acsl5 (acsl5,LOC107702457,LOC107566323,LOC107722228,LOC107755526,LOC107581566,LOC107684041)


Basic Information

Item Value
gene id acsl5
gene name acsl5,LOC107702457,LOC107566323,LOC107722228,LOC107755526,LOC107581566,LOC107684041
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 13846173 ~ 13854773 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253472.1
GCTGTATGGCATGATTCTGTTTATGTTCAGTCATTTGTATTATCAGGGAACAGATAGCAGCAATTGGTTCAAAGGTCACTCTTGTGCTTGTTTTATTGGACCTGAGACCATGCCTTCCTTTTCAGTCTTGTGGCTTTAGCAAACCTGTGCAAGGGACAGTCTCACTGGACTTTTTCTTCCAGTTTCATCACCTGGCGGACACACTGGACTCCTGAAGGTTATCCAGcagcttcAGCAGTTCCTGTGCATTATGGAATTCTTGTTTGAGTTCCTGTTTACCCCGCTGTCCACTTCAGGACTGGTGTTTCTGTTCAGCCTCGCAGCTGTAGCTCTGGTTCATCTCAACACCAGGCCGAAACCGCTGCAGCCCCCCACAGACCTCAACCAACAGACCGTGGGAGTAGCGGGTGGTGCTAGAAAAACAGCACTTTTGAAAGATGAAAACCTAATCTCGTGCTTATATGAGGATGCCAAAACACTATATGAGGTTTTTCAAAGAGGACTACGTGTCTCAGGAAATGGACCGTGCTTGGGGCACAGAAAAAAGGGGCAACCTTATCAATGGCTTAAATACAAACAGGTTTCCGACAGAGCTGAATTCTTGGGGTCTGGACTTATCCACCGTGGCCAGAAGCCATCGCAAGAATCGTTTATCGGCATTTTCGCTCAGAACCGGCCAGAGTGGATTATCGGAGAACTGGCCTGCTATACCTATTCCATGGTGGCAGTGCCTCTTTACGACACCTTGGGACCTGAGGCTCTTGTGTTCATCATTAATAGAGCAAAAATATCCACAGTGATATGTGATAAGCAGGATAAGGCAGAAACGCTGCTGGATAACTGTGAGAAAAAACTCACACCTGTTTTGAAAACCATCATTCTGATGGACCCCTATGATTCTGCGTTGATTGACAGAGGCTCTAAGTGTGGTGTGGACGTCCTGTCACTGAAAGATGTAGAGGCCTTGGGAAAAAACAACCATCACAGGCCTGTTCCACCAAAACCAGAAGACCTAAGTATTATTTGCTTTACCAGCGGAACCACAGGGGATCCAAAGGGAGCTATGCTGACCCATGAAAATGTAGTTGCAGATGCAGCCGGCGTGGTAAAGACTTTTGAGAGCGTCTTTGTGCCCGTTCCATCTGATGTGTCCATCTCGTTTCTGCCGCTGGCGCACATGTTTGAAAGAGTTGTACAGACAGTGCTGTACAGTGTAGGGGGAAGAGTCGGGTTCTTCCAAGGTGATGTCAGGTTTCTACCAGATGACATGAAAACCCTGCAGCCTACTGTATTTCCAGTGGTTCCACGTCTTCTGAATCGCGTTTACGACAAGGTCCAGAGTGGGGCCCAGACTCCGTTTAAGAAATGGCTCCTGAACTTTGCCATTGAGAAGAAATGTGCAGAGGTCAAGCAGGGCATTATCAGGAATGACAGCATATGGGACAAACTAATCTTTCACAAAGTGCAGGAGTCCCTGGGGGGCCGCGTGAGGGTGATGGTGACCGGGGCCGCTCCCATTTCTCCAACGGTGCTCACTTTTCTCCGGGCAAGCCTCGGCTGCCAGATATTCGAGGCATACGGCCAGACAGAGTGCACTGCGGCCTGCTCTTTCACCATACCAGGAGACTGGCATACAGGACATGTTGGAGTTCCTATTCCATGCAATATTGTCAAACTTGTTGATGTGGAGGAAATGAATTACTTTGCATCCAACGGCGAAGGAGAGGTTTGTGTCAAAGGGAAGAATGTGTTTCGTGGATATCTCAATGACCCAGAAAAGACAGCAGAGGCTTTAGACAAAGACGGATGGCTGCACACTGGAGATATCGGCAAATGGCTGCCTAGCGGAGTGTTGAAGATTATCGAcaggaagaaaaacattttcaaactgGCTCAGGGCGAATACATCGCACCAGAAAAGATCGAAAACGTTTACATTCGGAGCGCTCCAGTCGCTCAAGTGTTTGTGCATGGTGACAGTTTACAgTCATCTTTGGTGGCCATTGTGGTGCCAGATCCTGAAGTATTGCCAGGATTTGCTGAAAAACTGGGAGTAAAAGGTTCATTAGAGGAGGTTTGTAAAAATCAGgaaataaagaaagcaaTCATCTCTGACCTCAACAAACTGGGACGTGAAGCTGGCCTGAAGTCTTTTGAACAAGTAAAAGACCTGTACCTGCATCCTGACATGTTCACTATAGAAAACGGTCTCCTCACTCCAACACTGAAAGCCAAAAGGGCAGATCTCACCAAATTCTTTAAGGTTCAGATTGAGTCTCTATATGCCAACATGTAGTGCATTAATAAAAGCTGAGGATATCCTGCTGTGCGATGTATTTATGAGTGCTGTttgtgttgtgatgtttttctatATTTGCTCAAAGATTTTATAAGCTCTGTATCAAATTAACTGCATGTATTAATCTGTGCCCAGAGACTCGAGACAACGTATATGATTTGTCTGGATATGCTGACATAAAACGAATGTACGAACATCCTTAAAAATGTAACGAATACCAAAAgaatgctaatttatttttttcccaggaaaaaaaaccaaaaaagcatTAAGACGTCAATGTCAATACgtcaattaaataaacaactatATTTACA
>XM_043253473.1
AGCTGTATGGCATGATTCTGTTTATGTTCAGTCATTTGTATTATCAGGGAACAGATAGCAGCAATTGGTTCAAAGGTCACTCTTGTGCTTGTTTTATTGGACCTGAGACCATGCCTTCCTTTTCAGTCTTGTGGCTTTAGCAAACCTGTGCAAGGGACAGTCTCACTGGACTTTTTCTTCCAGTTTCATCACCTGGCGGACACACTGGACTCCTGAAGGTTATCCAGcttcAGCAGTTCCTGTGCATTATGGAATTCTTGTTTGAGTTCCTGTTTACCCCGCTGTCCACTTCAGGACTGGTGTTTCTGTTCAGCCTCGCAGCTGTAGCTCTGGTTCATCTCAACACCAGGCCGAAACCGCTGCAGCCCCCCACAGACCTCAACCAACAGACCGTGGGAGTAGCGGGTGGTGCTAGAAAAACAGCACTTTTGAAAGATGAAAACCTAATCTCGTGCTTATATGAGGATGCCAAAACACTATATGAGGTTTTTCAAAGAGGACTACGTGTCTCAGGAAATGGACCGTGCTTGGGGCACAGAAAAAAGGGGCAACCTTATCAATGGCTTAAATACAAACAGGTTTCCGACAGAGCTGAATTCTTGGGGTCTGGACTTATCCACCGTGGCCAGAAGCCATCGCAAGAATCGTTTATCGGCATTTTCGCTCAGAACCGGCCAGAGTGGATTATCGGAGAACTGGCCTGCTATACCTATTCCATGGTGGCAGTGCCTCTTTACGACACCTTGGGACCTGAGGCTCTTGTGTTCATCATTAATAGAGCAAAAATATCCACAGTGATATGTGATAAGCAGGATAAGGCAGAAACGCTGCTGGATAACTGTGAGAAAAAACTCACACCTGTTTTGAAAACCATCATTCTGATGGACCCCTATGATTCTGCGTTGATTGACAGAGGCTCTAAGTGTGGTGTGGACGTCCTGTCACTGAAAGATGTAGAGGCCTTGGGAAAAAACAACCATCACAGGCCTGTTCCACCAAAACCAGAAGACCTAAGTATTATTTGCTTTACCAGCGGAACCACAGGGGATCCAAAGGGAGCTATGCTGACCCATGAAAATGTAGTTGCAGATGCAGCCGGCGTGGTAAAGACTTTTGAGAGCGTCTTTGTGCCCGTTCCATCTGATGTGTCCATCTCGTTTCTGCCGCTGGCGCACATGTTTGAAAGAGTTGTACAGACAGTGCTGTACAGTGTAGGGGGAAGAGTCGGGTTCTTCCAAGGTGATGTCAGGTTTCTACCAGATGACATGAAAACCCTGCAGCCTACTGTATTTCCAGTGGTTCCACGTCTTCTGAATCGCGTTTACGACAAGGTCCAGAGTGGGGCCCAGACTCCGTTTAAGAAATGGCTCCTGAACTTTGCCATTGAGAAGAAATGTGCAGAGGTCAAGCAGGGCATTATCAGGAATGACAGCATATGGGACAAACTAATCTTTCACAAAGTGCAGGAGTCCCTGGGGGGCCGCGTGAGGGTGATGGTGACCGGGGCCGCTCCCATTTCTCCAACGGTGCTCACTTTTCTCCGGGCAAGCCTCGGCTGCCAGATATTCGAGGCATACGGCCAGACAGAGTGCACTGCGGCCTGCTCTTTCACCATACCAGGAGACTGGCATACAGGACATGTTGGAGTTCCTATTCCATGCAATATTGTCAAACTTGTTGATGTGGAGGAAATGAATTACTTTGCATCCAACGGCGAAGGAGAGGTTTGTGTCAAAGGGAAGAATGTGTTTCGTGGATATCTCAATGACCCAGAAAAGACAGCAGAGGCTTTAGACAAAGACGGATGGCTGCACACTGGAGATATCGGCAAATGGCTGCCTAGCGGAGTGTTGAAGATTATCGAcaggaagaaaaacattttcaaactgGCTCAGGGCGAATACATCGCACCAGAAAAGATCGAAAACGTTTACATTCGGAGCGCTCCAGTCGCTCAAGTGTTTGTGCATGGTGACAGTTTACAgTCATCTTTGGTGGCCATTGTGGTGCCAGATCCTGAAGTATTGCCAGGATTTGCTGAAAAACTGGGAGTAAAAGGTTCATTAGAGGAGGTTTGTAAAAATCAGgaaataaagaaagcaaTCATCTCTGACCTCAACAAACTGGGACGTGAAGCTGGCCTGAAGTCTTTTGAACAAGTAAAAGACCTGTACCTGCATCCTGACATGTTCACTATAGAAAACGGTCTCCTCACTCCAACACTGAAAGCCAAAAGGGCAGATCTCACCAAATTCTTTAAGGTTCAGATTGAGTCTCTATATGCCAACATGTAGTGCATTAATAAAAGCTGAGGATATCCTGCTGTGCGATGTATTTATGAGTGCTGTttgtgttgtgatgtttttctatATTTGCTCAAAGATTTTATAAGCTCTGTATCAAATTAACTGCATGTATTAATCTGTGCCCAGAGACTCGAGACAACGTATATGATTTGTCTGGATATGCTGACATAAAACGAATGTACGAACATCCTTAAAAATGTAACGAATACCAAAAgaatgctaatttatttttttcccaggaaaaaaaaccaaaaaagcatTAAGACGTCAATGTCAATACgtcaattaaataaacaactatATTTACA

Function

symbol description
acsl5 Predicted to enable arachidonate-CoA ligase activity. Predicted to be involved in several processes, including long-chain fatty acid metabolic process; long-chain fatty-acyl-CoA biosynthetic process; and positive regulation of long-chain fatty acid import across plasma membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum; membrane; and mitochondrion. Is expressed in brain; gill; liver; pleuroperitoneal region; and yolk syncytial layer. Orthologous to human ACSL5 (acyl-CoA synthetase long chain family member 5).

NR:

description
long-chain-fatty-acid--CoA ligase 5

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01897 ACSL, fadD; long-chain acyl-CoA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253472.1 True 2616 mRNA 0.45 21 13846173 13854772
XM_043253473.1 False 2614 mRNA 0.45 21 13846173 13854773

Neighbor

gene id symbol gene type direction distance location
vti1a vti1a,LOC107702459,LOC106589328,LOC107566351 coding downstream 6717 13719671 ~ 13839456 (-)
crygmxl2 crygmxl2,LOC107566855,LOC107708427,LOC107702435,LOC107581669,LOC107684145 coding downstream 289083 13555693 ~ 13557090 (-)
crygmx crygmx,LOC107755411,LOC107566847,LOC107684144,LOC107581668 coding downstream 291148 13553556 ~ 13555025 (-)
casp7 casp7,LOC107707870,LOC107684033,LOC107581558,LOC107566160 coding downstream 401441 13436907 ~ 13444732 (-)
LOC122355076 LOC107566710,LOC107684141,LOC107581554 coding downstream 423215 13418717 ~ 13422958 (-)
tectb tectb,LOC107755437,LOC107702437,LOC107566341,LOC107581573,LOC107684045,LOC107722201 coding upstream 10053 13864826 ~ 13872555 (-)
nat9 LOC107702469,LOC107566461,LOC107581577,LOC107722187 coding upstream 145905 14000678 ~ 14003093 (-)
grin2cb grin2c,LOC107755516,LOC107702470,LOC107722186,LOC107684146,LOC107581635 coding upstream 188798 14043571 ~ 14081743 (-)
rab40b rab40b,LOC107702472,LOC107722231,LOC107581578,LOC107566485,LOC107755515,LOC107684050,LOC108443562 coding upstream 235071 14089844 ~ 14102103 (-)
LOC122355098 cox11,LOC107702474,LOC107566498,LOC107755514,LOC108443564,LOC102229253 coding upstream 248159 14102932 ~ 14105922 (-)
LOC122355666 NA non-coding downstream 133632 13709055 ~ 13712541 (-)
G88035 nrap,LOC107702452,LOC107755535 non-coding downstream 384928 13460145 ~ 13461245 (-)
G88034 nrap,LOC107755535,LOC107702452 non-coding downstream 386308 13458456 ~ 13459865 (-)
G88019 NA non-coding downstream 412048 13433894 ~ 13434125 (-)
G88003 NA non-coding downstream 477853 13365953 ~ 13368320 (-)
G88205 NA non-coding upstream 138887 13993660 ~ 13994186 (-)
G88206 NA non-coding upstream 139599 13994372 ~ 13995952 (-)
G88233 NA non-coding upstream 277146 14131919 ~ 14133138 (-)
G88355 NA non-coding upstream 543587 14398360 ~ 14398928 (-)
G88384 NA non-coding upstream 826144 14680917 ~ 14684300 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107702422,LOC107750316,LOC107566231,LOC106949585,LOC106589326 other downstream 154833 13609420 ~ 13691340 (-)
entpd1 LOC107707825,LOC107755533,LOC107581561,LOC107702455,LOC107684037,LOC107566185 other downstream 305872 13523668 ~ 13540301 (-)
LOC122355808 LOC107684141,LOC107702421,LOC107581556,LOC107684142,LOC107708119,LOC107708127 other downstream 413978 13424308 ~ 13432195 (-)
G87845 LOC107675011 other downstream 1093495 12751904 ~ 12752678 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other downstream 1170701 12649383 ~ 12675472 (-)
srsf2a srsf2,LOC107702465,LOC107566380,LOC107684046 other upstream 118109 13972882 ~ 13976511 (-)
G88250 LOC107702476 other upstream 293274 14148047 ~ 14150005 (-)
G88365 NA other upstream 686793 14541566 ~ 14643780 (-)
LOC122355209 NA other upstream 847795 14702568 ~ 14706251 (-)
ndufaf8 NA other upstream 1439060 15293833 ~ 15295240 (-)

Expression


Co-expression Network