zdhhc6 (zdhhc6,LOC107755527,LOC107684040,LOC107722226,LOC107702458)


Basic Information

Item Value
gene id zdhhc6
gene name zdhhc6,LOC107755527,LOC107684040,LOC107722226,LOC107702458
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 13839483 ~ 13846089 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253474.1
GGTTCCGCCGTGGTGTGACTCGCGCGTGGTTTGTCTTTCTCGTTGAATTATGGTTTAGTTCAACGAAAAACAGAATTCGCCTCTGACAGTATTACGGGCGTTAAATAGCAAGGTCGCTGATTCATCTTAAGCGTGACTTTCGGTTTTTCTTTGACTGTGATCGCGCGAGGAAATGTCGAGATGGATGGCATGGCTTTAGCTCGAGGATAGGGTGATCAGAGGATTAGTACGGAAGGATGCCACACGCTGACAAAGTCTGGAACTCTAGGAACCGGCGGGCCCCTGTGACTGGTGACGTAGCCGATCGCTGGTTGTTTCGTAGAAGACAGAAAAGATGCCCTTTGACCTCTTTAAGTCActgcagtaaacacaaacaacacgCCTGACTATTTCACCTGTTACACTGAGGACCTTAAAGACGCTGAAATCCACCGAAACAATGAATATTCTGTCCGCTATAATCGTGTTCGAGAACCTCCATGAGGTCAAGAGGCTGTTCCACTGGGGTCCGATCATCGCTCTGACGGTCATCGGCGTGTGCTCCTCCATGGCCATACTGGACTCCATCATCTGGTACTGGCCACTGGACACCACAGGAGGCAGCATCAACTTCATCATGCTCATTAACTGGACCGTCCTCATTCTTTACAACTACTTTAATGCCATGTTTGTAGGCCCTGGTTACATTCCTCTGGAGTGGAAACCGGAGAATCAGCAAGATATAATGTACTTACAGTTCTGTAGATTGTGCCAAGGCTATAAAGCCCCAAGGTCACATCACTGTCGCAAATGTAACAGGTGTGTGATGAAGATGGATCATCACTGTCCCTGGATCAACAACTGCTGCGGTCACCTGAATCATGCGTACTTCACCAGCTTCCTCCTGCTTGCTCCAATGGGCTGCATACATGCCGCGCTAATATTTATCATGACCATGTACACTCAACTTTATGACCGGATCTCATTTGGTTGGAGCTCTGTGAAGATTGACATGAGCGCTGCTCGGCACGTCCACCATCCCATCATGCCTTTCAGCATCGCAGCATTTGCAGCCACTCTCTTTGCTCTGGGTCTGGCGCTGGGTACCACTATTGCTGTTGGgatgttgtttttcattcagATGAAGGTGATTCTTCGAAACAAAACTTCGATAGAAGCGTGGATTGAGGAGAAAGCCAAAGACAGAATCCAGTACTACCAAACAGGTGAAGACTTCATCTTCCCCTATGATCTGGGCAGCAGGTGGGAGAACTTCAAGCAGGTGTTCACCTGGTCCAGCACCCCCTTAGGAGATGGAATCGAATGGCCAGTGCATGAGAAGTGTAACCAGTACACTCTGACCATTGAGCAGCTGAAGCAAAAGCATGATAAACGCCAGAGGAGTGTGGAGTACAGAGTGGTGGAGGACTACAATGGTGCGTGTTGCCCGTTGGGAAAGGGACTGAATACTTTCTTTAGGACACCTTGTACAGAGGAACCCAGAATTAAACTCACAAAGGGAGAGACCATCTTTGCTACAAGAGGAACAAAATGGTGGATGTATGGAGACAAAGTTTTGAACGAGGAACAGGCAAAAGCTGGAGCTCGAATTAGAGGATGGTTTCCACGCAGATGTGTTGAGAAGTGTCACTATGACTCGGCAAATAATTCGACaagtgaagaaaagaaagaacaatGATACAGAATTATATATTTCACAGATGGCTTTGAACAGAGGACCTAATATTAGGGCCTGAACCCTGCTGAGATGCAAATTTCTTTCTGATTCTTTTGTAAAGCTGTTCAATGGCACCAGCGCTAAGTGTTGAGGAAAATTGATACTGACAGACACCCCAAAGTTATTCACTTGCGTAActtaataacatttcatttccaAAGAACAGCTGCCAGAGAAACTGGCAAACGAGGAATAAATAgaggttttattaaaacaggATCGGGGCATATGGCAGTATATTCTTTAAAGGGGGTTATTAAGATGTTTACTTGAAActtatttcttcttcttgcctttctctttctcgCTTGCTCTCTCGTTCGTTGATGCTCACACTGATTATGCAAAGCCTTTTTTTTCCAATTGTAACAAGGTCTTTGTCATGCAAATTGTCTGAATCGTTTATATAATggaaattactattttattttatttttgatggcttacttttttgtaaaactgATGTCAACCTCGCCGTTTTCAGAGACAAATAAACAACCGTGATCTGTA

Function

symbol description
zdhhc6 Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in peptidyl-L-cysteine S-palmitoylation and protein targeting to membrane. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human ZDHHC6 (zinc finger DHHC-type palmitoyltransferase 6).

NR:

description
palmitoyltransferase ZDHHC6 isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K20031 ZDHHC6; palmitoyltransferase ZDHHC6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253474.1 True 2227 mRNA 0.45 11 13839483 13846089

Neighbor

gene id symbol gene type direction distance location
aldh18a1 aldh18a1,LOC107755531,LOC107707764,LOC107684039,LOC107702454 coding upstream 288254 13541318 ~ 13551229 (+)
slc35f3a slc35f3a,LOC107702433,LOC107581666,LOC107566839 coding upstream 316158 13513594 ~ 13523325 (+)
kcnk1a kcnk1a,LOC107755439,LOC107566833,LOC107708431,LOC107684143,LOC107702432 coding upstream 327646 13507585 ~ 13511837 (+)
thbs2b thbs2b,LOC107755534,LOC107702453,LOC107566173,LOC107581559,LOC107707836,LOC107684035 coding upstream 341646 13482058 ~ 13497837 (+)
LOC122355710 LOC107755535,LOC107702452,LOC107684034,LOC107707842 coding upstream 376814 13446433 ~ 13462669 (+)
gpam gpam,LOC107702461,LOC107566297,LOC107755524,LOC107581571,LOC107722223 coding downstream 26929 13873018 ~ 13894073 (+)
cpn1 cpn1,LOC107722209,LOC107684044,LOC107702463,LOC107755523 coding downstream 68087 13914176 ~ 13922686 (+)
LOC122355687 dnmbp,LOC107755522,LOC107702462,LOC107722208,LOC107684043,LOC107566369 coding downstream 79671 13925760 ~ 13967657 (+)
habp2 LOC107684127,LOC107722212,LOC107581633 coding downstream 122420 13968509 ~ 13972650 (+)
LOC122355878 LOC107755407,LOC107566757,LOC107702425,LOC107722184 coding downstream 147579 13993668 ~ 13997063 (+)
G88111 NA non-coding upstream 122351 13715584 ~ 13717132 (+)
G88106 NA non-coding upstream 129244 13710004 ~ 13710239 (+)
G88079 NA non-coding upstream 259192 13580078 ~ 13580291 (+)
G88063 NA non-coding upstream 299460 13539789 ~ 13540023 (+)
G88062 NA non-coding upstream 301395 13536166 ~ 13538088 (+)
G88207 LOC107702472,LOC107581578,LOC107566485,LOC107722231,LOC108443562,LOC103039554,LOC107684050 non-coding downstream 182337 14028426 ~ 14090868 (+)
G88238 NA non-coding downstream 296624 14142713 ~ 14218976 (+)
G88270 enpp7.1,LOC107755405,LOC107684149,LOC107722193,LOC107581672,LOC107755509 non-coding downstream 387423 14233512 ~ 14243310 (+)
G88269 enpp7.1,LOC107684149,LOC107722193,LOC107755405,LOC107581672,LOC107702441 non-coding downstream 391324 14237413 ~ 14238303 (+)
LOC122355796 NA non-coding downstream 399263 14245352 ~ 14267029 (+)
G88082 NA other upstream 243135 13595794 ~ 13596348 (+)
G88016 NA other upstream 394568 13441943 ~ 13444915 (+)
gall si:rp71-1c10.8,LOC107677873,LOC107743798,LOC107675007,LOC107566084,LOC107754084,LOC107563807 other upstream 1076752 12760374 ~ 12762731 (+)
G87817 NA other upstream 1101834 12732764 ~ 12737649 (+)
nbr1a nbr1,LOC107669491,LOC107706899,LOC107582742,LOC107727312,LOC107666919 other upstream 1893848 11936841 ~ 11945635 (+)
gucy2g gucy2g,LOC107702423,LOC107755438,LOC107722192,LOC107581632,LOC107684125,LOC107571103,LOC108273537 other downstream 9606 13855695 ~ 13864743 (+)
LOC122355339 LOC107702424 other downstream 48272 13894361 ~ 13904627 (+)
rnf157 rnf157,si:dkey-49c17.3,LOC107702467,LOC107755520,LOC107684047,LOC107722211 other downstream 132082 13978171 ~ 13993044 (+)
stxbp4 stxbp4,LOC107702473,LOC107581670 other downstream 259867 14105956 ~ 14131785 (+)
sfxn2 sfxn2,timp2a,LOC107755483,LOC107722238,LOC107581595,LOC107690949,LOC107565802,LOC107755484,LOC107684079,LOC103024286 other downstream 1083990 14930079 ~ 14940191 (+)

Expression


Co-expression Network