foxn2b (LOC107698833,LOC107749364,LOC107550040,LOC107582787,LOC107728721,LOC107673647)


Basic Information

Item Value
gene id foxn2b
gene name LOC107698833,LOC107749364,LOC107550040,LOC107582787,LOC107728721,LOC107673647
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 10900253 ~ 10915884 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253418.1
GGGGGGTACGGAAGCGTTGCCGTGCGGCGTGATCTCCGCGCTGCGTGGATGGAGGAAGCAGCTGCTGATCTTTTGACACAGCGCGAGCGAAAGGCTACTGCATGAAAGCACGGGAGCTTTGTCGTCGGACGCGACAGTAGAATGCACGAATACCCTCCTGGTTTGATGGGTCCGATAATTGGGATGTCTCCAGATAAGAAAGCCGAATCTCCCGGAGCGCAGGGCGTGTGTGGAGCTGGGACTCTACCTGAAGCAGAGAGCGCTTCCAGTCCCATGGCTACCAGTCTGGACCAGATTGGTCGGGCTGGAGCATTGAGTGTGGTGGCGGGCGAGTCTGAAGATGATGAACTAACCAACCTGAACTGGCTTCATGAGAACTTGCTGCAGAACTTCACGCTCGGAGGCGAAGCGCAACCCATCAACAGTCCGCTGTTTGACATCGAGGGAGGTGGTGGGTCACCACACAGCAACACCGCCTCGTCCACCTCCTCCATCTCTGCGGGAAGCGAGAGAGATCCTTACAAGTCAAAGCctcctttctctttttccttacTGATATACATGGCTATCGAACAGTCGCCCAGCAAATCTCTCCCAGTGAAGGACATCTACGGCTGGATCCTCAAACATTTTCCATATTTCTCCAGCGCCCCTACTGGCTGGAAGAACTCAGTGCGCCATAATCTGTCCCTCAACAAGTGCTTCCGCAAAGTAGAGCGAAGCATAGGAAAGACCAATGGGAAAGGCTCTCTGTGGTGCGTTCACCCCGAGTTCCGGCCCATGCTGATGCAAGCCCTGAAGAAACAGCACTTCCCGAATGCACATGCCTTCTGCACTCCTCCTGCCTCCCCTCCTAGTGCCTCGTCTCCTCCTCATCACCTTTTCACATCCGAGCAGGGCTGTGCCCTAAAAGaatGTGATTTTGATGCTGCCACTGCCATGATGCTGTTAAAGTCTGCCTCTGAGCAGAACATTGACTCGTACCCGGATGATCAAGAAGGACCCATAGATCTCTCCCGAAGGGACCTGGTGGTTGTGAGTCGGGATCCGAAGCAGGATCACAACTACAGCAGCACCCCTGTCCCACCCTGCCCTCGCCAGATGCCTCCTTCACAGCCGGTCAACTTCAGCCTGGCTCTACACCACGATCAGGAGAGAGGAGGCCGGGCCCGATGGCCGCGCAGCCCTCTACAGGGTCCGCTTTTAGGAAAGAGGAGCAGAAGAGATTCTCGTCCAGACGTAGACGAGGAGCTCAAGGAGGCGGCCGGCTCGCTCCTGCATCTGGCCGGCATTCGCACCAGTTTAGTCGCCTCAAGACGCAAGAGCAGGAAACTCAGTAGGAAATGAACCCCTATTCCGTAACTCCATCCTGTGGCCTGCCCAACCTCTCTCTTCTGGTTTGGTCTATCTTCCTTCTTGTTTGTAATTGTTGGggtgttttctttcctttcgTCTTTTTAACTGGGATGACGTTCCCGGACCACTCATCAAACATGGCAATACAAACACAGGAGAGAAAAGCCATactgacatattttatgtacagAAAAAGAAACCAATTTGGATGAACGGCCCACATCATTTGAGTTTAACAGtatgagagtaaaaaaaaattcaacgaGAGAGACactggtaagaaaaaaaaaaaaaaacacttcaagaTTTGCATGCTTCCACCTCTAAATCAACACAAACTTATTTATACGGGAAATGAATGCATGGATTTTACAAGCTCCCAAGATCTCTCACGCTTCTTAACTATAGACggaaaaagcttaaaaaaaaaaaaaaaaaagagagaaatatatgAAAGTGCCATTGATTTTGGATCATAATATAAACATGATACAAAAGAAGAAATGCAATAATTAGTTGACCTAAATAtctgtagttattttatttttgtactgctggtTTATATCTTGTGTGGTGGTGACGGCATGCCCCTGGGAGCCTTTTGCTGCCGCAGTTATGATGTCAAAACCATGTGACTCCTCCCGTGCATCCTGATTGGATCAATTTTGCATCCCCATCCTGACCACTATGACTGGAGAACAGCTTGAAGGAAACGGCTTTTTGTTGCATGCACATCAGCCTCAGTGTTTCTCAGATGCTAGCGATCAGGTGTTGTGCTATTCCACACGCACTGACTTGATTAAATCATTACCCGTGTGCATATTGCTTGCTTTCGGAGCATACTAAATAGCGGCCAATCAAAACAAGAACCTCTTACCTCTACTAAAGGATTTGAACCACTCTTTCCCTTTCCCGCTCCTTGACTTTACGTTGGCAAGTGTCACATCTGCCCAAATCAGGCCTTTGTCATCTTTTTCTTGGTTTAAACTGCGCGTGACGAAGCCTCCAGTAGAGGGGGCTCTGTGAAACGCCACATCTCTCCATTGCTGCTTTCGAGCTATGAGCTGGCGCCGCGCTGCTCCAGACCTCCAGAGAGTTCAGAAGAAACCAGAGACAATGTGAACTGCACAATAAATGCCCCTGCAAGCGGAGACAAAGACACTCTCCCATCGCTGCAGGTCACGGACGGTGCTGATCATGGGAGAAAGGATCACAGGAAGTGAAACAGAGTGGACAGTATATTGGGAGAACCAACTGAGATCTGTGCCATTAAAGAACTCTCTGGACTCCCGGCCATTTTTaacccagtttttttttttttttttttttttttctcgtccCCTTTGAGATCGCCAAAGTTGCTGCTCACAAAACTTGCCTGGCTGTGTGTTCCtaatagtttgtttgtttatgattgggtttttaagtgtttgtttgagGCTACATTAGGATTTTATATACCCGAGCATGTGAAATTGTAAACTATAACTGCCACTTGCCCCTTTACACTGGCAAACCAGAACGTTCTGTTCGAGTTGATTACTTTAAAACTGCCTGTCCTTGTGAAGCTCTTTCCCTGTCACTTTAACCATGGCTGCCAATTTGTCCCCTCCTAGCTGTACATAGTGCTAATACAGAATGCAAGTATTAATGCAGGGAGGGGAGCCAAGCAGTAGTTTTAGAATTTGAGGCCAATTCTGAAAACAGCTGCctatgaattattatattactattattattgttattattattaagataaGGTCCACTAACTGAGTTGCCACTTCCCCATCAATTCTGTCATGTTCTTCTGCCAAATGTGGCAGCTGAACctgatttttgattttgtaaGCTAACCTCTGTTAATAAAAGgtttataaagtttatttttgccAAAGATATGCAATTGTTGCATTATATATGGtattaaagaataaaagagttttttctttta
>XM_043253419.1
GGGGGGGTACGGAAGCGTTGCCGTGCGGCGTGATCTCCGCGCTGCGTGGATGGAGGAAGCAGCTGCTGATCTTTTGACACAGCGCGAGCGAAAGGCTACTGCATGAAAGCACGGGAGCTTTGTCGTCGGACGCGACAGTAGAATGCACGAATACCCTCCTGGTTTGATGGGTCCGATAATTGGGATGTCTCCAGATAAGAAAGCCGAATCTCCCGGAGCGCAGGGCGTGTGTGGAGCTGGGACTCTACCTGAAGCAGAGAGCGCTTCCAGTCCCATGGCTACCAGTCTGGACCAGATTGGTCGGGCTGGAGCATTGAGTGTGGTGGCGGGCGAGTCTGAAGATGATGAACTAACCAACCTGAACTGGCTTCATGAGAACTTGCTGCAGAACTTCACGCTCGGAGGCGAAGCGCAACCCATCAACAGTCCGCTGTTTGACATCGAGGGAGGTGGTGGGTCACCACACAGCAACACCGCCTCGTCCACCTCCTCCATCTCTGCGGGAAGCGAGAGAGATCCTTACAAGTCAAAGCctcctttctctttttccttacTGATATACATGGCTATCGAACAGTCGCCCAGCAAATCTCTCCCAGTGAAGGACATCTACGGCTGGATCCTCAAACATTTTCCATATTTCTCCAGCGCCCCTACTGGCTGGAAGAACTCAGTGCGCCATAATCTGTCCCTCAACAAGTGCTTCCGCAAAGTAGAGCGAAGCATAGGAAAGACCAATGGGAAAGGCTCTCTGTGGTGCGTTCACCCCGAGTTCCGGCCCATGCTGATGCAAGCCCTGAAGAAACAGCACTTCCCGAATGCACATGCCTTCTGCACTCCTCCTGCCTCCCCTCCTAGTGCCTCGTCTCCTCCTCATCACCTTTTCACATCCGAGCAGGGCTGTGCCCTAAAAGACCCGGATGATCAAGAAGGACCCATAGATCTCTCCCGAAGGGACCTGGTGGTTGTGAGTCGGGATCCGAAGCAGGATCACAACTACAGCAGCACCCCTGTCCCACCCTGCCCTCGCCAGATGCCTCCTTCACAGCCGGTCAACTTCAGCCTGGCTCTACACCACGATCAGGAGAGAGGAGGCCGGGCCCGATGGCCGCGCAGCCCTCTACAGGGTCCGCTTTTAGGAAAGAGGAGCAGAAGAGATTCTCGTCCAGACGTAGACGAGGAGCTCAAGGAGGCGGCCGGCTCGCTCCTGCATCTGGCCGGCATTCGCACCAGTTTAGTCGCCTCAAGACGCAAGAGCAGGAAACTCAGTAGGAAATGAACCCCTATTCCGTAACTCCATCCTGTGGCCTGCCCAACCTCTCTCTTCTGGTTTGGTCTATCTTCCTTCTTGTTTGTAATTGTTGGggtgttttctttcctttcgTCTTTTTAACTGGGATGACGTTCCCGGACCACTCATCAAACATGGCAATACAAACACAGGAGAGAAAAGCCATactgacatattttatgtacagAAAAAGAAACCAATTTGGATGAACGGCCCACATCATTTGAGTTTAACAGtatgagagtaaaaaaaaattcaacgaGAGAGACactggtaagaaaaaaaaaaaaaaacacttcaagaTTTGCATGCTTCCACCTCTAAATCAACACAAACTTATTTATACGGGAAATGAATGCATGGATTTTACAAGCTCCCAAGATCTCTCACGCTTCTTAACTATAGACggaaaaagcttaaaaaaaaaaaaaaaaaagagagaaatatatgAAAGTGCCATTGATTTTGGATCATAATATAAACATGATACAAAAGAAGAAATGCAATAATTAGTTGACCTAAATAtctgtagttattttatttttgtactgctggtTTATATCTTGTGTGGTGGTGACGGCATGCCCCTGGGAGCCTTTTGCTGCCGCAGTTATGATGTCAAAACCATGTGACTCCTCCCGTGCATCCTGATTGGATCAATTTTGCATCCCCATCCTGACCACTATGACTGGAGAACAGCTTGAAGGAAACGGCTTTTTGTTGCATGCACATCAGCCTCAGTGTTTCTCAGATGCTAGCGATCAGGTGTTGTGCTATTCCACACGCACTGACTTGATTAAATCATTACCCGTGTGCATATTGCTTGCTTTCGGAGCATACTAAATAGCGGCCAATCAAAACAAGAACCTCTTACCTCTACTAAAGGATTTGAACCACTCTTTCCCTTTCCCGCTCCTTGACTTTACGTTGGCAAGTGTCACATCTGCCCAAATCAGGCCTTTGTCATCTTTTTCTTGGTTTAAACTGCGCGTGACGAAGCCTCCAGTAGAGGGGGCTCTGTGAAACGCCACATCTCTCCATTGCTGCTTTCGAGCTATGAGCTGGCGCCGCGCTGCTCCAGACCTCCAGAGAGTTCAGAAGAAACCAGAGACAATGTGAACTGCACAATAAATGCCCCTGCAAGCGGAGACAAAGACACTCTCCCATCGCTGCAGGTCACGGACGGTGCTGATCATGGGAGAAAGGATCACAGGAAGTGAAACAGAGTGGACAGTATATTGGGAGAACCAACTGAGATCTGTGCCATTAAAGAACTCTCTGGACTCCCGGCCATTTTTaacccagtttttttttttttttttttttttttctcgtccCCTTTGAGATCGCCAAAGTTGCTGCTCACAAAACTTGCCTGGCTGTGTGTTCCtaatagtttgtttgtttatgattgggtttttaagtgtttgtttgagGCTACATTAGGATTTTATATACCCGAGCATGTGAAATTGTAAACTATAACTGCCACTTGCCCCTTTACACTGGCAAACCAGAACGTTCTGTTCGAGTTGATTACTTTAAAACTGCCTGTCCTTGTGAAGCTCTTTCCCTGTCACTTTAACCATGGCTGCCAATTTGTCCCCTCCTAGCTGTACATAGTGCTAATACAGAATGCAAGTATTAATGCAGGGAGGGGAGCCAAGCAGTAGTTTTAGAATTTGAGGCCAATTCTGAAAACAGCTGCctatgaattattatattactattattattgttattattattaagataaGGTCCACTAACTGAGTTGCCACTTCCCCATCAATTCTGTCATGTTCTTCTGCCAAATGTGGCAGCTGAACctgatttttgattttgtaaGCTAACCTCTGTTAATAAAAGgtttataaagtttatttttgccAAAGATATGCAATTGTTGCATTATATATGGtattaaagaataaaagagttttttctttta

Function

NR:

description
PREDICTED: forkhead box protein N2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09407 FOXN; forkhead box protein N

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253418.1 True 3307 mRNA 0.47 6 10900253 10915883
XM_043253419.1 False 3239 mRNA 0.47 5 10900253 10915884

Neighbor

gene id symbol gene type direction distance location
chac2 chac2,LOC107749368,LOC107686371 coding downstream 286751 10610648 ~ 10613502 (-)
LOC122355804 nrg3b,LOC107566665,LOC107573948,LOC107678479,LOC107689960 coding downstream 755524 10138438 ~ 10144729 (-)
LOC122355287 fam20cb,fam20c,LOC107734234,LOC107699871,LOC107669229,LOC107731385,LOC108432010 coding downstream 1094743 9788025 ~ 9805510 (-)
LOC122355272 cpped1,LOC107584109,LOC107669238,LOC107554009 coding downstream 1144206 9743392 ~ 9756047 (-)
LOC122355289 ercc4,LOC107734247,LOC107669240,LOC107692079 coding downstream 1159725 9734537 ~ 9740528 (-)
fbxo11b fbxo11b,fbxo11,LOC107728720,LOC107582786,LOC107550041,LOC107673644,LOC107698831,LOC108430631 coding upstream 2895 10918779 ~ 10931157 (-)
msh2 msh2,LOC107698830,LOC107582784,LOC107749362,LOC107550043,LOC107728724,LOC107673650 coding upstream 15978 10931862 ~ 10938013 (-)
socs5a LOC107582782,LOC107728716,LOC107698827,LOC107673648,LOC107550046,LOC107749358,LOC107550045 coding upstream 69158 10985042 ~ 10996581 (-)
rhoq rhoq,LOC107550049,LOC107582780 coding upstream 96588 11012472 ~ 11027430 (-)
kcng3 kcng3,LOC107749354,LOC107728707,LOC108273984,LOC107698800,LOC108430560 coding upstream 133795 11049679 ~ 11054806 (-)
G87406 fshr,LOC107728706,LOC107582855,LOC107673646 non-coding downstream 4106 10895841 ~ 10896147 (-)
LOC122355137 NA non-coding downstream 5536 10868848 ~ 10894717 (-)
G87376 NA non-coding downstream 35657 10816561 ~ 10864596 (-)
G87388 NA non-coding downstream 95515 10793063 ~ 10804738 (-)
G87164 NA non-coding downstream 294234 10605232 ~ 10606019 (-)
G87429 mta3,LOC107749351,LOC105904126 non-coding upstream 155365 11071249 ~ 11071765 (-)
G87449 NA non-coding upstream 193012 11108896 ~ 11165039 (-)
G87450 NA non-coding upstream 208563 11124447 ~ 11126279 (-)
G87409 NA non-coding upstream 343133 11259017 ~ 11298534 (-)
G87482 NA non-coding upstream 355857 11271741 ~ 11273302 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other downstream 960404 9311653 ~ 9939849 (-)
ormdl3 ormdl3,LOC107723636,LOC107657273,LOC107556587,LOC108273759,LOC102217224,LOC106521946,LOC102783025,LOC105936292,LOC107092838 other downstream 1410941 9481559 ~ 9489312 (-)
LOC122355288 LOC107660874 other downstream 2022122 8875617 ~ 8878131 (-)
trnar-ccu_66 NA other downstream 2212683 8687498 ~ 8687570 (-)
plbd1b LOC107578697 other downstream 2212705 8682443 ~ 8687548 (-)
cript cript,LOC107582781,LOC107728714 other upstream 89122 11005006 ~ 11006954 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other upstream 127004 11042888 ~ 11045889 (-)
G87489 NA other upstream 405539 11321423 ~ 11322603 (-)
G87569 NA other upstream 916995 11832879 ~ 11835612 (-)
G87608 NA other upstream 1032656 11948540 ~ 11951155 (-)

Expression


Co-expression Network