becn1 (becn1,atg6)


Basic Information

Item Value
gene id becn1
gene name becn1,atg6
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5886952 ~ 5953486 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253407.1
aaaaattaaaagaagaagagaaagaacgCGTAATTTCCCCTGTTGGCAGTAAACAGGAAGAGCACTGATACTATAAGGAGACGGCTATTGAaagAAAATGGAGGGTTTAAAGTTTTCTAGCAACACTATGCAGGTGAGTTTTGTGTGCCAGCGCTGCAGTCAGCCACTGAAGCTCGACACATCTTTCAACGTTTTAGACAGACTGACTATCCACGAGCTCACAGcTCCATTGTTGACAGTGGCAGCCAATAAACATTCAGAAAGCAGTGAGGGCAGCCGTTTTCCTGAAgaAACATTTTTGGAGAGCAAACAGGATGGAGTGGCTCGGAAATATATCCCACCCGCAAGgATGATGTCAACCGAAAGCGCAAATAGTTTCACTCTAATTGGAGAAGCTTCAGATGGAGGAACTATGGAGAACTTGAGTCGTAGACTGAAAGTGACAAGTGATTTGTTTGATATCATGTCTGGTCAGACAGACATTGATCACCCACTATGCGAGGAGTGCACTGACACACTGCTGGACCATCTGGACACACAACTCAGCATTACAGAAAATGAGTGCCAGAATTACAAGAGCTGTTTAGAGTTGCTGTCTCAACTACCTGAAGAGGAGGAGTCTAGACTGCTGAATTCACTGGAGCAGTTGAAACAAGAGGAGGAATCTCTGATCCAGGAGCTGGAGAGCATTGAGGTGCAGCGTGAGGCCGTGGCTAAAGAGCTCGCCCAGGGACGCAATCATAGCCAGCTGATGGACACAGATGAGcttcaGTATCAGAAGGAGTACTGCGAATTTAAGAGACAGCAGCTGGAGCTGGATGATGATCTTAAGAGTGTGGACAATCAAATGCGTTACTGTCAGAGTCAGCTGGACAGACTCAAGAAGACCAACGTTTTCAATGCCACCTTTCATATCTGGCACAGTGGGCAGTTCGGAACAATAAATAACTTCCGCTTAGGCAGATTACCCAGTGTACCAGTGGAGTGGAATGAGATCAATGCAGCCTGGGGTCAAACTGTACTTCTGCTGCATGCACTTGCTAACAAGATGGGACTATGCTTTCAGAGATATCGACTTGTTCCATACGGAAACCATTCCTATTTGGAATCTCTCACAGATAAGTCCAAGGAGCTGCCATTGTATTGCTCAGGTGGTCTACGCTTTTTCTGGGATAATAAATTTGATCATGCTATGGTGGCCTTCCTAGACTGTGTCCAGCAGTTTAAAGATGAGGTGGAGAAGGGTGACACAGGCTTTTGTCTGCCATATAGTCGCTTCAGGATTAATGGTATCTGGATCTTTtgtcacaaaaaaatacaagaagacaaatacatttttgaaccACAAAGGAATGAGCAACAGCTGAATTATTTTGGACATGAATGGATGTGGACAAAGGAAAGATTGAGGACACTGGAGGCAGTGGAGGTTCGTACTCTATTAAGACCCAGTTTAACTCAGAGGAACAGTGGACCAAAGCCCTGAAGTTCATGCTCACTAACCTGAAGTGGGGTCTGGCCTGGGTTTCCTCACAGTTTTACAACCGTTAGAATTCATTTTGACTCTGACACCTGATCAACGACACCAGGAAACCACATTAAATCTTTACAGCACTAAGAGGAGAATTTACCCAATTGaaatctttgtgtgttttttgtgtttgcctATTAATCATTAAATCAGTAATGCAAA
>XM_043253408.1
aaaaattaaaagaagaagagaaagaacgCGTAATTTCCCCTGTTGGCAGTAAACAGGAAGAGCACTGATACTATAAGGAGACGGCTATTGAaagAAAATGGAGGGTTTAAAGTTTTCTAGCAACACTATGCAGGTGAGTTTTGTGTGCCAGCGCTGCAGTCAGCCACTGAAGCTCGACACATCTTTCAACGTTTTAGACAGACTGACTATCCACGAGCTCACAGcTCCATTGTTGACAGTGGCAGCCAATAAACATTCAGAAAGCAGTGAGGGCAGCCGTTTTCCTGAAgaAACATTTTTGGAGAGCAAACAGGATGGAGTGGCTCGGAAATATATCCCACCCGCAAGgATGATGTCAACCGAAAGCGCAAATAGTTTCACTCTAATTGGAGAAGCTTCAGATGGAGGAACTATGGAGAACTTGAGTCGTAGACTGAAAGTGACAAGTGATTTGTTTGATATCATGTCTGGTCAGACAGACATTGATCACCCACTATGCGAGGAGTGCACTGACACACTGCTGGACCATCTGGACACACAACTCAGCATTACAGAAAATGAGTGCCAGAATTACAAGAGCTGTTTAGAGTTGCTGTCTCAACTACCTGAAGAGGAGGAGTCTAGACTGCTGAATTCACTGGAGCAGTTGAAACAAGAGGAGGAATCTCTGATCCAGGAGCTGGAGAGCATTGAGGTGCAGCGTGAGGCCGTGGCTAAAGAGCTCGCCCAGGGACGCAATCATAGCCAGCTGATGGACACAGATGAGcttcaGTATCAGAAGGAGTACTGCGAATTTAAGAGACAGCAGCTGGAGCTGGATGATGATCTTAAGAGTGTGGACAATCAAATGCGTTACTGTCAGAGTCAGCTGGACAGACTCAAGAAGACCAACGTTTTCAATGCCACCTTTCATATCTGGCACAGTGGGCAGTTCGGAACAATAAATAACTTCCGCTTAGGCAGATTACCCAGTGTACCAGTGGAGTGGAATGAGATCAATGCAGCCTGGGGTCAAACTGTACTTCTGCTGCATGCACTTGCTAACAAGATGGGACTATGCTTTCAGAGATATCGACTTGTTCCATACGGAAACCATTCCTATTTGGAATCTCTCACAGATAAGTCCAAGGAGCTGCCATTGTATTGCTCAGGTGGTCTACGCTTTTTCTGGGATAATAAATTTGATCATGCTATGGTGGCCTTCCTAGACTGTGTCCAGCAGTTTAAAGATGAGGTGGAGAAGGGTGACACAGGCTTTTGTCTGCCATATAGAATGGATGTGGACAAAGGAAAGATTGAGGACACTGGAGGCAGTGGAGGTTCGTACTCTATTAAGACCCAGTTTAACTCAGAGGAACAGTGGACCAAAGCCCTGAAGTTCATGCTCACTAACCTGAAGTGGGGTCTGGCCTGGGTTTCCTCACAGTTTTACAACCGTTAGAATTCATTTTGACTCTGACACCTGATCAACGACACCAGGAAACCACATTAAATCTTTACAGCACTAAGAGGAGAATTTACCCAATTGaaatctttgtgtgttttttgtgtttgcctATTAATCATTAAATCAGTAATGCAAA
>XM_043253410.1
GCGCTGCAGTCAGCCACTGAAGCTCGACACATCTTTCAACGTTTTAGACAGACTGACTATCCACGAGCTCACAGcTCCATTGTTGACAGTGGCAGCCAATAAACATTCAGAAAGCAGTGAGGGCAGCCGTTTTCCTGAAtctgtgtgtttgttttaggaAACATTTTTGGAGAGCAAACAGGATGGAGTGGCTCGGAAATATATCCCACCCGCAAGgATGATGTCAACCGAAAGCGCAAATAGTTTCACTCTAATTGGAGAAGCTTCAGATGGAGGAACTATGGAGAACTTGAGTCGTAGACTGAAAGTGACAAGTGATTTGTTTGATATCATGTCTGGTCAGACAGACATTGATCACCCACTATGCGAGGAGTGCACTGACACACTGCTGGACCATCTGGACACACAACTCAGCATTACAGAAAATGAGTGCCAGAATTACAAGAGCTGTTTAGAGTTGCTGTCTCAACTACCTGAAGAGGAGGAGTCTAGACTGCTGAATTCACTGGAGCAGTTGAAACAAGAGGAGGAATCTCTGATCCAGGAGCTGGAGAGCATTGAGGTGCAGCGTGAGGCCGTGGCTAAAGAGCTCGCCCAGGGACGCAATCATAGCCAGCTGATGGACACAGATGAGcttcaGTATCAGAAGGAGTACTGCGAATTTAAGAGACAGCAGCTGGAGCTGGATGATGATCTTAAGAGTGTGGACAATCAAATGCGTTACTGTCAGAGTCAGCTGGACAGACTCAAGAAGACCAACGTTTTCAATGCCACCTTTCATATCTGGCACAGTGGGCAGTTCGGAACAATAAATAACTTCCGCTTAGGCAGATTACCCAGTGTACCAGTGGAGTGGAATGAGATCAATGCAGCCTGGGGTCAAACTGTACTTCTGCTGCATGCACTTGCTAACAAGATGGGACTATGCTTTCAGAGATATCGACTTGTTCCATACGGAAACCATTCCTATTTGGAATCTCTCACAGATAAGTCCAAGGAGCTGCCATTGTATTGCTCAGGTGGTCTACGCTTTTTCTGGGATAATAAATTTGATCATGCTATGGTGGCCTTCCTAGACTGTGTCCAGCAGTTTAAAGATGAGGTGGAGAAGGGTGACACAGGCTTTTGTCTGCCATATAGTCGCTTCAGGATTAATGGTATCTGGATCTTTtgtcacaaaaaaatacaagaagacaaatacatttttgaaccACAAAGGAATGAGCAACAGCTGAATTATTTTGGACATGAATGGATGTGGACAAAGGAAAGATTGAGGACACTGGAGGCAGTGGAGGTTCGTACTCTATTAAGACCCAGTTTAACTCAGAGGAACAGTGGACCAAAGCCCTGAAGTTCATGCTCACTAACCTGAAGTGGGGTCTGGCCTGGGTTTCCTCACAGTTTTACAACCGTTAGAATTCATTTTGACTCTGACACCTGATCAACGACACCAGGAAACCACATTAAATCTTTACAGCACTAAGAGGAGAATTTACCCAATTGaaatctttgtgtgttttttgtgtttgcctATTAATCATTAAATCAGTAATGCAAA
>XR_006252205.1
aaaaattaaaagaagaagagaaagaacgCGTAATTTCCCCTGTTGGCAGTAAACAGGAAGAGCACTGATACTATAAGGAGACGGCTATTGAaagAAAATGGAGGGTTTAAAGTTTTCTAGCAACACTATGCAGGTGAGTTTTGTGTGCCAGCGCTGCAGTCAGCCACTGAAGCTCGACACATCTTTCAACGTTTTAGACAGACTGACTATCCACGAGCTCACAGcTCCATTGTTGACAGTGGCAGCCAATAAACATTCAGAAAGCAGTGAGGGCAGCCGTTTTCCTGAAgaAACATTTTTGGAGAGCAAACAGGATGGAGTGGCTCGGAAATATATCCCACCCGCAAGgATGATGTCAACCGAAAGCGCAAATAGTTTCACTCTAATTGGAGAAGCTTCAGATGGAGGAACTATGGAGAACTTGAGTCGTAGACTGAAAGTGACAAGTGATTTGTTTGATATCATGTCTGGTCAGACAGACATTGATCACCCACTATGCGAGGAGTGCACTGACACACTGCTGGACCATCTGGACACACAACTCAGCATTACAGAAAATGAGTGCCAGAATTACAAGAGCTGTTTAGAGTTGCTGTCTCAACTACCTGAAGAGGAGGAGTCTAGACTGCTGAATTCACTGGAGCAGTTGAAACAAGAGGAGGAATCTCTGATCCAGGAGCTGGAGAGCATTGAGGTGCAGCGTGAGGCCGTGGCTAAAGAGCTCGCCCAGGGACGCAATCATAGCCAGCTGATGGACACAGATGAGcttcaGTATCAGAAGGAGTACTGCGAATTTAAGAGACAGCAGCTGGAGCTGGATGATGATCTTAAGAGTGTGGACAATCAAATGCGTTACTGTCAGAGTCAGCTGGACAGACTCAAGAAGACCAACGTTTTCAATGCCACCTTTCATATCTGGCACAGTGGGCAGTTCGGAACAATAAATAACTTCCGCTTAGGCAGATTACCCAGTGTACCAGTGGAGTGGAATGAGATCAATGCAGCCTGGGGTCAAACTGTACTTCTGCTGCATGCACTTGCTAACAAGATGGGACTATGCTTTCAGAGATATCGACTTGTTCCATACGGAAACCATTCCTATTTGGAATCTCTCACAGATAAGTCCAAGGTGGGTGCCACAGATAACCTTGAGTTTTTAAGGAGCTGCCATTGTATTGCTCAGGTGGTCTACGCTTTTTCTGGGATAATAAATTTGATCATGCTATGGTGGCCTTCCTAGACTGTGTCCAGCAGTTTAAAGATGAGGTGGAGAAGGGTGACACAGGCTTTTGTCTGCCATATAGAATGGATGTGGACAAAGGAAAGATTGAGGACACTGGAGGCAGTGGAGGTTCGTACTCTATTAAGACCCAGTTTAACTCAGAGGAACAGTGGACCAAAGCCCTGAAGTTCATGCTCACTAACCTGAAGTGGGGTCTGG
>XR_006252206.1
aaaaattaaaagaagaagagaaagaacgCGTAATTTCCCCTGTTGGCAGTAAACAGGAAGAGCACTGATACTATAAGGAGACGGCTATTGAaagAAAATGGAGGGTTTAAAGTTTTCTAGCAACACTATGCAGGTGAGTTTTGTGTGCCAGCGCTGCAGTCAGCCACTGAAGCTCGACACATCTTTCAACGTTTTAGACAGACTGACTATCCACGAGCTCACAGcTCCATTGTTGACAGTGGCAGCCAATAAACATTCAGAAAGCAGTGAGGGCAGCCGTTTTCCTGAAgaAACATTTTTGGAGAGCAAACAGGATGGAGTGGCTCGGAAATATATCCCACCCGCAAGgATGATGTCAACCGAAAGCGCAAATAGTTTCACTCTAATTGGAGAAGCTTCAGATGGAGGAACTATGGAGAACTTGAGTCGTAGACTGAAAGTGACAAGTGATTTGTTTGATATCATGTCTGGTCAGACAGACATTGATCACCCACTATGCGAGGAGTGCACTGACACACTGCTGGACCATCTGGACACACAACTCAGCATTACAGAAAATGAGTGCCAGAATTACAAGAGCTGTTTAGAGTTGCTGTCTCAACTACCTGAAGAGGAGGAGTCTAGACTGCTGAATTCACTGGAGCAGTTGAAACAAGAGGAGGAATCTCTGATCCAGGAGCTGGAGAGCATTGAGGTGCAGCGTGAGGCCGTGGCTAAAGAGCTCGCCCAGGGACGCAATCATAGCCAGCTGATGGACACAGATGAGcttcaGTATCAGAAGGAGTACTGCGAATTTAAGAGACAGCAGCTGGAGCTGGATGATGATCTTAAGAGTGTGGACAATCAAATGCGTTACTGTCAGAGTCAGCTGGACAGACTCAAGAAGACCAACGTTTTCAATGCCACCTTTCATATCTGGCACAGTGGGCAGTTCGGAACAATAAATAACTTCCGCTTAGGCAGATTACCCAGTGTACCAGTGGAGTGGAATGAGATCAATGCAGCCTGGGGTCAAACTGTACTTCTGCTGCATGCACTTGCTAACAAGATGGGACTATGCTTTCAGAGATATCGACTTGTTCCATACGGAAACCATTCCTATTTGGAATCTCTCACAGATAAGTCCAAGGTGGGTGCCACAGATAACCTTGAGTTTTTAAGGAGCTGCCATTGTATTGCTCAGGTGGTCTACGCTTTTTCTGGGATAATAAATTTGATCATGCTATGGTGGCCTTCCTAGACTGTGTCCAGCAGTTTAAAGATGAGGTGGAGAAGGGTGACACAGGCTTTTGTCTGCCATATAGTCGCTTCAGGATTAATGGTATCTGGATCTTTtgtcacaaaaaaatacaagaagacaaatacatttttgaaccACAAAGGAATGAGCAACAGCTGAATTATTTTGGACATG

Function

symbol description
becn1 Acts upstream of or within several processes, including autophagy; cellular senescence; and regulation of skeletal muscle tissue regeneration. Predicted to be located in several cellular components, including autophagosome; endosome membrane; and mitochondrial membrane. Predicted to be part of phosphatidylinositol 3-kinase complex, class III, type I and phosphatidylinositol 3-kinase complex, class III, type II. Predicted to be active in phagophore assembly site. Is expressed in brain; intestine; liver; and muscle. Used to study hepatocellular carcinoma. Human ortholog(s) of this gene implicated in Machado-Joseph disease. Orthologous to several human genes including BECN1 (beclin 1).
atg6 Enables small GTPase binding activity. Involved in several processes, including glycophagy; larval midgut cell programmed cell death; and neuron remodeling. Part of phosphatidylinositol 3-kinase complex, class III, type I. Human ortholog(s) of this gene implicated in Machado-Joseph disease. Orthologous to several human genes including BECN1 (beclin 1).

NR:

description
beclin-1 isoform X1

GO:

id name namespace
GO:0006914 autophagy biological_process

KEGG:

id description
K08334 BECN, VPS30, ATG6; beclin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253407.1 True 1693 mRNA 0.44 13 5886952 5953486
XM_043253408.1 False 1583 mRNA 0.45 12 5886952 5953486
XM_043253410.1 False 1561 mRNA 0.45 12 5899838 5953486
XR_006252205.1 False 1441 transcript 0.46 12 5886952 5953312
XR_006252206.1 False 1414 transcript 0.45 12 5886952 5943580

Neighbor

gene id symbol gene type direction distance location
med1 med1 coding upstream 23662 5840203 ~ 5863290 (+)
LOC122355830 tceb2,LOC108280902,LOC107564001,LOC103036770,LOC108427344 coding upstream 121109 5762494 ~ 5765843 (+)
kbtbd2 kbtbd2,LOC107711671,LOC107674719,LOC107660299,LOC107708283,LOC107551836 coding upstream 187046 5691358 ~ 5699906 (+)
si:ch211-217a12.1 si:ch211-217a12.1,LOC107674759,LOC108431403,LOC106590406 coding upstream 202624 5668900 ~ 5684328 (+)
fkbp10b fkbp9,fkbp10b,LOC107674681 coding upstream 265612 5614079 ~ 5621340 (+)
LOC122355059 adprh,LOC108411014,LOC108274007,LOC105894051 coding downstream 371007 6324493 ~ 6391831 (+)
LOC122355310 LOC107569775 coding downstream 628102 6581588 ~ 6583943 (+)
plxdc1 plxdc1,LOC107732187,LOC107566549,LOC107694606 coding downstream 846299 6799785 ~ 6961984 (+)
plcd3b plcd3b,LOC107751666,LOC107561636,LOC107662566 coding downstream 1229944 7183430 ~ 7219444 (+)
nmt1b LOC107561637,LOC107662571,LOC107758416 coding downstream 1272376 7225862 ~ 7233649 (+)
G85774 NA non-coding upstream 65265 5821431 ~ 5821687 (+)
G85713 NA non-coding upstream 284771 5601474 ~ 5602181 (+)
G85687 stat5b,LOC107674616,LOC107556764,LOC107727963,LOC102309899 non-coding upstream 390718 5495107 ~ 5496234 (+)
G85685 NA non-coding upstream 394018 5491714 ~ 5492934 (+)
G85683 ghdc,LOC107556765,LOC107727961 non-coding upstream 401203 5483574 ~ 5485749 (+)
G85905 NA non-coding downstream 4408 5957894 ~ 5958234 (+)
G85967 NA non-coding downstream 144642 6098128 ~ 6098334 (+)
G85971 NA non-coding downstream 147676 6101162 ~ 6118513 (+)
LOC122355060 NA non-coding downstream 376851 6330337 ~ 6336029 (+)
G86033 NA non-coding downstream 570474 6523960 ~ 6524390 (+)
LOC122355829 tgfb1i1 other upstream 70637 5766397 ~ 5816315 (+)
drosha drosha,rnasen,LOC107716466,LOC107727962,LOC107556767 other upstream 440233 5426581 ~ 5446719 (+)
LOC122355392 pnmt,LOC107571312,LOC107676565 other upstream 777906 5081165 ~ 5109046 (+)
G85587 NA other upstream 797314 5088925 ~ 5089638 (+)
G85567 NA other upstream 1433677 4452855 ~ 4453275 (+)
G85962 NA other downstream 142462 6095948 ~ 6096732 (+)
G85986 adprh,LOC108411014,LOC107726130,LOC105894051,LOC108274007 other downstream 261433 6214919 ~ 6216567 (+)
G86019 LOC107570179 other downstream 487335 6440821 ~ 6441526 (+)
G86029 NA other downstream 568343 6521829 ~ 6522571 (+)
G86142 NA other downstream 1349652 7303138 ~ 7304848 (+)

Expression


Co-expression Network