c1qtnf1 (LOC107702481,LOC107755506,LOC107566571,LOC107722189,LOC107581674,LOC107684055)


Basic Information

Item Value
gene id c1qtnf1
gene name LOC107702481,LOC107755506,LOC107566571,LOC107722189,LOC107581674,LOC107684055
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 14662207 ~ 14670662 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253471.1
TCCTGCATTTTTTTCCGGCTCCTCATGGCATGCTGAGTTTGGGAGATCAGTAGGGAGATGCCACAAAAACGCTGACAGGCTATAACACTCTCAGAGACACACAGCAGTGCGTCCCAGTCAACGCAAGCATCCTCAGTGCAGCCCAGCAGAGCTCTCAAGTTTGGACCCGCCAAGATTAAGATGCTGGTATCAAGCCTGGTACTGCTGATGGTGGTGTTTGCCAGAAGGGTTGAGCCGTATATTGCACAATATCGGGATGTGGGCCAAGACACTTATGAGCCCAGAGAAAACCAGAGATCCCCAGAAAACTACAGAGATGGCAGTGGAACAGAGTGCAGGCGGTGTTGTGACCCTGCAGAGGAGGCCCCACAGTACGCCAGTCAATACCCACAGTACAACATTGTGCCACAGATAAACATCACCATCCTAAAAGGGGAGAAGGGAGACAGTGGCGAGCGAGGACCTTATGGAAAAACTGGCAAGTCTGGGCAAAGTGGCCCCCGAGGCCCTCATGGTGTGAAGGGACACAAGGGCAGCATCGGTTCTCCCGGAGAACCCTGTAAGTCCTACTACGCTGCCTTCTCTGTGGGCCGCAAGAAGGCTCTGCACAGTAACGATTACTACCAAACCATGATCTTCGACACAGAGTTTGTCAACTTGTACGGCCACTTCAACATGTTTACGGGCAAGTTCTTTTGCTACGTCCCCGGCATCTATTTCTTCAGCATCAACGCGCACACTTGGAACCAAAAGGAGACATACCTGCATCTAATGAAGAACGAGCAGGAGATGGCCATCTTGTACGCTCAGCCCAGCGATCGCTCCATCATGCAGAGCCAGAGCCTCATGCTGGAGCTGGAGAGGGACGACCAGGTGTGGATTCGGCTCTATAAGGGCGAGAGAGAGAACGCGGTGTTCAGTGATGACTTTGACACCTACATCACATTTAGTGGCTACCTTATTAAAGCAAAGTCAGAGGGTTAAACAGAGACAATCTATGGACAGCGGGGATTTATGTAACACTGTTTATTACATGAGATGTAATTTCTTGTTATTcctttttgtaatatatttttaacatggtACTTCAGGAGGAACCTTGGCTCATTTTTATGACCCTGTACTGTGTGTCTGACCATCTTTAACTTTGTTACAGAGGCTGGTGCTAACATGACAAACGTGGTAAAGGTTATTTGTgctagaaatattaaaatcaatacaaatcTATATCtacaatcataaaaaaaagacagtatcATATAAAGACAACAGTATCATATTTTTAAGAGATTTTGCACTACATGCTGTTTTCATGTATAGAAATATGAGTAATCATTTAACAGATTACTtgaaattattgcattatatctGTTATATATCCGGCTGCAAATCAGTATTAAATTGATTGTAGAGAACAGAATGGTGCtacaattataatttcaatttcagttcaACGTTCATATCATTAAATCAACAGTTTAAACAACTACAAGTATATACAATTAATAACGATCACTCAATGTACTGTATTATAAATTGGTAAGATTTCATGGTCATATCagtatatatgttataaatttGATAAGTTAATCAAATGTATACTTTAAAACAACGGAAATAGTAAGACTACAAAAATCTGTCCCTGTTTTGCACAAAATCtctataaaatcaaaaataatacgAACTGGACAATTAGCACTTAACCTAAGCTCATTATTTAGAACATTTCTGAAAGAACCGGGTTACTGTGGTCAACAGCAAGCTTCTATAAAAAGACTAACAGGCTTCAGCAGGAAGCACACTTATTACTAttgttcatttgtaaatgtgttCATTGTCTATTTTGTCAGACAATCAAATTGGTGACCTAGAGGTCACTgttcattaaatgttaaaacgcTGCAATAAATGAGTGGTGCTGTAAAacaagttcatttatttcaataaacagTCCTTTTAGACTACA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG:

id description
K19470 C1QTNF1_6_8; complement C1q tumor necrosis factor-related protein 1/6/8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253471.1 True 1966 mRNA 0.41 4 14662207 14670662

Neighbor

gene id symbol gene type direction distance location
LOC122355870 enpp7.2,LOC107755509,LOC107702441,LOC107581672,LOC107755405,LOC107566788,LOC107722193 coding downstream 418760 14240399 ~ 14243447 (-)
LOC122355813 LOC107755405,LOC107581672,LOC107684149,LOC107722193,LOC107755509,LOC107702441 coding downstream 422561 14235240 ~ 14239646 (-)
si:ch73-256g18.2 NA coding downstream 515480 14143603 ~ 14146727 (-)
LOC122355098 cox11,LOC107702474,LOC107566498,LOC107755514,LOC108443564,LOC102229253 coding downstream 556285 14102932 ~ 14105922 (-)
rab40b rab40b,LOC107702472,LOC107722231,LOC107581578,LOC107566485,LOC107755515,LOC107684050,LOC108443562 coding downstream 560104 14089844 ~ 14102103 (-)
slc16a3b slc16a3,LOC107755502,LOC107581584,LOC107566576,LOC107702479,LOC107722214 coding upstream 14435 14685097 ~ 14691316 (-)
LOC122355547 zgc:91940,LOC107755433,LOC107684063,LOC107565788,LOC107722202,LOC107702442,LOC103021303,LOC106578881 coding upstream 57731 14728393 ~ 14730942 (-)
mbtd1 LOC107684067,LOC107565795,LOC107702488,LOC108430745,LOC107755495,LOC103045049,LOC107722179 coding upstream 89336 14759998 ~ 14770723 (-)
tdrkh tdrkh,LOC107755494,LOC107702489,LOC107722206 coding upstream 101218 14771880 ~ 14780197 (-)
tmem94 LOC107755493,LOC107565798,LOC107722205,LOC107581589 coding upstream 112471 14783133 ~ 14802730 (-)
G88355 NA non-coding downstream 263279 14398360 ~ 14398928 (-)
G88233 NA non-coding downstream 529069 14131919 ~ 14133138 (-)
G88206 NA non-coding downstream 666255 13994372 ~ 13995952 (-)
G88205 NA non-coding downstream 668021 13993660 ~ 13994186 (-)
G88146 NA non-coding downstream 767849 13824600 ~ 13894358 (-)
G88384 NA non-coding upstream 10255 14680917 ~ 14684300 (-)
G88381 NA non-coding upstream 35658 14706320 ~ 14709357 (-)
G88403 fasn,LOC107702482,LOC107579490 non-coding upstream 49853 14720515 ~ 14721234 (-)
G88603 NA non-coding upstream 337836 15008498 ~ 15009558 (-)
G88605 cyth2,cyth1,LOC103381773,LOC107717468,LOC100709795 non-coding upstream 340261 15010923 ~ 15013151 (-)
G88365 NA other downstream 18427 14541566 ~ 14643780 (-)
G88250 LOC107702476 other downstream 512202 14148047 ~ 14150005 (-)
srsf2a srsf2,LOC107702465,LOC107566380,LOC107684046 other downstream 685696 13972882 ~ 13976511 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107702422,LOC107750316,LOC107566231,LOC106949585,LOC106589326 other downstream 970867 13609420 ~ 13691340 (-)
entpd1 LOC107707825,LOC107755533,LOC107581561,LOC107702455,LOC107684037,LOC107566185 other downstream 1121906 13523668 ~ 13540301 (-)
LOC122355209 NA other upstream 31906 14702568 ~ 14706251 (-)
ndufaf8 NA other upstream 623171 15293833 ~ 15295240 (-)
si:dkey-21c1.1 tepsin,si:dkey-21c1.1,LOC107601406,LOC107755426,LOC107684135,LOC107749856,LOC107601412,LOC107581605,LOC107749858 other upstream 629635 15300297 ~ 15306509 (-)
bicral gltscr1l,LOC107690921,LOC107601433,LOC107749855,LOC107684087,LOC107581606 other upstream 639907 15310569 ~ 15319858 (-)
pmp22b pmp22,LOC107561836,LOC107684480,LOC107597829,LOC107692454,LOC107753252 other upstream 1929233 16599895 ~ 16609807 (-)

Expression


Co-expression Network