papss2b (papss2b,papss2,LOC107680272,LOC107753426,LOC107724695,LOC107584134,LOC107594166,LOC107669161)


Basic Information

Item Value
gene id papss2b
gene name papss2b,papss2,LOC107680272,LOC107753426,LOC107724695,LOC107584134,LOC107594166,LOC107669161
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7747592 ~ 7754731 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253457.1
TGATCAGCGCACGTTGATCTGATGGTGGGAGGATTTCAGGAAGAGCGCTGAGTGCTACGTGTCCAACACGTCCTGACTCCCACCAACTTTACTTTTACTCCGTGAGCTCTCCAGGGTCTCGTCTTTAGAAAGCCTCGGCGCATCATGTCTGGGATGAAAAAGCAAAGAACGGATCTGCAGAGAGCTACCAATGTTGTGTACCAGGCTCACCACGTGAGCAGAAGCAAGCGTGGCCAGGTGGTTGGGACCAGAGGCGGATTTCGTGGATGTACTGTCTGGCTGACAGGGCTGTCTGGTGCTGGAAAGACTACAATTGGATTTGCTCTTGAGGAATATCTAGTGTCTCATGCCATTCCTTGCTACTCGCTCGATGGTGACAATATTCGACACGGCCTGAATAAGAACTTGGGCTTCACGGCCACAGACAGGGAAGAGAACATCCGACGTATTGCTGAGGTGGCCAGATTGTTTGCTGATGCTGGACTGGTTTGCATCACCAGTTTCATTTCTCCATTTACAAAGGATCGAAACGACGCCAGGAAGATCCATGAAAGCGCAGGTCTGCCGTTCTTTGAGGTGTTTGTAAATGCCCCTCTGGAGCTGTGCGAGAGCAGAGACGTCAAAGGACTTTATAAAAAAGCCCGTGCTGGAGAGATTAAAGGTTTTACGGGAATAGACTCTGACTATGAGAAACCTGAAGCCCCTGAGCTtgtactgaagactggagaactCACTGTCAATGACTGCATTCAGCAGCTAGTGGATCTCTTGAAGGAACAGGATATTGTGCCCACTGGCGTGACAGAAGAAGTGAATGAGCTCTTTGTTCCTGAAAACAAGCTGGACCTGGTGCTGAGTGATGCCAATATACTCCCCACTTTAACCATCACAGAGCTGGATTTACAATGGATACAGGTTCTATCCGAGGGCTGGGCGACTCCACTGAGGGGATTTATGAGGGAGAGGGAATTCCTTCAAGTCTTGCACTTTGGAACTTTGCTTGATGgTGGAGTCATCAACATGTCTGTTCCCATTGTCCTGCCTGTATCCAAAGATGACAAAGAGAAGATGGATGGTTGTGCTGCTTTTGCCCTGGAGTTCAAAGGTCAAAAGGTGGCAATCATGCGCAACCCTGAGTTTTATGAGCATCGTAAAGAAGAGAGATGTGCCAGGCAGTGGGGGACAACATGTCCCAAACATCCATACATCAAGATGGTAATGGAGAGTGGTGATTGGCTGGCTGGTGGAGACCTGGAGGTGTTTGAGAGAATTAGGTGGAATGATGGTCTTGACCAGTACCGTCTCACTCCACGAGAGCTTAGACAGAAATTTAAAGAAATGAGAGCAGATGCCATTTTTGCATTCCAGTTGCGTAATCCTGTGCACAACGGCCACGCGCTCCTGATGCAGGACACTAAGCGTCATCTGTTAGAGCGAGGCTACAAAAAGCCTGTGCTTCTGCTGCATCCTCTGGGTGGCTGGACAAAAGAGGACGATGTACCTCTGGACTGGCGCATGAAACAGCATGCTGCTGTTTTGGATGAAGGAGTGCTGGATCCTGAAAACACCATTGTGGCCATTTTCCCCTCACCCATGATGTATGCTGGGCCTACAGAGGTGCAGTGGCATTGTCGAGCTAGGATGATTGCAGGGGCCAACTTTTACATTGTAGGACGAGACCCAGCTGGTATGCCCCATCCAGAGACAAAGAAGGACCTGTATGAGCCCACACATGGTGGAAAAGTGCTGACCATGGCACCAGGCCTTACCTCACTTGAGATCATTCCTTTCAGAGTTGCTGCATACAACAAAGTTCAGAAGGCCATGGACTTCTATGACAAGGAAAgACATGCTGAATTTGAGTTCATCTCTGGGACCAAAATGCGGAGCCTTGCCCGCAGCGGGGAGAACCCCCCGGATGGTTTCATGGCCCCAAAAGCGTGGAAAGTACTAGCTGAATACTACAGTTCTCTGCAGAAGGACCAGTGAACATGAGGCTGTGGACTGTATATGGAGACATACAGTGAAGCTCTTTATAACTTATTTCATTAGAACTGATAGAAATaggtttataaaaatatatgcattatatactACAGTCCTACATttgtagtaatattaaaaaaaatctttattagactcatttttagataaatgctATCTATATTTATGCCCTGCAAATTACTTCAAAATGCAGTATAATATCTTGTTCCCTGAGATCACCCtatataaaaagcatatatGGATTAAACTACACAGCTACTGCTGTTTCAATGGTGTTTTATACTTATAGTTGGATGAAGCAGATCAAAGTATGCCTGACAGTAATAGGACCGATATTTTTCCTACCTCAACTGGAGCTTTATTTGTTCGTCTTGGCAGTATTTTCACCAGAGGAGAACATCTTATATTCATTGTAGATACAGAATAATTCTATAACATTGTTTAtacgaattaaaaaaaacaaatgttcagtACTGGCAGCAGAGTATAACCTCAATCAAATGTATTTGACATAAACACAATATTGTCTCGCAGTGCACTTCAGTGCgccttttaatgtaaatgtggcATTGTTACGTTCCCAAATGAACAGGTTACTGTAAAAAAGCGATGGATGAATGTGAAAGGTTTGTGCTGAATGCATAAACATAAGACTCTTGAGGAATCCAATGTGAAGGAACAAGAGCATATTTATTGTCTTACCATTTTCTTAACGGACCAGCCtaacatatttattatcttACAGGAAATGTATTTACTTCCCTCTTTTTTGTACAAACTTGTgagatttacattttgtcatttcttaCAATATTTGATGTAATGAGCGTTGGGCAGGCATTCCAATAAACTTCCTTAAGACAAAA

Function

symbol description
papss2b Predicted to enable adenylylsulfate kinase activity and sulfate adenylyltransferase (ATP) activity. Predicted to be involved in 3'-phosphoadenosine 5'-phosphosulfate biosynthetic process and sulfate assimilation. Is expressed in several structures, including digestive system; mesoderm; pectoral fin; pectoral fin bud; and sensory system. Human ortholog(s) of this gene implicated in spondyloepimetaphyseal dysplasia, Pakistani type. Orthologous to human PAPSS2 (3'-phosphoadenosine 5'-phosphosulfate synthase 2).
papss2 Predicted to enable adenylylsulfate kinase activity and sulfate adenylyltransferase (ATP) activity. Predicted to be involved in 3'-phosphoadenosine 5'-phosphosulfate biosynthetic process and sulfate assimilation. Predicted to act upstream of or within blood coagulation and bone development. Predicted to be located in cytosol. Implicated in spondyloepimetaphyseal dysplasia, Pakistani type.

NR:

description
bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2-like isoform X1

GO:

id name namespace
GO:0000103 sulfate assimilation biological_process
GO:0016310 phosphorylation biological_process
GO:0004781 sulfate adenylyltransferase (ATP) activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004020 adenylylsulfate kinase activity molecular_function

KEGG:

id description
K13811 PAPSS; 3'-phosphoadenosine 5'-phosphosulfate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253457.1 True 2870 mRNA 0.44 12 7747592 7754731

Neighbor

gene id symbol gene type direction distance location
ptenb pten,ptenb,LOC107669198,LOC107584135,LOC107594163 coding downstream 12347 7720387 ~ 7735245 (-)
lipf lipa,lipf,LOC107753430,LOC107584137,LOC107594160,LOC107758444 coding downstream 84861 7651748 ~ 7662731 (-)
stambpl1 stambpl1,LOC107594159,LOC107758441,LOC107669191,LOC107683716,LOC107584140 coding downstream 100801 7636843 ~ 7646791 (-)
ifit9 LOC107669232,LOC107753434,LOC107584193 coding downstream 133225 7612135 ~ 7614367 (-)
ifit10 LOC107584141,LOC107753434,LOC107669232,LOC107758418,LOC107594210,LOC107683722 coding downstream 135600 7609394 ~ 7611992 (-)
minpp1b minpp1b,LOC107669175,LOC107753454,LOC107753455 coding upstream 126 7754857 ~ 7760517 (-)
usp42 usp42,LOC107753425,LOC107669212,LOC107724691,LOC107584191 coding upstream 23565 7778296 ~ 7789396 (-)
eif2ak1 eif2ak1,LOC107753420 coding upstream 34856 7789587 ~ 7795766 (-)
dlgap5 LOC107669214,LOC107584128,LOC107699863 coding upstream 52931 7807662 ~ 7815339 (-)
ccz1 ccz1,LOC107584127,LOC107699864,LOC107753422,LOC107669215,LOC107594171 coding upstream 61284 7816015 ~ 7824303 (-)
G86357 NA non-coding downstream 39398 7707860 ~ 7708194 (-)
G86356 NA non-coding downstream 42109 7705221 ~ 7705483 (-)
G86354 NA non-coding downstream 48578 7698665 ~ 7699014 (-)
G86333 acta2,zgc:86709,actc1a,actc1,ACTC1,LOC107594158,LOC103374497,LOC108414322,LOC106531354,LOC107683715 non-coding downstream 111448 7634638 ~ 7636144 (-)
G86334 NA non-coding downstream 113036 7631396 ~ 7634556 (-)
G86375 NA non-coding upstream 91750 7846481 ~ 7846832 (-)
G86412 NA non-coding upstream 133235 7887966 ~ 7888246 (-)
G86413 NA non-coding upstream 135572 7890303 ~ 7891221 (-)
G86458 NA non-coding upstream 300037 8054768 ~ 8055031 (-)
G86516 NA non-coding upstream 356462 8111193 ~ 8112713 (-)
G86203 NA other downstream 358682 7388236 ~ 7388910 (-)
G86108 NA other downstream 643374 7103880 ~ 7104218 (-)
G86049 LOC101886504,LOC101886427 other downstream 1076345 6670319 ~ 6671247 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other downstream 1669524 6051168 ~ 6078068 (-)
G85930 LOC107711793,LOC107755027 other downstream 1735481 5990913 ~ 6012111 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other upstream 579673 8334404 ~ 8359992 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other upstream 756672 8511403 ~ 8513265 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other upstream 855821 8610552 ~ 8612445 (-)
plbd1b LOC107578697 other upstream 927712 8682443 ~ 8687548 (-)
trnar-ccu_66 NA other upstream 932767 8687498 ~ 8687570 (-)

Expression


Co-expression Network