vti1a (vti1a,LOC107702459,LOC106589328,LOC107566351)



Basic Information


Item Value
gene id vti1a
gene name vti1a,LOC107702459,LOC106589328,LOC107566351
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 13719671 ~ 13839456 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043253478.1
TTCCCGTGACACCACCCGGAAGTGACGTGGGACATCAATAAAGAGCAGGCAGAAGCAACAGTGTCTAACGCAGCACAGTTCCTCtatcttttaatcttttaaaacaaaaatacaacatgTCTTCTGATTTCGAAGCGTACGAGCAGGACTTTGGCACCCTCACCGCGGAAATAACCAACAAAATCGGAAGAATACCCAAACTAGCCGGTGaggAGAAGACACAGCTGGTTCTAAATGTCGACAAACAGCTTGAAGAAGTCAGAGAGTTGCTCGAGCAGATGGACCTGGAGGTTCGAGAGATTCCTATTCAGAGCCGAGGCATGTACAACAGCCGTCTGAAGAGCTACAAGCAAGAGATGGAGAAACTTGAGAAAGATTTTAAAAGGTCACGTATTGCCTACAGTGATGAGGTGCGGAACGAGCTCCTGGGGGAAGATGGGAGCTCCTCGGAGAGTCAGTTGATAAAGTTACGTGAGGAGAGAGCACATCTGTTGGACAACACAGAGAGGCTGGAAAGGTCATCTCGGAGGCTGGAAGCTGGCTACCAGATAGCGGTGGAAACCGAGCAAGTTGGACAGGAGATCCTCGCCAACCTGCACAGCGACCGCGAGAAGATCCAGAGATCCCGTGATCGGCTGAGAGAGACGGACGCCAACTTGGGCAAGAGCTCTCGGATCCTGACCGGCATGCTGAGAAGGATCATTCAGAATCGTATCCTGGTCTTCATCCTGGGCGCCATCATCCTCCTCACCATCGTCTTGGCCATCTATTTCAATTTGCGAGGGCACTGATCTCCACTGACTGGCCCTAtgcgtgcatgtgtgagtgtgtacgAGCGTGTGTGTAAGATTAATAGTGACAAAAGCGTTGGGCTGGAGTAATTAGGACAAATTGTTCACATGAATCATTCCTGGTGGCCAGTGACAGGGGGCCTCTCCTCGCTGCTCTCGAGCGGAGCGGGACCGTTCTCATCCTCTCTCCCCTTATATTTATGCTGCGTCCATTACTTTTAAAACTTACCGACCCATAGAGAAACCCTGAGGACCGTGATGAGAACGTCAGATGGATGAAGAACATGAAGACGAGCGTCAACGTACGTCATAACCTGCTGTTTAtcgtttagttttctttttctgtaaagCTACTAGTAAAATCCCATCCAtcaggtgtatgtgtgtgtgtgtgtgagagccgTACACAAGGCAAGGCCCCCGGTGCAGTACCATTTAGCACATGGTGCAGaatcacacactacacacagcCCAAAGGTCACGCGCCCGTCTCTCAGTCCCCCTTCATCCAGGATTAGTAGCTTCTCACGCTGTTCCTCTAAGGTCAGCAAAGACCTCGCATGTGTTTAGTTAAACCAGCGGGACTGCTTTGAACAAGAAAACATCCATGTCCACTTTTACCTTTACTAATAAAATCTGACAGCATGATAGTAAATGTAGTCAGTCGtactaataagaaatgtttcttgtatttatttgtcGTTTCAGATGAattgtgatgtatttttttgctgtaactTCTTTTGATTTATCTGGAATTTGTTTTAGCCATTGGTGtttgacattaaaatgataTCATTTGTCTCTACCGTGCAA
>XM_043253479.1
TTCCCGTGACACCACCCGGAAGTGACGTGGGACATCAATAAAGAGCAGGCAGAAGCAACAGTGTCTAACGCAGCACAGTTCCTCtatcttttaatcttttaaaacaaaaatacaacatgTCTTCTGATTTCGAAGCGTACGAGCAGGACTTTGGCACCCTCACCGCGGAAATAACCAACAAAATCGGAAGAATACCCAAACTAGCCGGTGaggAGAAGACACAGCTGGTTCTAAATGTCGACAAACAGCTTGAAGAAGTCAGAGAGTTGCTCGAGCAGATGGACCTGGAGGTTCGAGAGATTCCTATTCAGAGCCGAGGCATGTACAACAGCCGTCTGAAGAGCTACAAGCAAGAGATGGAGAAACTTGAGAAAGATTTTAAAAGGTCACGTATTGCCTACAGTGATGAGGTGCGGAACGAGCTCCTGGGGGAAGATGGGAGCTCCTCGGAGAGTCAGAGAGCACATCTGTTGGACAACACAGAGAGGCTGGAAAGGTCATCTCGGAGGCTGGAAGCTGGCTACCAGATAGCGGTGGAAACCGAGCAAGTTGGACAGGAGATCCTCGCCAACCTGCACAGCGACCGCGAGAAGATCCAGAGATCCCGTGATCGGCTGAGAGAGACGGACGCCAACTTGGGCAAGAGCTCTCGGATCCTGACCGGCATGCTGAGAAGGATCATTCAGAATCGTATCCTGGTCTTCATCCTGGGCGCCATCATCCTCCTCACCATCGTCTTGGCCATCTATTTCAATTTGCGAGGGCACTGATCTCCACTGACTGGCCCTAtgcgtgcatgtgtgagtgtgtacgAGCGTGTGTGTAAGATTAATAGTGACAAAAGCGTTGGGCTGGAGTAATTAGGACAAATTGTTCACATGAATCATTCCTGGTGGCCAGTGACAGGGGGCCTCTCCTCGCTGCTCTCGAGCGGAGCGGGACCGTTCTCATCCTCTCTCCCCTTATATTTATGCTGCGTCCATTACTTTTAAAACTTACCGACCCATAGAGAAACCCTGAGGACCGTGATGAGAACGTCAGATGGATGAAGAACATGAAGACGAGCGTCAACGTACGTCATAACCTGCTGTTTAtcgtttagttttctttttctgtaaagCTACTAGTAAAATCCCATCCAtcaggtgtatgtgtgtgtgtgtgtgagagccgTACACAAGGCAAGGCCCCCGGTGCAGTACCATTTAGCACATGGTGCAGaatcacacactacacacagcCCAAAGGTCACGCGCCCGTCTCTCAGTCCCCCTTCATCCAGGATTAGTAGCTTCTCACGCTGTTCCTCTAAGGTCAGCAAAGACCTCGCATGTGTTTAGTTAAACCAGCGGGACTGCTTTGAACAAGAAAACATCCATGTCCACTTTTACCTTTACTAATAAAATCTGACAGCATGATAGTAAATGTAGTCAGTCGtactaataagaaatgtttcttgtatttatttgtcGTTTCAGATGAattgtgatgtatttttttgctgtaactTCTTTTGATTTATCTGGAATTTGTTTTAGCCATTGGTGtttgacattaaaatgataTCATTTGTCTCTACCGTGCAA
>XM_043253480.1
TTCCCGTGACACCACCCGGAAGTGACGTGGGACATCAATAAAGAGCAGGCAGAAGCAACAGTGTCTAACGCAGCACAGTTCCTCtatcttttaatcttttaaaacaaaaatacaacatgTCTTCTGATTTCGAAGCGTACGAGCAGGACTTTGGCACCCTCACCGCGGAAATAACCAACAAAATCGGAAGAATACCCAAACTAGCCGGTGaggAGAAGACACAGCTGGTTCTAAATGTCGACAAACAGCTTGAAGAAGTCAGAGAGTTGCTCGAGCAGATGGACCTGGAGGTTCGAGAGATTCCTATTCAGAGCCGAGGCATGTACAACAGCCGTCTGAAGAGCTACAAGCAAGAGATGGAGAAACTTGAGAAAGATTTTAAAAGGTCACGTATTGCCTACAGTGATGAGGTGCGGAACGAGCTCCTGGGGGAAGATGGGAGCTCCTCGGAGAGTCAGTTGATAAAGTTACGTGAGGAGAGAGCACATCTGTTGGACAACACAGAGAGGCTGGAAAGGTCATCTCGGAGGCTGGAAGCTGGCTACCAGATAGCGGTGGAAACCGAGCAAGTTGGACAGGAGATCCTCGCCAACCTGCACAGCGACCGCGAGAAGATCCAGAGATCCCGTGATCGGCTGAGAGAGACGGACGCCAACTTGGGCAAGAGCTCTCGGATCCTGACCGGCATGCTGAGAAGGTAAGAGGAAGGATCATTCAGAATCGTATCCTGGTCTTCATCCTGGGCGCCATCATCCTCCTCACCATCGTCTTGGCCATCTATTTCAATTTGCGAGGGCACTGATCTCCACTGACTGGCCCTAtgcgtgcatgtgtgagtgtgtacgAGCGTGTGTGTAAGATTAATAGTGACAAAAGCGTTGGGCTGGAGTAATTAGGACAAATTGTTCACATGAATCATTCCTGGTGGCCAGTGACAGGGGGCCTCTCCTCGCTGCTCTCGAGCGGAGCGGGACCGTTCTCATCCTCTCTCCCCTTATATTTATGCTGCGTCCATTACTTTTAAAACTTACCGACCCATAGAGAAACCCTGAGGACCGTGATGAGAACGTCAGATGGATGAAGAACATGAAGACGAGCGTCAACGTACGTCATAACCTGCTGTTTAtcgtttagttttctttttctgtaaagCTACTAGTAAAATCCCATCCAtcaggtgtatgtgtgtgtgtgtgtgagagccgTACACAAGGCAAGGCCCCCGGTGCAGTACCATTTAGCACATGGTGCAGaatcacacactacacacagcCCAAAGGTCACGCGCCCGTCTCTCAGTCCCCCTTCATCCAGGATTAGTAGCTTCTCACGCTGTTCCTCTAAGGTCAGCAAAGACCTCGCATGTGTTTAGTTAAACCAGCGGGACTGCTTTGAACAAGAAAACATCCATGTCCACTTTTACCTTTACTAATAAAATCTGACAGCATGATAGTAAATGTAGTCAGTCGtactaataagaaatgtttcttgtatttatttgtcGTTTCAGATGAattgtgatgtatttttttgctgtaactTCTTTTGATTTATCTGGAATTTGTTTTAGCCATTGGTGtttgacattaaaatgataTCATTTGTCTCTACCGTGCAA
>XM_043253481.1
TTCCCGTGACACCACCCGGAAGTGACGTGGGACATCAATAAAGAGCAGGCAGAAGCAACAGTGTCTAACGCAGCACAGTTCCTCtatcttttaatcttttaaaacaaaaatacaacatgTCTTCTGATTTCGAAGCGTACGAGCAGGACTTTGGCACCCTCACCGCGGAAATAACCAACAAAATCGGAAGAATACCCAAACTAGCCGGTGaggAGAAGACACAGCTGGTTCTAAATGTCGACAAACAGCTTGAAGAAGTCAGAGAGTTGCTCGAGCAGATGGACCTGGAGGTTCGAGAGATTCCTATTCAGAGCCGAGGCATGTACAACAGCCGTCTGAAGAGCTACAAGCAAGAGATGGAGAAACTTGAGAAAGATTTTAAAAGGTCACGTATTGCCTACAGTGATGAGGTGCGGAACGAGCTCCTGGGGGAAGATGGGAGCTCCTCGGAGAGTCAGAGAGCACATCTGTTGGACAACACAGAGAGGCTGGAAAGGTCATCTCGGAGGCTGGAAGCTGGCTACCAGATAGCGGTGGAAACCGAGCAAGTTGGACAGGAGATCCTCGCCAACCTGCACAGCGACCGCGAGAAGATCCAGAGATCCCGTGATCGGCTGAGAGAGACGGACGCCAACTTGGGCAAGAGCTCTCGGATCCTGACCGGCATGCTGAGAAGGTAAGAGGAAGGATCATTCAGAATCGTATCCTGGTCTTCATCCTGGGCGCCATCATCCTCCTCACCATCGTCTTGGCCATCTATTTCAATTTGCGAGGGCACTGATCTCCACTGACTGGCCCTAtgcgtgcatgtgtgagtgtgtacgAGCGTGTGTGTAAGATTAATAGTGACAAAAGCGTTGGGCTGGAGTAATTAGGACAAATTGTTCACATGAATCATTCCTGGTGGCCAGTGACAGGGGGCCTCTCCTCGCTGCTCTCGAGCGGAGCGGGACCGTTCTCATCCTCTCTCCCCTTATATTTATGCTGCGTCCATTACTTTTAAAACTTACCGACCCATAGAGAAACCCTGAGGACCGTGATGAGAACGTCAGATGGATGAAGAACATGAAGACGAGCGTCAACGTACGTCATAACCTGCTGTTTAtcgtttagttttctttttctgtaaagCTACTAGTAAAATCCCATCCAtcaggtgtatgtgtgtgtgtgtgtgagagccgTACACAAGGCAAGGCCCCCGGTGCAGTACCATTTAGCACATGGTGCAGaatcacacactacacacagcCCAAAGGTCACGCGCCCGTCTCTCAGTCCCCCTTCATCCAGGATTAGTAGCTTCTCACGCTGTTCCTCTAAGGTCAGCAAAGACCTCGCATGTGTTTAGTTAAACCAGCGGGACTGCTTTGAACAAGAAAACATCCATGTCCACTTTTACCTTTACTAATAAAATCTGACAGCATGATAGTAAATGTAGTCAGTCGtactaataagaaatgtttcttgtatttatttgtcGTTTCAGATGAattgtgatgtatttttttgctgtaactTCTTTTGATTTATCTGGAATTTGTTTTAGCCATTGGTGtttgacattaaaatgataTCATTTGTCTCTACCGTGCAA

Function


symbol description
vti1a Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in Golgi vesicle transport; macroautophagy; and retrograde transport, endosome to Golgi. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in Golgi apparatus; cytoplasmic vesicle membrane; and endoplasmic reticulum membrane. Orthologous to human VTI1A (vesicle transport through interaction with t-SNAREs 1A).

NR:

description
PREDICTED: vesicle transport through interaction with t-SNAREs homolog 1A isoform X3

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K08493 VTI1; vesicle transport through interaction with t-SNAREs 1

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043253478.1 False 1607 mRNA 0.47 9 13719671 13839456
XM_043253479.1 False 1586 mRNA 0.47 8 13719671 13839456
XM_043253480.1 True 1618 mRNA 0.47 9 13719671 13839456
XM_043253481.1 False 1597 mRNA 0.47 8 13719671 13839456

Neighbor


gene id symbol gene type direction distance location
crygmxl2 crygmxl2,LOC107566855,LOC107708427,LOC107702435,LOC107581669,LOC107684145 coding downstream 162581 13555693 ~ 13557090 (-)
crygmx crygmx,LOC107755411,LOC107566847,LOC107684144,LOC107581668 coding downstream 164646 13553556 ~ 13555025 (-)
casp7 casp7,LOC107707870,LOC107684033,LOC107581558,LOC107566160 coding downstream 274939 13436907 ~ 13444732 (-)
LOC122355076 LOC107566710,LOC107684141,LOC107581554 coding downstream 296713 13418717 ~ 13422958 (-)
LOC122355682 NA coding downstream 301415 13414181 ~ 13418256 (-)
acsl5 acsl5,LOC107702457,LOC107566323,LOC107722228,LOC107755526,LOC107581566,LOC107684041 coding upstream 6717 13846173 ~ 13854773 (-)
tectb tectb,LOC107755437,LOC107702437,LOC107566341,LOC107581573,LOC107684045,LOC107722201 coding upstream 25370 13864826 ~ 13872555 (-)
nat9 LOC107702469,LOC107566461,LOC107581577,LOC107722187 coding upstream 161222 14000678 ~ 14003093 (-)
grin2cb grin2c,LOC107755516,LOC107702470,LOC107722186,LOC107684146,LOC107581635 coding upstream 204115 14043571 ~ 14081743 (-)
rab40b rab40b,LOC107702472,LOC107722231,LOC107581578,LOC107566485,LOC107755515,LOC107684050,LOC108443562 coding upstream 250388 14089844 ~ 14102103 (-)
LOC122355666 NA non-coding downstream 7130 13709055 ~ 13712541 (-)
G88035 nrap,LOC107702452,LOC107755535 non-coding downstream 258426 13460145 ~ 13461245 (-)
G88034 nrap,LOC107755535,LOC107702452 non-coding downstream 259806 13458456 ~ 13459865 (-)
G88019 NA non-coding downstream 285546 13433894 ~ 13434125 (-)
G88003 NA non-coding downstream 351351 13365953 ~ 13368320 (-)
G88205 NA non-coding upstream 154204 13993660 ~ 13994186 (-)
G88206 NA non-coding upstream 154916 13994372 ~ 13995952 (-)
G88233 NA non-coding upstream 292463 14131919 ~ 14133138 (-)
G88355 NA non-coding upstream 558904 14398360 ~ 14398928 (-)
G88384 NA non-coding upstream 841461 14680917 ~ 14684300 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107702422,LOC107750316,LOC107566231,LOC106949585,LOC106589326 other downstream 28331 13609420 ~ 13691340 (-)
entpd1 LOC107707825,LOC107755533,LOC107581561,LOC107702455,LOC107684037,LOC107566185 other downstream 179370 13523668 ~ 13540301 (-)
LOC122355808 LOC107684141,LOC107702421,LOC107581556,LOC107684142,LOC107708119,LOC107708127 other downstream 287476 13424308 ~ 13432195 (-)
G87845 LOC107675011 other downstream 966993 12751904 ~ 12752678 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other downstream 1044199 12649383 ~ 12675472 (-)
srsf2a srsf2,LOC107702465,LOC107566380,LOC107684046 other upstream 133426 13972882 ~ 13976511 (-)
G88250 LOC107702476 other upstream 308591 14148047 ~ 14150005 (-)
G88365 NA other upstream 702110 14541566 ~ 14643780 (-)
LOC122355209 NA other upstream 863112 14702568 ~ 14706251 (-)
ndufaf8 NA other upstream 1454377 15293833 ~ 15295240 (-)

Expression



Co-expression Network