ~ 8288769 (+)
rhbdf1b LOC107734220,LOC107731426,LOC107584114,LOC107692086,LOC107669219,LOC107594190 coding upstream 292729 8215566 ~ 8243257 (+)
hbbe3 hbbe3,LOC107734188,LOC107669171 coding upstream 333234 8201945 ~ 8202752 (+)
si:ch211-141o9.10 si:ch211-141o9.10,LOC107690061,LOC107584211,LOC107734185,LOC107584178,LOC108431982,LOC107089545 coding downstream 27607 8568778 ~ 8573399 (+)
cdc42ep1a LOC107584101,LOC107690062,LOC107734237,LOC107692066,LOC107554048,LOC107731423 coding downstream 42347 8583518 ~ 8592029 (+)
zc3h7bb LOC107690064,LOC107692064,LOC107734154,LOC107554050 coding downstream 72168 8613339 ~ 8626327 (+)
tefa LOC107584098,LOC107734194,LOC107663181 coding downstream 87456 8628627 ~ 8634070 (+)
aco2 aco2,LOC107734200,LOC107584097,LOC107731401,LOC107554054,LOC107692062,LOC108273913 coding downstream 99479 8640650 ~ 8649914 (+)
G86593 NA non-coding upstream 191018 8344669 ~ 8344968 (+)
G86577 NA non-coding upstream 243924 8291843 ~ 8292062 (+)
LOC122355856 NA non-coding upstream 329238 8204145 ~ 8206748 (+)
G86536 NA non-coding upstream 331843 8203583 ~ 8204143 (+)
G86540 NA non-coding upstream 337576 8198094 ~ 8198410 (+)
G86713 LOC107578697 non-coding downstream 141218 8682389 ~ 8686117 (+)
G86756 NA non-coding downstream 332156 8873327 ~ 8873545 (+)
G86758 NA non-coding downstream 333944 8875115 ~ 8875455 (+)
G86943 NA non-coding downstream 940414 9481585 ~ 9487179 (+)
G86959 LOC107657285,LOC107733473,LOC107738963,LOC107665891 non-coding downstream 1055122 9596293 ~ 9600682 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other upstream 338082 8195964 ~ 8197904 (+)
msrb1b msrb1b,LOC100705913 other upstream 429206 8105148 ~ 8106780 (+)
LOC122355675 NA other upstream 691903 7815823 ~ 7844083 (+)
G86143 NA other upstream 1227757 7307924 ~ 7308229 (+)
G86142 NA other upstream 1231138 7303138 ~ 7304848 (+)
arsg arsg,LOC107734203,LOC107660857,LOC107692046,LOC107554066 other downstream 295277 8836448 ~ 8852449 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other downstream 744492 9285663 ~ 9306831 (+)
mfsd8 mfsd8,LOC107738985,LOC107556570 other downstream 1115498 9656669 ~ 9664139 (+)
LOC122355274 shisa9a,LOC107584108,LOC107734251,LOC107669237,LOC107554036,LOC107731434,LOC107692077 other downstream 1216076 9757247 ~ 9767228 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other downstream 1323643 9864814 ~ 9874515 (+)

Expression


Co-expression Network