atad1b (atad1,atad1b,LOC107680273,LOC107669218)


Basic Information

Item Value
gene id atad1b
gene name atad1,atad1b,LOC107680273,LOC107669218
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7742835 ~ 7747786 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253461.1
cagaagaagaagacgacgacgacgacgaagaagaagaagacgaagcagcagcagcagcagcagcgacAGTAAAAGAATGAgggatgaaaatgtatttttaaaaagtctgttcGCCGGAAGTAAATGAATCGTCGGAAGaagctgcttttttaaaataatatttccagGACCCAGTgataaaacaactaaatagtTGAGgtGAATGCAAGAAGATGGTACTGAAAGAGATTCCAACAGACAATATCACTCGCCCTTTGGGCCGGAACGAAGTAATAGGTTTACTCTTTCGCCTCACAATATTTGGTGCCGtcacatatttcacaataaagtGGATGGTGGATGCTATTGATCCGACGCGAAAACAGAAAGTTGAGGCACAAAAACAGGCAGAAAAACTCATGCGGCAGATTGGAGTTCAAAATGTGAAGCTTTCTGAATATGAGATGAGCATTGCAGCCCATCTTGTGGATCCACTGACTATGCAGATTACGTGGCATGACATCGCAGGTCTGGATGAAGTCATAACCGAATTGAAAGACACTGTTATACTTCCGATCCAGAAGAGACATCTGTTCGAAGGATCCAGGCTTCTTCAGCCACCGAAAGGTGTACTGCTGTATGGGCCTCCGGGCTGTGGGAAAACTCTTATAGCCAAAGCTACTGCCAAAGAGGCTGGGTTCCGCTTCATTAACCTGCAGCCTTCCACTCTCACTGACAAATGGTATGGAGAATCCCAGAAACTAGCTGCAGCCGTGTTTTCACTGGCCATCAAGTTACAACCTTCTATTATCTTCATCGACGAGATCgATTCCTTTTTGAGGAGTCGCTCAAGTTCAGATCATGAGGCCACCGCCATGATGAAGGCTCAGTTCATGAGCTTATGGGACGGACTGGATACCGACTACAATTGCCAGGTCATAATAATGGGAGCCACCAATCGGCCACAAGATCTCGATTCCGCTATACTCCGAAGGATGCCCACAAGATTCCACATCAATCAACCTAATGTCAAGCAGAGGAAAGACATATTAAAACTGATCCTGGAAAATGAGAACgTGGAGTCCGCTGTGGACTTTGGTGAAATCGCAAAACAGACTGATGGGTTCTCAGGAAGTGACCTCAGAGAGATGTGCCGAGATGCTGCTCTGCTTTGTGTGCGTGAATTTGTGCACCAAGAAAGTCCAGATGAAGACTTTATCCGCCCAATCAGACAGGAAGACTTGCAGAGGGCAATCGAGAAGATGAGAAAGTCCAAATCTGCAGGAGTGCAAGAGGTGTTTATGCATGTACCACTGGACTGAATGTGATGctgctttaaaaagaaagaaaaaaaagagaacctAGATTTggtgtttttctctcatttgTAACATATTGTCAAGTTCTGCAAAAGGGGGAACTCAGGATTTATAGAATGGAATTTTTCCTCTAATCTTTTTTGCACTGTAATTTCCATACTAAGTTTTGCCATTTAATCAGTGAgccttataaaaaaattattatttgagaAAACTGTGTAAAGCCATTCTTAAGTAAATTGTCGCTGCAATGGGACAGTTTATAAAAGAATGAAGGattcacattaaaattaattctgcTTGTGTTTCGACAATAAGGCCCATTGTGTTTGTCTTCTTAGGTTTGGTTAGGGTTGTGTGATTTAGTTCCTTAAAACCATGTGATTGGTTTGTGTGTAGATGGGCAACCGTTACTATTTCCAATTATGTAATGCACATATCACCAACATGTAACAATTTAGCTGATTAGTGAGCACAAAAAACAAAGTGTGTTCATTAACAGTTTTAACTTGGATCAGCTTCACCTGTTTGTTTTCCCACAGCGATTGAATGAGTGGATTGAGATgcatttacaaatttataagCCATTTATATCGAATAAGGTGTTTAAGCGTTGTATTTAGCCCAGAGTAGAGGTTATGTGATGGCATGTTGTATagatatttatttgcaaaacctTAAATATGCTTACACAGAATATGTGGGGCCAGTGCCAAGCTGTCGCTGTTAGGTTCGTGTTTGTCTGTCAGGTGTTATTTTGGGGGGGTTGAGTGGGCGAAGGAGACTTGAAGGTGGAAAGAAAAAGTATTCCCTCTGGAGAAAACAGTCTATGGATTGAACAACCATTTTAGATTTCCAGCAATACAATTGTACAGttgtataaaagtatttttaagttaagtttCCAAATTCGCAATAGTCTGCTGCTCTTTTCGGGTCCGAATATGTGTAGAAGTCAGATTGTGTccgaaatgttttgtttacactGTAGAAAAATTGGATGACAACGGTTTTGTCTTAAGGAAGTTTATTGGAATGCCTGCCCAACGCTCATTACATCAAATATTGtaagaaatgacaaaatgtaaatctcACAAGTTTGTACAAAAAAGAGGGAAGTAAATACATTTCCTGTaagataataaatatgttaGGCTGGTCCGTTAAGAAAATGGTAAGACAATAAATATGCTCTTGTTCCTTCA

Function

symbol description
atad1b Predicted to enable ATP binding activity. Predicted to be located in mitochondrial outer membrane; peroxisomal membrane; and postsynaptic membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in hyperekplexia 4. Orthologous to human ATAD1 (ATPase family AAA domain containing 1).
atad1 Predicted to enable ATP binding activity and transmembrane protein dislocase activity. Involved in extraction of mislocalized protein from mitochondrial outer membrane. Located in mitochondrial outer membrane and peroxisomal membrane. Implicated in hyperekplexia 4.

NR:

description
PREDICTED: ATPase family AAA domain-containing protein 1-B-like isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005777 peroxisome cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K22530 ATAD1; ATPase family AAA domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253461.1 True 2503 mRNA 0.40 10 7742835 7747786

Neighbor

gene id symbol gene type direction distance location
rnls rnls,LOC107669231,LOC107584138,LOC107680274,LOC107594162 coding upstream 46106 7663106 ~ 7696729 (+)
ankrd22 ankrd22,LOC107753431,LOC107758445,LOC107584139,LOC107594161 coding upstream 91091 7648181 ~ 7651744 (+)
acta2 acta2,LOC107683715,LOC106531354 coding upstream 106687 7630560 ~ 7636148 (+)
ch25h ch25h,LOC107753436,LOC107584143,LOC107669234,LOC107683723,LOC107758440,LOC107594211 coding upstream 125822 7615839 ~ 7617013 (+)
slc16a12b slc16a12b,LOC107753457,LOC107669179,LOC107584144,LOC107758438,LOC108413683 coding upstream 138281 7597840 ~ 7604554 (+)
cyth3a cyth3a,cyth3,LOC107753449,LOC107669236,LOC107584132,LOC108437157,LOC108258062,LOC107556600 coding downstream 15203 7762989 ~ 7777555 (+)
pms2 pms2,LOC107753423,LOC107594169,LOC107724702 coding downstream 48474 7796260 ~ 7802299 (+)
rsph10b LOC107669165,LOC107584188,LOC107753448 coding downstream 55048 7802834 ~ 7807610 (+)
bhlha15 bhlha15,LOC107669184,LOC107753453,LOC107584229,LOC107594213,LOC107699868 coding downstream 103722 7851508 ~ 7854838 (+)
tmem130 tmem130,LOC107669166 coding downstream 138901 7886687 ~ 7890487 (+)
G86268 NA non-coding upstream 18974 7720392 ~ 7723861 (+)
G86283 NA non-coding upstream 23552 7718984 ~ 7719283 (+)
G86275 NA non-coding upstream 41036 7701343 ~ 7701799 (+)
G86219 NA non-coding upstream 238336 7502578 ~ 7504499 (+)
G86202 NA non-coding upstream 353854 7387668 ~ 7388981 (+)
G86374 NA non-coding downstream 98772 7846558 ~ 7846862 (+)
G86460 NA non-coding downstream 309145 8056931 ~ 8060176 (+)
G86540 NA non-coding downstream 450308 8198094 ~ 8198410 (+)
G86536 NA non-coding downstream 455797 8203583 ~ 8204143 (+)
LOC122355856 NA non-coding downstream 456359 8204145 ~ 8206748 (+)
G86143 NA other upstream 434606 7307924 ~ 7308229 (+)
G86142 NA other upstream 437987 7303138 ~ 7304848 (+)
G86029 NA other upstream 1220264 6521829 ~ 6522571 (+)
G86019 LOC107570179 other upstream 1301309 6440821 ~ 6441526 (+)
G85986 adprh,LOC108411014,LOC107726130,LOC105894051,LOC108274007 other upstream 1526268 6214919 ~ 6216567 (+)
LOC122355675 NA other downstream 68037 7815823 ~ 7844083 (+)
msrb1b msrb1b,LOC100705913 other downstream 357362 8105148 ~ 8106780 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other downstream 448178 8195964 ~ 8197904 (+)
arsg arsg,LOC107734203,LOC107660857,LOC107692046,LOC107554066 other downstream 1088662 8836448 ~ 8852449 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other downstream 1537877 9285663 ~ 9306831 (+)

Expression


Co-expression Network