msl1b (msl1b,LOC107706890,LOC107552764,LOC107669485,LOC107582751,LOC107666930,LOC107727293)


Basic Information

Item Value
gene id msl1b
gene name msl1b,LOC107706890,LOC107552764,LOC107669485,LOC107582751,LOC107666930,LOC107727293
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11814665 ~ 11820426 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253492.1
CGTATGTTGGGACATTGTGCAGATTCAAGCCTGAAAATGGGGGACAAACAgcaataaaagtaaagtaaacgGCTCATATAAGACGCGTTTCTTCAGATCTTTAGGATTTTACCTTGGGCGAACCAGTTAATATGTCTGCAGACACACCCTGTCTGTATAAGAGCCATGGTTCATGGGGTAGAGGTTTTCCTTCGCAATGAATATGCGACCCGAATGCTTTTCTAAAGTGGGATTGTACTCAAATAACTGTGACTTAAGTCCATCTCAAACAAGACACCCAATTAGTGTCCGAAGGGAGATTGGAAATCCTCCTGGTGACACTCAAGACAGGACCAGACAACATTTGATCTTGGACAAGACTGGGAAAGCCGAGCGGACTTCGCTGCCTTTAAAGCCCGGCAGAGAGTTGGCTGTTGCTTCAGAGGCTGGCTCTGTGGGCACAGAAACACTGTCATCTCAAGCTAAACAAATGGGGGGTGAAGGCACCcctgtaaaaagtaaaactccTCTTGGACAGACCAACACCATTGATAACAAGCCAGAGTTTGTATCCATGAATTCACATAGTAATTCTAGAGACCCTGTAGGTGAGAAAAGCACCAAAGGGTTAGAGACTATGGGGGTTTCTAATGAACACTCGGAGGGCAAAAGGACAAATATGAGGAAGATCACTAGTCATCCTCATGCACAAGCCACTTGCCTTAAACAACTGCTTTTACTTCAGCTGGACTTGATAGagcaacaacagcaacagcTGCAGACAAAAGACAAGGAAATAGATGAACTCAAATCAGACAGAGACACGTTGCTTGCCCGTATTGAGCGCATGGAGCGTCGTTTGCAGTTGTTAAGTAAGGAACCACGTGACAAGAGGCTCTTCCAGCCGCTGGAGAGATGGGTTCCTGACACAGATGACTTTTGGGAATCAGATTTGGGTGACAGCCCACAAACTCAGGCCAAGTCAAGTGGAAAAGTGCAAAAGAGGAAGTTAAATTTGTTAGATACAAAAATGCAGCGGTCGAGAGGGAAGTCATCTAGAATGACCCCTCAAAAACTAGAGACAGAAGGGGCATCTCCGTGTCAGCGTGACCTACGAAACAAGGAGACCCCGGAGAAGACGAATGTTGCGAAATCATCTGGACAGGCAGACCTGCAGCCGGAGGAAGAAGACGGCAGAGAAACTGAAGATCTTCCATACATGACAACAACTGAAATGTACCTATGCTGCTGGCAGCAACCTCCAGCCTCTCCATTACGGGATGAGTCTCCAAAGAAAGAAGAGGATGTTGCAAtCCCATCATGGAGGGAAAACACCATGGAACCCCTTCAGGAGGAGGATGCTGTTGACATCCCAGAAaatcttGATGACAATGTTTTTCTGAAGCGGCATGCAAAGTTAGAACTGGATGAGAAGCGACGAAAAAGATGGGACATTCAAAGAATACGTGAACAGCGTATGCTTCAAAGATTGCAGCAGCGCATGGAGAAGAAAAAGCCGAATGTTCAGGAGAGCGAGCCAGAACTGTCTTCATTTTATCCCGACGTGGACAATGTGGAGGCCATCATGGTAACACCCTTTCTGCCAGTAGTGGCATTTGGTCGGCCTTTGCCCAATTTGCCTCCACAGAACTTTGAGCTGCCCTGGcttgatgaaagaagtagatgTCGCATTGAAAaccaaaagaaacaaactcccCACAGGACCTGTCGGAAATGAGTCACGAACGGGTTCTGGGCAACAGAGGAGCTTTCCTTTATATCCAGTGGCATAGCATGGGGTtaaaggaggcaaagcagggctTGTTCGGTCAGGTGACACAATATTAGTTTAGTGTCTGCCTGCGGTCTGCTCACAACAGAGACTGTTTAGGTGAGAAGAAAATGGCAACATTACAGCTGTTTCCATTGTATTGTGCCCTGATAATAAAGCACCAACTGCCCAGCTAACTGCTATTTTAGTTCCCTCACAATCAGTGTGTGGCCTTGATTTAATCCTTTACTTATAGTCCTGTTCTGTGTCTTTTCACTGAGGCTAAGTGATATTGATTATTGCAGGCTCCACTGCaaatactgttttaatgtgCACTAAACTGTAGTTATGAAGTATTGCTGCACATTTGCATGTAATGCCTCAATATTTGTGTTGAGAATGGCTTTAAagagcttgttttgttttcgcAAATGTAATTGTGCATGAATGTCTCGATGAATCTTACGCCtaaaattgtacatatttttgtaaGCATAGCAGTAGTCAATTAGAAAGGAAAAATATTGTCAGGATTAGAGTAAGGATGTGAAGATGTTTAGATGAATGGCCGATGTAAAAGTCTAAATAAGAATAGTTTGTATGGCTGTACAGGTGTCTCCGAATCTGTTCAGAATCGCATGCAGGTTTAAGGACAATGCCCTTAACGTTATTTTTGGATCAGTTAGTTGgtctgttgatgtttttttttttttgttttttttttgatgtaccTCAACcttcttattaaaaatacagtatattttacacTTCCATTTTCTAAAAACCCTATCCATACCCAGACGTATTGCTTgacattattaatttttcataaattcTGTGCCTCATGGGATTTATTTCAGGgcatttgtgttattttctaAAGATGTTCTTGTTCTAACTCAAAAGTGATAACCTgcttttgtgtgtaaatgtgttgatTTTGTGAGCACCGcacacaagttttttttttgctttagttttttctcCTTGAATGGCTACAACTGGACCTctgtaaatatctttactgaCACTCATTGGCTGTAAATAAGGAAAacattgctgttatttttttatttaatgtcagAAGTGTTGTTTGTTCAGCATAGATATTATATTGATagcattatttacaaaataagattttttgtttttcaaaaaaaaataaaatctcactCTGTGATTTCTTAATTCA

Function

symbol description
msl1b Predicted to enable chromatin binding activity. Predicted to be involved in histone H4-K16 acetylation. Predicted to be part of MSL complex. Orthologous to human MSL1 (MSL complex subunit 1).

NR:

description
PREDICTED: male-specific lethal 1 homolog isoform X1

GO:

id name namespace
GO:0043984 histone H4-K16 acetylation biological_process
GO:0072487 MSL complex cellular_component

KEGG:

id description
K13163 MSL1; male-specific lethal 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253492.1 True 2942 mRNA 0.42 9 11814665 11820426

Neighbor

gene id symbol gene type direction distance location
znf438 znf438,LOC107552762,LOC107706888,LOC107727313,LOC107582754 coding upstream 17050 11753401 ~ 11797615 (+)
arhgap12b arhgap12b,LOC107669490,LOC107552758,LOC107727310 coding upstream 137185 11634881 ~ 11677480 (+)
faap100 LOC107706879,LOC107669495,LOC107552754,LOC107727314,LOC107666926 coding upstream 207303 11602974 ~ 11607362 (+)
chad LOC107552753,LOC107727306,LOC107706882,LOC107698804,LOC107675646,LOC107582760 coding upstream 220123 11586050 ~ 11594542 (+)
armc7 armc7,LOC107706878,LOC107706863 coding upstream 232800 11580576 ~ 11581865 (+)
fbrs LOC107552766,LOC107706892,LOC107666918 coding downstream 3413 11823839 ~ 11835131 (+)
LOC122355327 LOC107669484,LOC107666914,LOC107727294,LOC107552729,LOC107706895 coding downstream 14847 11835273 ~ 11861572 (+)
ttll6 ttll6,LOC107582749,LOC107666932,LOC107727303,LOC107669465,LOC107706894,LOC107552736 coding downstream 43196 11863622 ~ 11871774 (+)
hoxb8b hoxb8b,LOC107669483,LOC107706868,LOC107552737,LOC107727302,LOC107666913 coding downstream 53223 11873649 ~ 11875679 (+)
hoxb1b hoxb1b,LOC107669476,LOC107552742,LOC107706871 coding downstream 59014 11879440 ~ 11897570 (+)
G87343 NA non-coding upstream 11038 11803287 ~ 11803627 (+)
G87341 NA non-coding upstream 14038 11800356 ~ 11800627 (+)
G87331 NA non-coding upstream 70260 11741981 ~ 11744405 (+)
G87282 LOC107552728,LOC107706876,LOC107700134,LOC107698791,LOC107582764,LOC107727319 non-coding upstream 273561 11473846 ~ 11541104 (+)
G87272 NA non-coding upstream 298669 11438405 ~ 11515996 (+)
G87337 chmp2a,LOC106589279 non-coding downstream 1637 11822063 ~ 11823322 (+)
G87617 NA non-coding downstream 176864 11997290 ~ 11997512 (+)
G87621 NA non-coding downstream 246977 12067403 ~ 12067629 (+)
G87644 NA non-coding downstream 328997 12149423 ~ 12149637 (+)
LOC122355133 NA non-coding downstream 330726 12151152 ~ 12156922 (+)
G87315 zeb1b,LOC107666916,LOC107706887,LOC107727309,LOC107582755,LOC107552760,LOC107669492 other upstream 113010 11694844 ~ 11701655 (+)
svila LOC107686370,LOC107657481,LOC107584371,LOC107749370,LOC107549408 other upstream 1232120 10523143 ~ 10582545 (+)
LOC122355633 rhoq other upstream 1314967 10497425 ~ 10499698 (+)
LOC122355192 opn4b,LOC107552747,LOC107739286,LOC107568552,LOC107582762,LOC107700131 other upstream 1318388 10481492 ~ 10496277 (+)
LOC122355255 NA other upstream 1915664 9883033 ~ 9899001 (+)
hoxb6b hoxb6b,LOC107669478,LOC107706870,LOC107582852,LOC107552740,LOC107666911,LOC107727299 other downstream 61725 11882151 ~ 11884097 (+)
nbr1a nbr1,LOC107669491,LOC107706899,LOC107582742,LOC107727312,LOC107666919 other downstream 116415 11936841 ~ 11945635 (+)
G87817 NA other downstream 912338 12732764 ~ 12737649 (+)
gall si:rp71-1c10.8,LOC107677873,LOC107743798,LOC107675007,LOC107566084,LOC107754084,LOC107563807 other downstream 939948 12760374 ~ 12762731 (+)
G88016 NA other downstream 1621517 13441943 ~ 13444915 (+)

Expression


Co-expression Network