csnk1db (csnk1db,LOC107566590,LOC107684056,LOC107702480,LOC108435268,LOC103030301,LOC107755503)


Basic Information

Item Value
gene id csnk1db
gene name csnk1db,LOC107566590,LOC107684056,LOC107702480,LOC108435268,LOC103030301,LOC107755503
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 14673204 ~ 14684302 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253470.1
CTGTGACAGTTTCTGCGACGGGGGTCCGCTGTTAAAATCCGTCTCCATCTTCTTTATCCTTGGGGATAACGATGACCAAACCGACGAGAGCATAATCTACAGACTCTAAGCTTTCGCCTGATCACAATATTGTGATATTTCGGACTTCAGTAAATTAGAAAAGGAATGGTGAAAAGTGAACTCCGTCGGAAGAATCCGAATTCTCCTCAGGGATTCGGGGGGGTTGGGGTCGCATAAAGATATATAGGATCGCAGCTGTTAAATAACGCGTAAAAATATTAACGTAAACACGAATTTGAAGGCCGGCCGTTTCTGGGTTTTATAGAAATTAGCTGAAATACAACTAGGGGACTCGTTCGAGAGACACCAGTAAACACAGCGATGGAGCTACGAGTTGGAAACAGATACAGACTGGGTAGAAAAATTGGAAGTGGATCATTTGGAGACATTTATCTGGGCACAGACATTTCAGTTGGAGAGGAAGTGGCCATCAAACTGGAATGTGTGAAGACAAAGCATCCACAGCTCCACATCGAGAGCAAGATTTACAAGATGATGCAGGGTGGAGTTGGCATTCCTACTATAAAGTGGTGCGGTGCAGAAGGAGATTATAACGTGATGGTTATGGAGTTGCTCGGCCCCAGTCTGGAGGATCTCTTCAATTTCTGCTCCAGGAAGTTTAGCCTGAAGACTGTCCTGTTGTTGGCTGATCAGATGATCAGCCGCATTGAGTACATCCACTCCAAAAACTTCATTCACAGAGATGTGAAGCCTGACAACTTTCTGATGGGCTTGGGGAAAAAAGGCAACCTGGTCTACATCATTGACTTTGGACTGGCCAAGAAATACCGTGATGCACGAACACACCAGCACATTCCCTATCGCGAGAACAAGAACCTGACGGGCACTGCACGTTATGCATCCATCAACACACATCTTGGCATTGAGCAGTCTCGGCGGGATGACCTGGAGTCTCTCGGTTATGTGCTGATGTACTTTAACTTGGGCTCGCTGCCTTGGCAAGGACTGAAAGCTGCCACCAAGAGACAGAAGTACGAGCGTATCAGTGAAAAGAAGATGTCCACCCCCATTGAAGTTCTCTGCAAGGGCTACCCATCCGAATTTGCTACGTACCTCAACTTTTGCCGATCATTGCGATTTGATGACAAGCCAGACTATTCGTACTTGAGGCAACTCTTCAGGAATCTGTTCCACAGACAGGGCTTTTCCTATGACTACGTGTTTGACTGGAACATGCTTAAATTTGGCGCCAACCGTACAGCAGAGGAGGCGGAACGTGAGAGGAGAGAGCGAGACGAGCGAATGAGGCACAGCAGAAATCCTGCAGCTCGAGGGATCCCAGCAGCCTCGGGCAGACCCCGCCCCACACAAGATGGAGCTCCTCCCACACCCCTCACCCCCACCTCTCACACCGCAAACACATCCTCACCGAGACCAGTCACTGGCATGGAGCGCGAACGGAAGGTCAGCATGCGGCTTCATCGTGGTGCTCCAGTCAACGTGTCGTCCTCGGACCTAACGGGGCGACAAGACACCTCCCGCATGTCCACATCACAGAATAGCATTCCCTTCGATCACCACGGCAAGTAGTTGATCGTCACATCCTTGTGTGAAGGCAGGTGCACCAGATTGTCTCCATGTCCCAGAAGCCTCCACTTTGCAATATGGAGCACGATGGGCAACCTAACTACACACGGCTGATTGACAGCTCTCCACCATCAGCTAATAGATAGGGCGTCAGTCTCTTTCTTCTATTGACCAAACCAAAATGGTGTAGAACCAACCTGACCTCTCTTTGCTTacaggctctctctctctcctcttctctcctcctcttctcatATTTTCTCCCCCACACTCTTTAAATGTTCTCGTGGACATGAGAGCTACAGCCTGTTGCGAATTCACACCAGTGGGTTGACCAATCAGAGACTGGATCAGCCAGCCACACCATTGTCATCTCCTGCATCCTTCCTTCACAGTTCCACTCTTACACATTCAGTGCTGCACAACTTTCTCTGGTTCAGGCTCCTCGCGATTGAGGCTAATGTATCGTCTATGTGGTTTAAATGggtctttttgtttctttgtataCTGaaatttcttttgtattttaaactgGGCAACAGACAAGGCCGTCTGATGGCGTTATGGGTTCACtttaaatctttttctttttttttactcagtgtatttattttttaacatacattttaataacccCCTGTAACTGGTGAGGTTCCTTTCCCATGGTGAAGCTGGTGGTATAGAGTGGACTGACCACAAAGGGGCCAAAATCTCAGCCTACATTGCTCATAGCAAACTGACTCCAAAGCGTGGTTTTCACTCGTACACGTCCTCACAGAGGGACCCTGTGAACCTCGCCTGTTTGTCTGCTATATTGATCTCTTTAACTGTACAATACTGCCTCCCCCCATTATTGTGTCTTCTGTTTCTAAGCTGtgaaataactgtaaaataatcgTGTAAATGTTTCCATTCAACTGTTTAGAAAGACTATGAAATGACCACAGATGGTTTGAGTCTGAAAGTTATCACCAGTTATTTTTATCCACTCTTTCATAAAGCCACAACAATGAAGTGCCAGACTTTGGGGGTTTTGTGCATTCTGAACTTGAACTTTGACTTGAGGGTTGTCGTTTGACTCCTAAACATCATGATGTGTCTTCTGAAAAGGTTGGTTGTGCTTCGCTGCAAGTTTGTGTTTGGATGGTTCAGGTGGTGCTTTGGAAGTGAAAAGTAATTTGTTGGAGATAGCGATTCACTTTGCTATGGTGGAAAGAATGAAAACATATCAAAGTCTTGCTCTGATGTTTAGTGTTCCCcttttacaaaatattctaGCACTGATGTGGCTTTTGTAATGCACCTTGAAAGCTGGTATGGTCATCTTGTTCCCTTGTCATCTGTAGGGGACATTGGCAAATTCCTGGGTAAAATTTTTCATCTAATTTTCCCCTAATCTGAAGCCCATGGCTGCTTTTGGGCTCCACATACTTTTGTGGAAGTCATGCCAATTTGTCAGTCCTGTAAGAATTTGTATTACCAccgtatttgtgtattttaaacagtgtaaataaatgaattacttGTA

Function

symbol description
csnk1db Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in several processes, including organelle assembly; positive regulation of canonical Wnt signaling pathway; and positive regulation of proteasomal ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within Wnt signaling pathway and protein phosphorylation. Predicted to be active in cytoplasm; nucleus; and spindle microtubule. Is expressed in several structures, including axis; brain; notochord; presumptive neural retina; and yolk syncytial layer. Human ortholog(s) of this gene implicated in advanced sleep phase syndrome 2. Orthologous to human CSNK1D (casein kinase 1 delta).

NR:

description
PREDICTED: casein kinase I

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08959 CSNK1D; casein kinase 1, delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253470.1 True 3136 mRNA 0.46 10 14673204 14684302

Neighbor

gene id symbol gene type direction distance location
rbfox3a LOC107566522,LOC107755508,LOC107684054,LOC107581581,LOC108435270,LOC107702478,LOC108273414 coding upstream 29826 14279716 ~ 14643378 (+)
nog3 nog,nog3,LOC107702438,LOC107566874,LOC107722200,LOC107684148,LOC107581671 coding upstream 449095 14222944 ~ 14224109 (+)
ankfn1 ankfn1,LOC107702427,LOC107684130,LOC107722232 coding upstream 457553 14183582 ~ 14215651 (+)
hlfb hlf,LOC107566512,LOC107702475,LOC107581580,LOC107684053,LOC107722239 coding upstream 531132 14136665 ~ 14142072 (+)
lrrc59 lrrc59,LOC107755517,LOC107684048,LOC107722190,LOC107581574 coding upstream 672877 13997306 ~ 14000327 (+)
ccdc57 ccdc57,LOC107702483,LOC107566601,LOC107565792 coding downstream 7943 14692245 ~ 14704810 (+)
fasn fasn coding downstream 22089 14706391 ~ 14728083 (+)
narf narf,LOC107702486,LOC107565794,LOC107755497,LOC107722235,LOC107684062 coding downstream 47107 14731409 ~ 14739878 (+)
slc9a3r1a LOC107702487,LOC107565796,LOC107755498,LOC107722225,LOC107684064,LOC107581587 coding downstream 56037 14740339 ~ 14762948 (+)
mrpl43 mrpl43,LOC107722220,LOC107565786,LOC107581592 coding downstream 181122 14865424 ~ 14866748 (+)
LOC122355796 NA non-coding upstream 406175 14245352 ~ 14267029 (+)
G88270 enpp7.1,LOC107755405,LOC107684149,LOC107722193,LOC107581672,LOC107755509 non-coding upstream 429894 14233512 ~ 14243310 (+)
G88269 enpp7.1,LOC107684149,LOC107722193,LOC107755405,LOC107581672,LOC107702441 non-coding upstream 434901 14237413 ~ 14238303 (+)
G88238 NA non-coding upstream 454228 14142713 ~ 14218976 (+)
G88207 LOC107702472,LOC107581578,LOC107566485,LOC107722231,LOC108443562,LOC103039554,LOC107684050 non-coding upstream 582336 14028426 ~ 14090868 (+)
G88296 NA non-coding downstream 96613 14780915 ~ 14783938 (+)
LOC122355815 NA non-coding downstream 233460 14917762 ~ 14919039 (+)
G88455 NA non-coding downstream 236867 14921169 ~ 14927413 (+)
G88509 NA non-coding downstream 555667 15239969 ~ 15240364 (+)
G88543 NA non-coding downstream 830969 15515271 ~ 15778531 (+)
stxbp4 stxbp4,LOC107702473,LOC107581670 other upstream 541419 14105956 ~ 14131785 (+)
rnf157 rnf157,si:dkey-49c17.3,LOC107702467,LOC107755520,LOC107684047,LOC107722211 other upstream 680160 13978171 ~ 13993044 (+)
LOC122355339 LOC107702424 other upstream 768577 13894361 ~ 13904627 (+)
gucy2g gucy2g,LOC107702423,LOC107755438,LOC107722192,LOC107581632,LOC107684125,LOC107571103,LOC108273537 other upstream 808461 13855695 ~ 13864743 (+)
G88082 NA other upstream 1076856 13595794 ~ 13596348 (+)
sfxn2 sfxn2,timp2a,LOC107755483,LOC107722238,LOC107581595,LOC107690949,LOC107565802,LOC107755484,LOC107684079,LOC103024286 other downstream 245777 14930079 ~ 14940191 (+)
si:dkey-21c1.4 LOC107755475,LOC107576597,LOC107690918 other downstream 623124 15307426 ~ 15312004 (+)
qki2 qki2,LOC108426533,LOC107755469,LOC107690925,LOC107601430,LOC103029551 other downstream 662243 15346545 ~ 15378101 (+)
LOC122355837 ndst2b,LOC107601424,LOC107755463,LOC107690932,LOC107749844,LOC107684097,LOC107561853,LOC108410510 other downstream 767192 15451494 ~ 15774014 (+)
baiap2b baiap2b,LOC107684102,LOC107749842,LOC107690938,LOC107755398,LOC108273716 other downstream 1148982 15833284 ~ 15928026 (+)

Expression


Co-expression Network