LOC122355310 (LOC107569775)


Basic Information

Item Value
gene id LOC122355310
gene name LOC107569775
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 6581588 ~ 6583943 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253421.1
tctccctctctatctCCCTCTCTTACGTCTCTTACAGGTAGCTCCTCcctttctctaaaaaaaaaggagaagaaaagaagcaAGGACCGCCTGTTACAGGAGAACGAAACGCCCAGCTATCCCTTCTTCCTGTTCTGTGTTGTCTTCTGTTCTCTGTCGTCCTGTGTGTGGTTACTAATTGTCTCCCCAGAAACGCCAGTTAGAAGCACACCCACCAGAGGATTACAGTCACAGAGAACCACACCCACCTGACACCTCACATTTAGCATCAACTGACACCAAACATCTACACCTCTGTCTTTCCTTGCTGTTGTCTGTTCTGCCTTGTTTGgttgttattttcttccagGTCTGTGTCAGTCACGTTCCCCCTCGCCGCACCAAAACATGTCTCACACAGCAGACAACGTTGGTCACTGGGAAGACCTGGAAACATGGCTAAGTGTTGCAACCAGCAGCCTCCTACCCAAGGCCGCGGAAACACTAAAGCATCAGACCCAGGAACAGCTGGATGACAACCTAACAAGCCTAATGAAACAGGACCCAAGCCAAGGCTACAACAACAAAGAGCTAGCAAAGATCACCGCTCCTAAGTCACACCTCATCGCTACCCTCAAACTGAGTGACAGGCGCGCCGCCGATCTCCAACAGGAGCTGACATGCGCACAGCGACGCATCAAACAGCTGGAACTGGAGGCTCAGGAACAACAGGAAAAGCTGGATGAGGAGAGAAAGGACCCAGAGGAGATCACCACGCTCAAAGCCTTGCTAGCAGCTTCCACACAAGaggtgaaacaaaccaaaagagacTTTGACAATGCTGCCAACAACCTCCAGTACGCAGAACAGCTACTGGAGAAGGCAAAGACTGACATTAGAGACAAGGCCGGCAGAATCAAAGCCCTCGAAGCTCACTTGAACGAGTCAAGGAATCAGATCAGCCGCCTAGAACAACAGCTGGACTACGTCAAAGAGGAATCCGACGGTGTCAAGGAGGAACTCAGACACGCCTACGACCTGCGCGCTGAGCCACCGAGGACACGAGAGGCACCAACGTCACCCCTGCCAACCAGCCAAAGAGCATCACACGGCCTGGACCTAAAAGACCTAGACAAGATCGCCAGGAACATCGTCAAGTTCACCCCGGGTGTGCCAAGTAGTCCAGACGTTCAAACCTATCTGCAGGACGTCGAATTCCATCTGGAAGTAAGACCTCACGTCACTGATAAAGATAGACTCTATTTACTGCGAGCAACATCAAGCCCTGATGTACGCAGCTTCCTGGACCGGCAACCAGCCCAGACAAAGGCTGATTACCATCTGCTCCGAGAGGCTCTCATCAAGGAATTTGATGACCCCGAGTCAGAACAAGGACTAGTAGCCGCCCTGGAGATCAGACAAGGCCGTCATGAGTCTCCGCAAGCCTACTACAGCCGACTCAGGAGAGCATACTTCGGAACTCGCAACGAGCCCGAAATGGAACAGGACATGAACTTTAAGACTCTCTTTCTCAGGAACCTACATCCTGGGGTAAGCCACCATCTAGGCGTGCTAGCATGTCCGCGCACAATGACCATTCAGCAGCTGCGCGACTTAGCACACAAAGCCTACAGCAAACAAAAGATGGCTGCAGAGAAAGGCGCTAAAGCTCCGACGGTCCTCGACTTCAACACACAAAGTCACGGACTGCCTCTAGAGGGTGCCCAACATCAAGACAGCTTCAAGCCGTCAAGAAAAGAGTGGAACGCGTCCAACAGAGAGCAAGACTTCCACGCAGGTACCAGACCCAAGCAGAGAAACGGCCGCTGGGATGGACCACGTGAACGACAGCGCTCGCCTGGACGCCACTGGGAAAAATCGTGGAATCAGTCAACCTCCTTTAGAAACCAAAGGGGGAAGAGCTCCTGGGATGGCAACGGAACCTCCATGggtagagcacaaacacaccctgGAGCAACCAGCCCAAGGACTCGACGAAAGAACTTTCAAACTGAATCCACACACGAGCAAAAGACATCACCGTTTTTTTACTCACAAGAACTGATGAAGAGCATGATGAGAGAGTTTTTCCAGCAAATGAAGGAAGATTGGAagtgggaaaagaaagagaagccgGATTCAGCCTGACTGGCAGCCGGACGAGACAGCAGCGACCACCCGACCCAACCAGACACAGAGAATAGCACT

Function

NR:

description
PREDICTED: uncharacterized protein LOC107569775

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253421.1 True 2187 mRNA 0.52 4 6581588 6583943

Neighbor

gene id symbol gene type direction distance location
LOC122355059 adprh,LOC108411014,LOC108274007,LOC105894051 coding upstream 189757 6324493 ~ 6391831 (+)
med1 med1 coding upstream 718298 5840203 ~ 5863290 (+)
LOC122355830 tceb2,LOC108280902,LOC107564001,LOC103036770,LOC108427344 coding upstream 815745 5762494 ~ 5765843 (+)
kbtbd2 kbtbd2,LOC107711671,LOC107674719,LOC107660299,LOC107708283,LOC107551836 coding upstream 881682 5691358 ~ 5699906 (+)
si:ch211-217a12.1 si:ch211-217a12.1,LOC107674759,LOC108431403,LOC106590406 coding upstream 897260 5668900 ~ 5684328 (+)
plxdc1 plxdc1,LOC107732187,LOC107566549,LOC107694606 coding downstream 215842 6799785 ~ 6961984 (+)
plcd3b plcd3b,LOC107751666,LOC107561636,LOC107662566 coding downstream 599487 7183430 ~ 7219444 (+)
nmt1b LOC107561637,LOC107662571,LOC107758416 coding downstream 641919 7225862 ~ 7233649 (+)
svild LOC107758427,LOC107675649,LOC107561632 coding downstream 649995 7233938 ~ 7292140 (+)
znf281b LOC107727698,LOC107584153,LOC107661093,LOC107594149 coding downstream 782391 7366334 ~ 7374805 (+)
G86043 NA non-coding upstream 7462 6573914 ~ 6574126 (+)
G86038 NA non-coding upstream 11620 6569713 ~ 6569968 (+)
G86037 NA non-coding upstream 12134 6569223 ~ 6569454 (+)
G86033 NA non-coding upstream 57198 6523960 ~ 6524390 (+)
LOC122355060 NA non-coding upstream 245559 6330337 ~ 6336029 (+)
G86045 LOC101886504,LOC101886427 non-coding downstream 84981 6668924 ~ 6669449 (+)
G86046 LOC101886504,LOC101886427 non-coding downstream 86371 6670314 ~ 6671334 (+)
G86047 NA non-coding downstream 89397 6673340 ~ 6674070 (+)
G86095 NA non-coding downstream 423884 7007827 ~ 7009178 (+)
G86097 NA non-coding downstream 427245 7011188 ~ 7011412 (+)
G86029 NA other upstream 59017 6521829 ~ 6522571 (+)
G86019 LOC107570179 other upstream 140062 6440821 ~ 6441526 (+)
G85986 adprh,LOC108411014,LOC107726130,LOC105894051,LOC108274007 other upstream 365021 6214919 ~ 6216567 (+)
G85962 NA other upstream 484856 6095948 ~ 6096732 (+)
becn1 becn1,atg6 other upstream 628102 5886952 ~ 5953486 (+)
G86142 NA other downstream 719195 7303138 ~ 7304848 (+)
G86143 NA other downstream 723981 7307924 ~ 7308229 (+)
LOC122355675 NA other downstream 1231880 7815823 ~ 7844083 (+)
msrb1b msrb1b,LOC100705913 other downstream 1521205 8105148 ~ 8106780 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other downstream 1612021 8195964 ~ 8197904 (+)

Expression


Co-expression Network